Wall clock time and date at job start Tue Mar 31 2020 16:25:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46505 * 109.47013 * 2 1 4 4 C 1.46761 * 124.34781 * 90.00738 * 3 2 1 5 5 C 1.54479 * 105.47325 * 197.01466 * 4 3 2 6 6 H 1.09003 * 110.96831 * 92.70310 * 5 4 3 7 7 C 1.50694 * 110.96848 * 216.45930 * 5 4 3 8 8 O 1.21290 * 120.00351 * 15.34207 * 7 5 4 9 9 N 1.34781 * 120.00284 * 195.33493 * 7 5 4 10 10 C 1.46500 * 119.99432 * 5.68966 * 9 7 5 11 11 C 1.50706 * 109.47057 * 93.90993 * 10 9 7 12 12 H 1.07996 * 119.99913 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99980 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99841 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00094 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47317 * 59.99815 * 15 13 11 17 17 H 1.48494 * 109.47188 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.46896 * 299.99993 * 15 13 11 19 19 C 1.39916 * 120.00394 * 185.69153 * 9 7 5 20 20 C 1.38873 * 120.07043 * 6.53573 * 19 9 7 21 21 C 1.38114 * 119.92823 * 179.76639 * 20 19 9 22 22 C 1.38284 * 120.07140 * 0.48921 * 21 20 19 23 23 C 1.50699 * 119.92819 * 179.74248 * 22 21 20 24 24 C 1.38279 * 120.14108 * 359.77006 * 22 21 20 25 25 C 1.38117 * 120.07075 * 359.97438 * 24 22 21 26 26 C 1.54626 * 101.76396 * 334.58414 * 5 4 3 27 27 C 1.34414 * 124.35264 * 269.70102 * 3 2 1 28 28 O 1.21291 * 124.94130 * 359.57551 * 27 3 2 29 29 H 1.09000 * 109.47928 * 59.99443 * 1 2 3 30 30 H 1.09007 * 109.46968 * 299.99505 * 1 2 3 31 31 H 1.08997 * 109.47247 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47783 * 120.00460 * 2 1 3 33 33 H 1.09007 * 109.46968 * 240.00494 * 2 1 3 34 34 H 1.09006 * 110.24208 * 316.01846 * 4 3 2 35 35 H 1.09001 * 110.24898 * 78.00744 * 4 3 2 36 36 H 1.08998 * 109.47063 * 213.90791 * 10 9 7 37 37 H 1.08998 * 109.47363 * 333.90891 * 10 9 7 38 38 H 0.97005 * 119.99951 * 180.02562 * 14 13 11 39 39 H 1.07997 * 120.03709 * 359.97438 * 20 19 9 40 40 H 1.07998 * 119.96501 * 180.21303 * 21 20 19 41 41 H 1.09002 * 109.47352 * 270.01791 * 23 22 21 42 42 H 1.08998 * 109.47528 * 30.02718 * 23 22 21 43 43 H 1.09007 * 109.46685 * 150.02519 * 23 22 21 44 44 H 1.07994 * 119.96682 * 179.97438 * 24 22 21 45 45 H 1.07995 * 120.03864 * 179.97438 * 25 24 22 46 46 H 1.08996 * 110.48455 * 143.47669 * 26 5 4 47 47 H 1.09008 * 110.48305 * 265.98505 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2944 2.1619 1.2117 5 6 2.3529 3.6346 0.7488 6 1 1.3781 4.1127 0.8450 7 6 3.4036 4.3986 1.5125 8 8 4.2451 3.8009 2.1495 9 7 3.4085 5.7461 1.4875 10 6 2.3223 6.4703 0.8227 11 6 1.2640 6.8279 1.8343 12 1 1.3883 6.5445 2.8690 13 6 0.1375 7.5178 1.4390 14 7 -0.0131 7.8641 0.1793 15 14 -1.1739 7.9617 2.6930 16 1 -0.5791 8.8205 3.7484 17 1 -2.2749 8.6955 2.0191 18 1 -1.7104 6.7212 3.3083 19 6 4.4508 6.4534 2.0965 20 6 5.5481 5.7728 2.6076 21 6 6.5776 6.4743 3.2039 22 6 6.5119 7.8521 3.3013 23 6 7.6344 8.6138 3.9577 24 6 5.4182 8.5324 2.7981 25 6 4.3878 7.8372 2.1960 26 6 2.7503 3.4822 -0.7378 27 6 2.2765 2.0945 -1.1097 28 8 2.1461 1.6857 -2.2442 29 1 -0.3635 0.5139 -0.8899 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 0.8898 33 1 1.8933 -0.5138 -0.8901 34 1 1.4933 2.0264 1.9384 35 1 3.2501 1.8637 1.6429 36 1 2.7157 7.3809 0.3711 37 1 1.8860 5.8397 0.0480 38 1 -0.8054 8.3498 -0.0988 39 1 5.5979 4.6963 2.5359 40 1 7.4328 5.9458 3.5985 41 1 7.4328 8.7105 5.0245 42 1 8.5718 8.0769 3.8121 43 1 7.7105 9.6053 3.5111 44 1 5.3697 9.6084 2.8761 45 1 3.5337 8.3690 1.8036 46 1 2.2489 4.2352 -1.3457 47 1 3.8315 3.5579 -0.8533 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171028544.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:50 Heat of formation + Delta-G solvation = -48.437486 kcal Electronic energy + Delta-G solvation = -28792.465413 eV Core-core repulsion = 24939.793234 eV Total energy + Delta-G solvation = -3852.672179 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.27770 -41.10126 -39.45459 -37.49538 -37.07778 -35.02354 -34.68887 -32.72546 -31.75540 -30.72133 -29.40945 -28.85545 -27.36409 -25.37818 -24.80689 -23.79610 -23.29891 -22.04764 -20.52503 -20.31287 -18.76854 -18.64532 -18.02164 -17.86274 -17.10657 -16.56783 -16.49324 -16.11021 -16.01270 -15.37730 -15.26381 -14.94572 -14.75046 -14.70659 -14.52279 -14.40013 -14.24827 -14.11627 -14.02721 -13.46191 -13.26738 -13.20913 -12.94927 -12.87707 -12.85592 -12.63726 -12.59356 -12.52687 -12.23039 -12.17357 -11.99946 -11.91791 -11.78439 -11.05688 -10.75484 -10.64867 -10.28262 -9.78885 -9.74430 -8.65206 -8.22265 -6.39861 0.38608 0.60167 1.39021 1.40989 1.42708 1.48901 1.57139 1.86764 2.08538 2.38692 3.01205 3.06576 3.10124 3.36173 3.52271 3.79824 4.02222 4.11318 4.14604 4.16662 4.23687 4.33303 4.45450 4.49315 4.50831 4.53574 4.58463 4.66212 4.68079 4.81460 4.90630 4.92632 4.93467 4.96900 4.99338 5.13193 5.21685 5.27544 5.29279 5.48921 5.53883 5.58690 5.64695 5.77562 5.85421 5.94404 5.96602 6.32546 6.43321 6.71955 7.01637 7.07581 7.32106 8.80203 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.008665 B = 0.004638 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.545854 B = 6035.169090 C = 8377.568833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.116 3.884 3 N -0.611 5.611 4 C 0.124 3.876 5 C -0.115 4.115 6 H 0.118 0.882 7 C 0.530 3.470 8 O -0.545 6.545 9 N -0.535 5.535 10 C 0.242 3.758 11 C -0.545 4.545 12 H 0.051 0.949 13 C 0.030 3.970 14 N -0.914 5.914 15 Si 0.951 3.049 16 H -0.275 1.275 17 H -0.282 1.282 18 H -0.269 1.269 19 C 0.134 3.866 20 C -0.182 4.182 21 C -0.107 4.107 22 C -0.122 4.122 23 C -0.102 4.102 24 C -0.107 4.107 25 C -0.156 4.156 26 C -0.135 4.135 27 C 0.522 3.478 28 O -0.571 6.571 29 H 0.035 0.965 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.026 0.974 37 H 0.050 0.950 38 H 0.269 0.731 39 H 0.166 0.834 40 H 0.143 0.857 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.139 0.861 45 H 0.116 0.884 46 H 0.108 0.892 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.496 -7.388 5.198 11.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.005 4.005 3 N -0.344 5.344 4 C 0.002 3.998 5 C -0.137 4.137 6 H 0.136 0.864 7 C 0.320 3.680 8 O -0.427 6.427 9 N -0.254 5.254 10 C 0.123 3.877 11 C -0.583 4.583 12 H 0.070 0.930 13 C -0.171 4.171 14 N -0.552 5.552 15 Si 0.776 3.224 16 H -0.200 1.200 17 H -0.207 1.207 18 H -0.194 1.194 19 C 0.039 3.961 20 C -0.201 4.201 21 C -0.125 4.125 22 C -0.123 4.123 23 C -0.159 4.159 24 C -0.125 4.125 25 C -0.177 4.177 26 C -0.176 4.176 27 C 0.310 3.690 28 O -0.451 6.451 29 H 0.054 0.946 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.128 0.872 33 H 0.094 0.906 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.044 0.956 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.183 0.817 40 H 0.161 0.839 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.157 0.843 45 H 0.134 0.866 46 H 0.127 0.873 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 7.620 -7.942 4.775 11.997 hybrid contribution -1.281 0.813 0.184 1.528 sum 6.339 -7.129 4.959 10.751 Atomic orbital electron populations 1.22134 0.95108 1.03465 1.01672 1.21604 0.94910 0.79649 1.04298 1.48448 1.64537 1.14783 1.06593 1.22041 1.04135 0.86763 0.86911 1.22123 1.00066 0.96794 0.94718 0.86350 1.20393 0.85291 0.81658 0.80636 1.90314 1.39570 1.68901 1.43878 1.45879 1.22437 1.06009 1.51053 1.19392 0.83102 0.92425 0.92817 1.21443 1.04237 1.37665 0.94998 0.93049 1.25529 0.99718 0.95047 0.96813 1.69983 1.29436 1.39185 1.16640 0.85706 0.78722 0.78689 0.79235 1.20013 1.20720 1.19403 1.18287 0.88755 0.91934 0.97100 1.22505 0.93043 1.03648 1.00929 1.21236 0.98530 0.93766 0.99011 1.20237 0.97213 0.94166 1.00678 1.20740 0.95192 0.99721 1.00246 1.21054 0.93065 1.00339 0.98073 1.21083 1.00530 0.92683 1.03396 1.22226 1.04245 0.96080 0.95002 1.20833 0.75991 0.87853 0.84340 1.90676 1.55752 1.76239 1.22463 0.94589 0.91931 0.89053 0.87236 0.90586 0.87843 0.88624 0.95606 0.93264 0.92143 0.81714 0.83882 0.90696 0.90497 0.90861 0.84350 0.86609 0.87343 0.87224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 10.24 71.98 0.74 -2.42 16 2 C 0.12 2.34 6.66 86.38 0.57 2.91 16 3 N -0.61 -16.05 2.93 -817.98 -2.40 -18.45 16 4 C 0.12 3.18 6.81 86.83 0.59 3.77 16 5 C -0.12 -3.65 2.48 -10.49 -0.03 -3.68 16 6 H 0.12 4.11 7.02 -2.39 -0.02 4.10 16 7 C 0.53 19.49 6.76 87.65 0.59 20.08 16 8 O -0.55 -20.44 12.02 -3.06 -0.04 -20.48 16 9 N -0.54 -21.86 2.68 -635.30 -1.71 -23.56 16 10 C 0.24 10.97 4.21 85.64 0.36 11.33 16 11 C -0.55 -26.95 8.94 25.60 0.23 -26.72 16 12 H 0.05 2.63 7.81 -2.91 -0.02 2.60 16 13 C 0.03 1.53 5.46 84.65 0.46 1.99 16 14 N -0.91 -48.23 13.29 21.45 0.28 -47.94 16 15 Si 0.95 40.37 29.54 68.60 2.03 42.40 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 17 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 18 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 19 C 0.13 5.37 6.48 38.16 0.25 5.62 16 20 C -0.18 -6.57 8.99 22.39 0.20 -6.36 16 21 C -0.11 -3.19 9.69 22.25 0.22 -2.97 16 22 C -0.12 -3.41 5.88 -19.84 -0.12 -3.53 16 23 C -0.10 -1.96 10.01 71.24 0.71 -1.24 16 24 C -0.11 -3.39 9.69 22.25 0.22 -3.17 16 25 C -0.16 -6.08 9.07 22.39 0.20 -5.88 16 26 C -0.14 -4.20 6.08 30.59 0.19 -4.02 16 27 C 0.52 16.92 8.02 87.90 0.71 17.62 16 28 O -0.57 -22.23 17.59 -3.06 -0.05 -22.29 16 29 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.06 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.26 16 32 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.64 7.92 -2.38 -0.02 1.62 16 34 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16 35 H 0.10 2.45 6.85 -2.39 -0.02 2.43 16 36 H 0.03 1.27 6.75 -2.39 -0.02 1.25 16 37 H 0.05 2.22 5.39 -2.39 -0.01 2.21 16 38 H 0.27 13.62 8.31 -92.70 -0.77 12.84 16 39 H 0.17 6.16 4.67 -49.90 -0.23 5.92 16 40 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 41 H 0.07 1.29 8.14 -2.39 -0.02 1.28 16 42 H 0.08 1.23 8.08 -2.39 -0.02 1.21 16 43 H 0.07 1.24 8.08 -2.38 -0.02 1.22 16 44 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 45 H 0.12 4.99 6.18 -2.91 -0.02 4.97 16 46 H 0.11 3.51 7.52 -2.39 -0.02 3.49 16 47 H 0.11 3.27 7.89 -2.38 -0.02 3.25 16 Total: -1.00 -61.92 382.27 4.96 -56.95 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.76 Total: 30.04 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 6.09 Total: 3.33 kcal Atomic # 7 Polarization: -86.14 SS G_CDS: -3.82 Total: -89.96 kcal Atomic # 8 Polarization: -42.67 SS G_CDS: -0.09 Total: -42.76 kcal Atomic # 14 Polarization: 40.37 SS G_CDS: 2.03 Total: 42.40 kcal Total: -61.92 4.96 -56.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171028544.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.516 kcal (2) G-P(sol) polarization free energy of solvation -61.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds