Wall clock time and date at job start Tue Mar 31 2020 15:50:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47093 * 2 1 4 4 C 1.50704 * 109.46955 * 239.99984 * 2 1 3 5 5 H 1.07991 * 119.99936 * 275.00546 * 4 2 1 6 6 C 1.37876 * 119.99897 * 95.00261 * 4 2 1 7 7 N 1.31507 * 120.00299 * 184.91786 * 6 4 2 8 8 Si 1.86803 * 120.00049 * 4.91757 * 6 4 2 9 9 H 1.48498 * 109.47359 * 84.82936 * 8 6 4 10 10 H 1.48501 * 109.47135 * 204.83523 * 8 6 4 11 11 H 1.48503 * 109.47019 * 324.83209 * 8 6 4 12 12 N 1.46499 * 109.47229 * 120.00435 * 2 1 3 13 13 C 1.34776 * 119.99722 * 275.00033 * 12 2 1 14 14 O 1.21281 * 120.00134 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99849 * 179.97438 * 13 12 2 16 16 H 1.08996 * 109.60236 * 299.67295 * 15 13 12 17 17 C 1.53346 * 109.60334 * 59.99902 * 15 13 12 18 18 C 1.53072 * 108.42461 * 187.28938 * 17 15 13 19 19 C 1.50187 * 109.88963 * 311.09599 * 18 17 15 20 20 O 1.21278 * 118.24281 * 197.58259 * 19 18 17 21 21 N 1.33353 * 123.50744 * 17.86249 * 19 18 17 22 22 C 1.46494 * 117.94783 * 177.47189 * 21 19 18 23 23 C 1.45775 * 124.09147 * 357.20782 * 21 19 18 24 24 H 1.09002 * 109.51004 * 259.17236 * 23 21 19 25 25 C 1.50694 * 109.15723 * 139.75455 * 23 21 19 26 26 C 1.38235 * 120.00448 * 318.85919 * 25 23 21 27 27 C 1.38231 * 120.00175 * 179.80996 * 26 25 23 28 28 C 1.38233 * 120.00222 * 0.41831 * 27 26 25 29 29 C 1.38242 * 119.99727 * 359.81466 * 28 27 26 30 30 C 1.38226 * 119.99760 * 359.97438 * 29 28 27 31 31 H 1.09004 * 109.46578 * 295.03507 * 1 2 3 32 32 H 1.08997 * 109.47317 * 55.03422 * 1 2 3 33 33 H 1.08997 * 109.47777 * 175.03663 * 1 2 3 34 34 H 0.96999 * 120.00233 * 180.02562 * 7 6 4 35 35 H 0.97002 * 120.00449 * 94.99251 * 12 2 1 36 36 H 1.08991 * 109.67613 * 67.55227 * 17 15 13 37 37 H 1.08992 * 109.70281 * 307.03316 * 17 15 13 38 38 H 1.09001 * 109.40042 * 190.97130 * 18 17 15 39 39 H 1.09000 * 109.40632 * 71.21962 * 18 17 15 40 40 H 1.09006 * 109.47226 * 0.02562 * 22 21 19 41 41 H 1.09005 * 109.47334 * 119.99817 * 22 21 19 42 42 H 1.08991 * 109.47657 * 240.00519 * 22 21 19 43 43 H 1.08000 * 119.99677 * 359.97438 * 26 25 23 44 44 H 1.08007 * 120.00018 * 180.20978 * 27 26 25 45 45 H 1.08000 * 120.00391 * 179.79040 * 28 27 26 46 46 H 1.07998 * 119.99645 * 179.97438 * 29 28 27 47 47 H 1.08006 * 119.99687 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7854 -1.2291 6 6 2.3603 0.0121 -2.3581 7 7 2.7059 -0.6131 -3.4622 8 14 2.3137 1.8791 -2.3174 9 1 3.5992 2.3948 -1.7821 10 1 2.1058 2.3991 -3.6927 11 1 1.1988 2.3275 -1.4449 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8591 1.1585 2.4115 15 6 2.6489 -0.7290 3.5876 16 1 1.9743 -1.5477 3.8378 17 6 4.0546 -1.2826 3.3248 18 6 4.4635 -2.1506 4.5174 19 6 4.2102 -1.4100 5.7992 20 8 4.7629 -1.7995 6.8060 21 7 3.4059 -0.3502 5.8904 22 6 3.2025 0.2454 7.2133 23 6 2.7210 0.2559 4.7553 24 1 3.2595 1.1496 4.4401 25 6 1.3241 0.6412 5.1689 26 6 0.5802 -0.2082 5.9665 27 6 -0.6997 0.1470 6.3491 28 6 -1.2392 1.3477 5.9269 29 6 -0.4971 2.1950 5.1253 30 6 0.7844 1.8417 4.7464 31 1 -0.3632 0.4349 0.9312 32 1 -0.3634 0.5889 -0.8421 33 1 -0.3634 -1.0237 -0.0889 34 1 2.9369 -0.1047 -4.2554 35 1 2.2490 -1.6319 1.1526 36 1 4.7586 -0.4581 3.2125 37 1 4.0481 -1.8858 2.4171 38 1 5.5237 -2.3926 4.4425 39 1 3.8816 -3.0723 4.5109 40 1 3.7783 -0.3095 7.9541 41 1 3.5340 1.2837 7.1992 42 1 2.1442 0.2054 7.4710 43 1 1.0001 -1.1482 6.2929 44 1 -1.2796 -0.5151 6.9751 45 1 -2.2404 1.6237 6.2230 46 1 -0.9187 3.1328 4.7952 47 1 1.3640 2.5034 4.1197 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171801974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:30 Heat of formation + Delta-G solvation = -45.408153 kcal Electronic energy + Delta-G solvation = -29506.508986 eV Core-core repulsion = 25653.968169 eV Total energy + Delta-G solvation = -3852.540817 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25365 -39.25208 -38.81960 -36.39133 -34.95213 -34.37016 -32.39565 -31.74970 -30.86237 -30.11768 -28.67088 -27.21502 -25.38674 -24.75512 -23.14846 -22.61522 -21.43400 -20.96163 -19.67259 -18.70344 -17.72796 -17.26061 -16.69734 -16.49409 -15.89006 -15.47013 -15.43463 -15.16664 -14.71211 -14.41140 -14.23839 -14.07779 -13.60611 -13.30000 -13.27566 -13.15613 -13.09890 -12.58245 -12.47193 -12.43183 -12.25098 -11.95888 -11.95134 -11.64427 -11.52730 -11.19478 -11.10657 -10.99107 -10.91178 -10.86094 -10.63412 -9.93992 -9.77370 -9.27558 -9.24452 -8.98012 -8.79269 -8.76278 -8.62299 -8.17067 -6.29284 -4.33419 1.28325 1.46331 2.51772 2.83284 3.10803 3.21499 3.29264 3.35141 3.74963 3.84113 4.26497 4.36495 4.47864 4.56746 4.69817 4.85318 4.90463 5.01262 5.10271 5.11202 5.16844 5.25388 5.36349 5.41215 5.45394 5.48130 5.60592 5.63693 5.67956 5.76761 5.80025 5.96505 5.99323 6.10530 6.20630 6.27748 6.44596 6.46739 6.56683 6.62410 6.68426 6.86744 7.01435 7.12418 7.30104 7.31078 7.48160 8.02326 8.05157 8.48098 8.70661 8.86018 9.32448 10.82396 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.004244 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.226848 B = 6595.320204 C = 8042.834990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.233 3.767 3 H 0.051 0.949 4 C -0.531 4.531 5 H 0.078 0.922 6 C 0.082 3.918 7 N -0.888 5.888 8 Si 0.874 3.126 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.261 1.261 12 N -0.699 5.699 13 C 0.513 3.487 14 O -0.550 6.550 15 C -0.118 4.118 16 H 0.103 0.897 17 C -0.118 4.118 18 C -0.132 4.132 19 C 0.517 3.483 20 O -0.559 6.559 21 N -0.598 5.598 22 C 0.065 3.935 23 C 0.206 3.794 24 H 0.094 0.906 25 C -0.098 4.098 26 C -0.106 4.106 27 C -0.132 4.132 28 C -0.116 4.116 29 C -0.127 4.127 30 C -0.066 4.066 31 H 0.029 0.971 32 H 0.051 0.949 33 H 0.046 0.954 34 H 0.268 0.732 35 H 0.393 0.607 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.103 0.897 40 H 0.090 0.910 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.117 0.883 46 H 0.120 0.880 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.615 0.832 18.468 18.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.131 3.869 3 H 0.069 0.931 4 C -0.569 4.569 5 H 0.096 0.904 6 C -0.123 4.123 7 N -0.524 5.524 8 Si 0.701 3.299 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.185 1.185 12 N -0.347 5.347 13 C 0.297 3.703 14 O -0.430 6.430 15 C -0.140 4.140 16 H 0.121 0.879 17 C -0.156 4.156 18 C -0.172 4.172 19 C 0.306 3.694 20 O -0.439 6.439 21 N -0.329 5.329 22 C -0.078 4.078 23 C 0.102 3.898 24 H 0.112 0.888 25 C -0.099 4.099 26 C -0.124 4.124 27 C -0.150 4.150 28 C -0.134 4.134 29 C -0.145 4.145 30 C -0.084 4.084 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.226 0.774 36 H 0.098 0.902 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.108 0.892 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.134 0.866 44 H 0.136 0.864 45 H 0.135 0.865 46 H 0.138 0.862 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.470 1.478 18.762 18.982 hybrid contribution -0.076 0.460 -0.347 0.581 sum -2.546 1.939 18.416 18.691 Atomic orbital electron populations 1.22211 0.98610 1.00530 0.99222 1.19122 0.90856 0.94297 0.82650 0.93144 1.20998 1.45359 0.95610 0.94968 0.90352 1.24934 0.93592 0.98581 0.95150 1.69874 1.44561 1.36235 1.01711 0.86900 0.79725 0.85887 0.77411 1.19864 1.21215 1.18507 1.46625 1.64516 1.13865 1.09671 1.19971 0.78552 0.87429 0.84323 1.90615 1.51600 1.15875 1.84867 1.21676 0.99044 0.99097 0.94212 0.87911 1.21724 0.94727 1.00385 0.98736 1.21679 1.04864 0.99378 0.91286 1.20249 0.78057 0.79834 0.91249 1.90687 1.49842 1.66039 1.37300 1.47254 1.46139 1.30443 1.09100 1.21880 1.02580 0.98547 0.84752 1.19603 0.90196 0.95750 0.84220 0.88789 1.19774 0.95303 0.95517 0.99328 1.20912 0.94317 0.99061 0.98099 1.21018 0.95516 0.97183 1.01306 1.21147 0.99540 0.94630 0.98082 1.21168 0.94846 0.99984 0.98539 1.21197 0.95436 0.95746 0.96051 0.95215 0.92991 0.93511 0.92193 0.77366 0.90206 0.88960 0.87636 0.87893 0.89184 0.92293 0.91385 0.86583 0.86409 0.86458 0.86180 0.84622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.06 9.47 37.16 0.35 -2.71 16 2 C 0.23 5.16 2.22 -69.08 -0.15 5.01 16 3 H 0.05 1.22 4.73 -51.93 -0.25 0.98 16 4 C -0.53 -13.55 9.05 -34.44 -0.31 -13.86 16 5 H 0.08 2.11 8.06 -52.49 -0.42 1.69 16 6 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 7 N -0.89 -25.33 13.96 55.43 0.77 -24.56 16 8 Si 0.87 20.76 26.99 -169.99 -4.59 16.17 16 9 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 11 H -0.26 -6.08 6.82 56.52 0.39 -5.70 16 12 N -0.70 -12.58 4.92 -54.93 -0.27 -12.86 16 13 C 0.51 8.51 6.91 -10.99 -0.08 8.43 16 14 O -0.55 -10.55 12.37 5.56 0.07 -10.48 16 15 C -0.12 -1.47 2.02 -91.63 -0.18 -1.65 16 16 H 0.10 1.17 8.05 -51.93 -0.42 0.75 16 17 C -0.12 -1.26 5.28 -26.51 -0.14 -1.40 16 18 C -0.13 -1.31 6.03 -28.09 -0.17 -1.48 16 19 C 0.52 6.55 7.47 -11.87 -0.09 6.46 16 20 O -0.56 -8.83 15.95 5.56 0.09 -8.74 16 21 N -0.60 -7.05 2.60 -176.49 -0.46 -7.51 16 22 C 0.06 0.70 9.62 59.84 0.58 1.27 16 23 C 0.21 2.54 2.17 -69.51 -0.15 2.39 16 24 H 0.09 1.26 7.62 -51.93 -0.40 0.86 16 25 C -0.10 -1.24 3.66 -104.63 -0.38 -1.62 16 26 C -0.11 -1.21 7.15 -39.58 -0.28 -1.49 16 27 C -0.13 -1.41 10.05 -39.59 -0.40 -1.81 16 28 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 29 C -0.13 -1.54 10.05 -39.58 -0.40 -1.93 16 30 C -0.07 -0.89 8.09 -39.59 -0.32 -1.21 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.39 6.22 7.96 -40.82 -0.32 5.89 16 36 H 0.08 0.90 8.13 -51.93 -0.42 0.48 16 37 H 0.09 0.94 7.41 -51.93 -0.39 0.55 16 38 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.09 1.04 6.59 -51.93 -0.34 0.70 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.69 5.45 -51.93 -0.28 0.41 16 43 H 0.12 1.26 7.52 -52.49 -0.39 0.86 16 44 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 45 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 46 H 0.12 1.27 8.06 -52.49 -0.42 0.84 16 47 H 0.14 1.97 6.83 -52.48 -0.36 1.61 16 LS Contribution 372.26 15.07 5.61 5.61 Total: -1.00 -31.08 372.26 -8.35 -39.43 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.95 Total: 8.09 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -2.62 Total: -5.16 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.04 Total: -44.92 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.16 Total: -19.22 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -4.59 Total: 16.17 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -31.08 -8.35 -39.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171801974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.974 kcal (2) G-P(sol) polarization free energy of solvation -31.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds