Wall clock time and date at job start Tue Mar 31 2020 16:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 109.47013 * 2 1 4 4 C 1.46761 * 124.34781 * 90.00738 * 3 2 1 5 5 C 1.54479 * 105.47325 * 197.01466 * 4 3 2 6 6 H 1.09003 * 110.96831 * 92.70310 * 5 4 3 7 7 C 1.50694 * 110.96848 * 216.45930 * 5 4 3 8 8 O 1.21290 * 120.00351 * 15.34207 * 7 5 4 9 9 N 1.34781 * 120.00284 * 195.33493 * 7 5 4 10 10 C 1.46500 * 119.99432 * 5.68966 * 9 7 5 11 11 C 1.50706 * 109.47057 * 93.90993 * 10 9 7 12 12 H 1.07996 * 119.99913 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99980 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99841 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00094 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47317 * 59.99815 * 15 13 11 17 17 H 1.48494 * 109.47188 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46896 * 299.99993 * 15 13 11 19 19 C 1.39916 * 120.00394 * 185.69153 * 9 7 5 20 20 C 1.38873 * 120.07043 * 6.53573 * 19 9 7 21 21 C 1.38114 * 119.92823 * 179.76639 * 20 19 9 22 22 C 1.38284 * 120.07140 * 0.48921 * 21 20 19 23 23 C 1.50699 * 119.92819 * 179.74248 * 22 21 20 24 24 C 1.38279 * 120.14108 * 359.77006 * 22 21 20 25 25 C 1.38117 * 120.07075 * 359.97438 * 24 22 21 26 26 C 1.54626 * 101.76396 * 334.58414 * 5 4 3 27 27 C 1.34414 * 124.35264 * 269.70102 * 3 2 1 28 28 O 1.21291 * 124.94130 * 359.57551 * 27 3 2 29 29 H 1.09000 * 109.47928 * 59.99443 * 1 2 3 30 30 H 1.09007 * 109.46968 * 299.99505 * 1 2 3 31 31 H 1.08997 * 109.47247 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47783 * 120.00460 * 2 1 3 33 33 H 1.09007 * 109.46968 * 240.00494 * 2 1 3 34 34 H 1.09006 * 110.24208 * 316.01846 * 4 3 2 35 35 H 1.09001 * 110.24898 * 78.00744 * 4 3 2 36 36 H 1.08998 * 109.47063 * 213.90791 * 10 9 7 37 37 H 1.08998 * 109.47363 * 333.90891 * 10 9 7 38 38 H 0.97005 * 119.99951 * 180.02562 * 14 13 11 39 39 H 1.07997 * 120.03709 * 359.97438 * 20 19 9 40 40 H 1.07998 * 119.96501 * 180.21303 * 21 20 19 41 41 H 1.09002 * 109.47352 * 270.01791 * 23 22 21 42 42 H 1.08998 * 109.47528 * 30.02718 * 23 22 21 43 43 H 1.09007 * 109.46685 * 150.02519 * 23 22 21 44 44 H 1.07994 * 119.96682 * 179.97438 * 24 22 21 45 45 H 1.07995 * 120.03864 * 179.97438 * 25 24 22 46 46 H 1.08996 * 110.48455 * 143.47669 * 26 5 4 47 47 H 1.09008 * 110.48305 * 265.98505 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2944 2.1619 1.2117 5 6 2.3529 3.6346 0.7488 6 1 1.3781 4.1127 0.8450 7 6 3.4036 4.3986 1.5125 8 8 4.2451 3.8009 2.1495 9 7 3.4085 5.7461 1.4875 10 6 2.3223 6.4703 0.8227 11 6 1.2640 6.8279 1.8343 12 1 1.3883 6.5445 2.8690 13 6 0.1375 7.5178 1.4390 14 7 -0.0131 7.8641 0.1793 15 14 -1.1739 7.9617 2.6930 16 1 -0.5791 8.8205 3.7484 17 1 -2.2749 8.6955 2.0191 18 1 -1.7104 6.7212 3.3083 19 6 4.4508 6.4534 2.0965 20 6 5.5481 5.7728 2.6076 21 6 6.5776 6.4743 3.2039 22 6 6.5119 7.8521 3.3013 23 6 7.6344 8.6138 3.9577 24 6 5.4182 8.5324 2.7981 25 6 4.3878 7.8372 2.1960 26 6 2.7503 3.4822 -0.7378 27 6 2.2765 2.0945 -1.1097 28 8 2.1461 1.6857 -2.2442 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 0.8898 33 1 1.8933 -0.5138 -0.8901 34 1 1.4933 2.0264 1.9384 35 1 3.2501 1.8637 1.6429 36 1 2.7157 7.3809 0.3711 37 1 1.8860 5.8397 0.0480 38 1 -0.8054 8.3498 -0.0988 39 1 5.5979 4.6963 2.5359 40 1 7.4328 5.9458 3.5985 41 1 7.4328 8.7105 5.0245 42 1 8.5718 8.0769 3.8121 43 1 7.7105 9.6053 3.5111 44 1 5.3697 9.6084 2.8761 45 1 3.5337 8.3690 1.8036 46 1 2.2489 4.2352 -1.3457 47 1 3.8315 3.5579 -0.8533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171028544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:50 Heat of formation + Delta-G solvation = -34.860334 kcal Electronic energy + Delta-G solvation = -28791.876663 eV Core-core repulsion = 24939.793234 eV Total energy + Delta-G solvation = -3852.083429 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.91700 -39.77615 -38.11080 -36.19747 -35.53928 -33.91207 -32.89145 -31.46039 -30.39650 -29.64558 -27.69990 -27.59115 -26.15929 -23.90178 -23.46542 -22.63808 -21.88959 -20.73368 -19.32905 -18.90540 -17.31242 -16.92803 -16.67837 -16.43775 -15.81417 -15.33336 -14.87935 -14.68394 -14.53385 -14.12691 -13.98468 -13.81274 -13.58441 -13.45783 -13.20769 -13.14775 -12.97981 -12.77473 -12.49460 -12.29237 -11.98343 -11.93003 -11.87022 -11.58651 -11.43724 -11.34116 -11.15487 -11.08838 -11.00026 -10.76818 -10.58707 -10.33193 -10.14477 -9.74290 -9.18474 -8.90909 -8.70860 -8.62438 -8.38483 -7.19032 -6.33822 -4.43579 1.74399 1.96600 2.68342 2.91930 3.07375 3.15905 3.21965 3.24705 3.48674 4.19871 4.37208 4.38892 4.59897 4.86535 4.96352 4.99934 5.10089 5.13980 5.27182 5.28211 5.30822 5.41294 5.54552 5.55848 5.63403 5.64885 5.74932 5.78263 5.79482 5.93057 5.93972 6.05387 6.10090 6.12166 6.20452 6.25424 6.49720 6.58497 6.69751 6.85040 6.91898 6.98727 7.11821 7.15299 7.23646 7.58344 7.72605 7.80714 7.99323 8.26036 8.50953 8.67280 9.25302 10.72181 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008665 B = 0.004638 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.545854 B = 6035.169090 C = 8377.568833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.123 3.877 3 N -0.619 5.619 4 C 0.116 3.884 5 C -0.121 4.121 6 H 0.133 0.867 7 C 0.531 3.469 8 O -0.540 6.540 9 N -0.528 5.528 10 C 0.226 3.774 11 C -0.545 4.545 12 H 0.063 0.937 13 C 0.070 3.930 14 N -0.886 5.886 15 Si 0.898 3.102 16 H -0.274 1.274 17 H -0.285 1.285 18 H -0.275 1.275 19 C 0.164 3.836 20 C -0.171 4.171 21 C -0.108 4.108 22 C -0.129 4.129 23 C -0.105 4.105 24 C -0.104 4.104 25 C -0.136 4.136 26 C -0.140 4.140 27 C 0.525 3.475 28 O -0.536 6.536 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.046 0.954 37 H 0.050 0.950 38 H 0.269 0.731 39 H 0.173 0.827 40 H 0.114 0.886 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.059 0.941 44 H 0.117 0.883 45 H 0.140 0.860 46 H 0.115 0.885 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.441 -6.843 3.169 9.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.001 3.999 3 N -0.353 5.353 4 C -0.007 4.007 5 C -0.142 4.142 6 H 0.150 0.850 7 C 0.321 3.679 8 O -0.421 6.421 9 N -0.246 5.246 10 C 0.107 3.893 11 C -0.583 4.583 12 H 0.082 0.918 13 C -0.134 4.134 14 N -0.524 5.524 15 Si 0.725 3.275 16 H -0.199 1.199 17 H -0.210 1.210 18 H -0.200 1.200 19 C 0.068 3.932 20 C -0.190 4.190 21 C -0.127 4.127 22 C -0.130 4.130 23 C -0.161 4.161 24 C -0.123 4.123 25 C -0.156 4.156 26 C -0.180 4.180 27 C 0.313 3.687 28 O -0.413 6.413 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.110 0.890 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.189 0.811 40 H 0.132 0.868 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.135 0.865 45 H 0.158 0.842 46 H 0.134 0.866 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.554 -7.377 2.705 10.232 hybrid contribution -1.064 0.621 0.753 1.443 sum 5.490 -6.756 3.457 9.367 Atomic orbital electron populations 1.22171 0.95762 1.02119 1.02839 1.21310 0.94394 0.81191 1.02972 1.48336 1.65713 1.13878 1.07383 1.22039 1.03110 0.88659 0.86906 1.22221 1.01725 0.95586 0.94673 0.84959 1.20084 0.84974 0.82134 0.80725 1.90324 1.39178 1.69022 1.43543 1.45943 1.22607 1.05448 1.50644 1.19779 0.83110 0.93091 0.93335 1.21327 1.03674 1.38065 0.95261 0.91848 1.24906 0.98022 0.95030 0.95461 1.69898 1.28861 1.38312 1.15285 0.86539 0.80829 0.78892 0.81220 1.19933 1.21013 1.20007 1.18009 0.88056 0.91463 0.95667 1.22480 0.92629 1.03775 1.00146 1.20870 0.98522 0.93165 1.00134 1.19790 0.96865 0.94135 1.02211 1.20669 0.96185 0.99401 0.99884 1.20751 0.93476 0.99172 0.98920 1.21133 1.00043 0.92655 1.01813 1.22291 1.04002 0.96317 0.95438 1.20784 0.76084 0.87529 0.84292 1.90700 1.53936 1.75558 1.21107 0.92109 0.92181 0.91599 0.90361 0.90128 0.89916 0.89025 0.93595 0.93184 0.92143 0.81073 0.86809 0.92020 0.92271 0.92184 0.86502 0.84191 0.86630 0.87750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 10.24 37.15 0.38 -1.38 16 2 C 0.12 1.35 6.66 -4.04 -0.03 1.33 16 3 N -0.62 -8.43 2.93 -172.41 -0.51 -8.93 16 4 C 0.12 1.55 6.81 -3.12 -0.02 1.53 16 5 C -0.12 -1.89 2.48 -90.14 -0.22 -2.11 16 6 H 0.13 2.24 7.02 -51.93 -0.36 1.88 16 7 C 0.53 9.64 6.76 -10.99 -0.07 9.56 16 8 O -0.54 -10.16 12.02 5.55 0.07 -10.09 16 9 N -0.53 -10.44 2.68 -114.74 -0.31 -10.74 16 10 C 0.23 4.88 4.21 -5.19 -0.02 4.86 16 11 C -0.55 -13.10 8.94 -34.44 -0.31 -13.41 16 12 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 13 C 0.07 1.73 5.46 -17.82 -0.10 1.64 16 14 N -0.89 -22.88 13.29 55.43 0.74 -22.14 16 15 Si 0.90 19.61 29.54 -169.99 -5.02 14.59 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 18 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 19 C 0.16 3.20 6.48 -83.70 -0.54 2.66 16 20 C -0.17 -3.12 8.99 -39.39 -0.35 -3.47 16 21 C -0.11 -1.73 9.69 -39.61 -0.38 -2.11 16 22 C -0.13 -1.96 5.88 -104.59 -0.62 -2.58 16 23 C -0.10 -1.20 10.01 36.00 0.36 -0.84 16 24 C -0.10 -1.71 9.69 -39.61 -0.38 -2.09 16 25 C -0.14 -2.58 9.07 -39.39 -0.36 -2.94 16 26 C -0.14 -2.12 6.08 -26.74 -0.16 -2.28 16 27 C 0.53 8.44 8.02 -10.86 -0.09 8.36 16 28 O -0.54 -10.22 17.59 5.55 0.10 -10.13 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.62 8.14 -51.92 -0.42 0.19 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.92 7.92 -51.92 -0.41 0.51 16 34 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.09 1.25 6.85 -51.93 -0.36 0.90 16 36 H 0.05 1.06 6.75 -51.93 -0.35 0.71 16 37 H 0.05 1.07 5.39 -51.93 -0.28 0.79 16 38 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 39 H 0.17 3.22 4.67 -55.46 -0.26 2.96 16 40 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 43 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 44 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 45 H 0.14 2.84 6.18 -52.49 -0.32 2.52 16 46 H 0.12 1.77 7.52 -51.93 -0.39 1.38 16 47 H 0.10 1.52 7.89 -51.92 -0.41 1.11 16 LS Contribution 382.27 15.07 5.76 5.76 Total: -1.00 -28.25 382.27 -9.00 -37.26 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -6.91 Total: 7.72 kcal Atomic # 6 Polarization: -0.37 SS G_CDS: -2.92 Total: -3.29 kcal Atomic # 7 Polarization: -41.74 SS G_CDS: -0.08 Total: -41.82 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: 0.16 Total: -20.22 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.02 Total: 14.59 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.25 -9.00 -37.26 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171028544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.395 kcal (2) G-P(sol) polarization free energy of solvation -28.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds