Wall clock time and date at job start Tue Mar 31 2020 15:50:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47093 * 2 1 4 4 C 1.50704 * 109.46955 * 239.99984 * 2 1 3 5 5 H 1.07991 * 119.99936 * 275.00546 * 4 2 1 6 6 C 1.37876 * 119.99897 * 95.00261 * 4 2 1 7 7 N 1.31507 * 120.00299 * 184.91786 * 6 4 2 8 8 Si 1.86803 * 120.00049 * 4.91757 * 6 4 2 9 9 H 1.48498 * 109.47359 * 84.82936 * 8 6 4 10 10 H 1.48501 * 109.47135 * 204.83523 * 8 6 4 11 11 H 1.48503 * 109.47019 * 324.83209 * 8 6 4 12 12 N 1.46499 * 109.47229 * 120.00435 * 2 1 3 13 13 C 1.34776 * 119.99722 * 275.00033 * 12 2 1 14 14 O 1.21281 * 120.00134 * 359.97438 * 13 12 2 15 15 C 1.50700 * 119.99849 * 179.97438 * 13 12 2 16 16 H 1.08996 * 109.60236 * 299.67295 * 15 13 12 17 17 C 1.53346 * 109.60334 * 59.99902 * 15 13 12 18 18 C 1.53072 * 108.42461 * 187.28938 * 17 15 13 19 19 C 1.50187 * 109.88963 * 311.09599 * 18 17 15 20 20 O 1.21278 * 118.24281 * 197.58259 * 19 18 17 21 21 N 1.33353 * 123.50744 * 17.86249 * 19 18 17 22 22 C 1.46494 * 117.94783 * 177.47189 * 21 19 18 23 23 C 1.45775 * 124.09147 * 357.20782 * 21 19 18 24 24 H 1.09002 * 109.51004 * 259.17236 * 23 21 19 25 25 C 1.50694 * 109.15723 * 139.75455 * 23 21 19 26 26 C 1.38235 * 120.00448 * 318.85919 * 25 23 21 27 27 C 1.38231 * 120.00175 * 179.80996 * 26 25 23 28 28 C 1.38233 * 120.00222 * 0.41831 * 27 26 25 29 29 C 1.38242 * 119.99727 * 359.81466 * 28 27 26 30 30 C 1.38226 * 119.99760 * 359.97438 * 29 28 27 31 31 H 1.09004 * 109.46578 * 295.03507 * 1 2 3 32 32 H 1.08997 * 109.47317 * 55.03422 * 1 2 3 33 33 H 1.08997 * 109.47777 * 175.03663 * 1 2 3 34 34 H 0.96999 * 120.00233 * 180.02562 * 7 6 4 35 35 H 0.97002 * 120.00449 * 94.99251 * 12 2 1 36 36 H 1.08991 * 109.67613 * 67.55227 * 17 15 13 37 37 H 1.08992 * 109.70281 * 307.03316 * 17 15 13 38 38 H 1.09001 * 109.40042 * 190.97130 * 18 17 15 39 39 H 1.09000 * 109.40632 * 71.21962 * 18 17 15 40 40 H 1.09006 * 109.47226 * 0.02562 * 22 21 19 41 41 H 1.09005 * 109.47334 * 119.99817 * 22 21 19 42 42 H 1.08991 * 109.47657 * 240.00519 * 22 21 19 43 43 H 1.08000 * 119.99677 * 359.97438 * 26 25 23 44 44 H 1.08007 * 120.00018 * 180.20978 * 27 26 25 45 45 H 1.08000 * 120.00391 * 179.79040 * 28 27 26 46 46 H 1.07998 * 119.99645 * 179.97438 * 29 28 27 47 47 H 1.08006 * 119.99687 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.1354 -1.7854 -1.2291 6 6 2.3603 0.0121 -2.3581 7 7 2.7059 -0.6131 -3.4622 8 14 2.3137 1.8791 -2.3174 9 1 3.5992 2.3948 -1.7821 10 1 2.1058 2.3991 -3.6927 11 1 1.1988 2.3275 -1.4449 12 7 2.0184 -0.6907 1.1961 13 6 2.1471 -0.0184 2.3571 14 8 1.8591 1.1585 2.4115 15 6 2.6489 -0.7290 3.5876 16 1 1.9743 -1.5477 3.8378 17 6 4.0546 -1.2826 3.3248 18 6 4.4635 -2.1506 4.5174 19 6 4.2102 -1.4100 5.7992 20 8 4.7629 -1.7995 6.8060 21 7 3.4059 -0.3502 5.8904 22 6 3.2025 0.2454 7.2133 23 6 2.7210 0.2559 4.7553 24 1 3.2595 1.1496 4.4401 25 6 1.3241 0.6412 5.1689 26 6 0.5802 -0.2082 5.9665 27 6 -0.6997 0.1470 6.3491 28 6 -1.2392 1.3477 5.9269 29 6 -0.4971 2.1950 5.1253 30 6 0.7844 1.8417 4.7464 31 1 -0.3632 0.4349 0.9312 32 1 -0.3634 0.5889 -0.8421 33 1 -0.3634 -1.0237 -0.0889 34 1 2.9369 -0.1047 -4.2554 35 1 2.2490 -1.6319 1.1526 36 1 4.7586 -0.4581 3.2125 37 1 4.0481 -1.8858 2.4171 38 1 5.5237 -2.3926 4.4425 39 1 3.8816 -3.0723 4.5109 40 1 3.7783 -0.3095 7.9541 41 1 3.5340 1.2837 7.1992 42 1 2.1442 0.2054 7.4710 43 1 1.0001 -1.1482 6.2929 44 1 -1.2796 -0.5151 6.9751 45 1 -2.2404 1.6237 6.2230 46 1 -0.9187 3.1328 4.7952 47 1 1.3640 2.5034 4.1197 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171801974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:29 Heat of formation + Delta-G solvation = -63.932475 kcal Electronic energy + Delta-G solvation = -29507.312261 eV Core-core repulsion = 25653.968169 eV Total energy + Delta-G solvation = -3853.344092 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.27766 -40.47452 -39.85864 -37.50177 -36.58287 -35.33904 -34.28522 -32.70137 -31.82614 -31.59247 -29.73475 -28.16158 -27.30285 -25.75616 -24.21403 -23.51325 -22.61408 -22.22487 -21.18604 -19.70925 -19.30929 -18.22234 -17.93632 -17.76584 -17.08825 -16.80091 -16.59222 -16.21223 -15.76320 -15.66455 -15.54507 -15.16651 -14.85427 -14.60185 -14.43618 -14.28227 -14.17993 -14.05079 -14.03556 -13.39670 -13.21056 -13.19137 -13.04380 -12.90037 -12.85019 -12.75789 -12.56702 -12.39796 -12.01701 -11.91611 -11.85695 -11.82219 -11.19828 -10.82580 -10.78174 -10.59195 -9.95395 -9.73096 -9.69080 -9.56663 -8.36271 -6.41979 0.38787 0.56006 1.30884 1.36248 1.45236 1.54308 1.79016 1.85836 2.28792 2.49542 2.87647 3.05653 3.41155 3.51189 3.59136 3.72166 3.94669 4.01551 4.16624 4.22310 4.27337 4.32293 4.38435 4.48581 4.51916 4.58122 4.59318 4.69550 4.76394 4.78627 4.86407 4.87689 4.90888 4.92065 5.08333 5.11369 5.13716 5.20265 5.27507 5.40618 5.48763 5.58062 5.66598 5.75671 5.80747 6.12960 6.15672 6.35279 6.64168 6.94119 7.04996 7.24379 7.50106 8.78625 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.012711 B = 0.004244 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.226848 B = 6595.320204 C = 8042.834990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.238 3.762 3 H 0.032 0.968 4 C -0.523 4.523 5 H 0.058 0.942 6 C 0.034 3.966 7 N -0.931 5.931 8 Si 0.924 3.076 9 H -0.274 1.274 10 H -0.282 1.282 11 H -0.255 1.255 12 N -0.700 5.700 13 C 0.514 3.486 14 O -0.574 6.574 15 C -0.106 4.106 16 H 0.122 0.878 17 C -0.113 4.113 18 C -0.123 4.123 19 C 0.513 3.487 20 O -0.593 6.593 21 N -0.593 5.593 22 C 0.066 3.934 23 C 0.213 3.787 24 H 0.079 0.921 25 C -0.106 4.106 26 C -0.108 4.108 27 C -0.131 4.131 28 C -0.117 4.117 29 C -0.138 4.138 30 C -0.087 4.087 31 H 0.037 0.963 32 H 0.043 0.957 33 H 0.054 0.946 34 H 0.269 0.731 35 H 0.405 0.595 36 H 0.072 0.928 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.126 0.874 40 H 0.082 0.918 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.125 0.875 44 H 0.143 0.857 45 H 0.142 0.858 46 H 0.129 0.871 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.584 0.356 20.163 20.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.134 3.866 3 H 0.050 0.950 4 C -0.561 4.561 5 H 0.076 0.924 6 C -0.166 4.166 7 N -0.569 5.569 8 Si 0.750 3.250 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.180 1.180 12 N -0.349 5.349 13 C 0.300 3.700 14 O -0.455 6.455 15 C -0.128 4.128 16 H 0.140 0.860 17 C -0.151 4.151 18 C -0.163 4.163 19 C 0.304 3.696 20 O -0.475 6.475 21 N -0.324 5.324 22 C -0.077 4.077 23 C 0.109 3.891 24 H 0.097 0.903 25 C -0.107 4.107 26 C -0.126 4.126 27 C -0.149 4.149 28 C -0.135 4.135 29 C -0.156 4.156 30 C -0.105 4.105 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.240 0.760 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.135 0.865 39 H 0.144 0.856 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.142 0.858 44 H 0.161 0.839 45 H 0.160 0.840 46 H 0.147 0.853 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.445 1.002 20.479 20.791 hybrid contribution 0.184 0.605 -0.790 1.012 sum -3.260 1.607 19.690 20.023 Atomic orbital electron populations 1.22096 0.97450 1.01005 0.99300 1.18816 0.91617 0.93162 0.82959 0.94973 1.21197 1.44009 0.94822 0.96084 0.92422 1.25573 0.93883 1.02107 0.95043 1.69974 1.46808 1.37667 1.02488 0.86091 0.79690 0.81762 0.77478 1.19914 1.20822 1.17951 1.46313 1.65100 1.14415 1.09085 1.20549 0.77556 0.87141 0.84798 1.90625 1.52300 1.17228 1.85327 1.21585 1.00293 0.99042 0.91876 0.86006 1.21710 0.93286 1.00435 0.99649 1.21686 1.06047 0.99474 0.89053 1.20738 0.77431 0.79721 0.91750 1.90680 1.51138 1.67025 1.38638 1.47255 1.45694 1.30206 1.09232 1.21908 1.03001 0.98630 0.84113 1.19442 0.90249 0.95131 0.84316 0.90311 1.19770 0.95361 0.95594 0.99956 1.21031 0.94686 0.99124 0.97793 1.21360 0.95287 0.97360 1.00860 1.21454 1.00455 0.94331 0.97211 1.21366 0.94548 1.00798 0.98911 1.21142 0.96212 0.96204 0.96968 0.94401 0.93765 0.92669 0.92152 0.75976 0.90933 0.87954 0.86452 0.85633 0.89947 0.91783 0.90506 0.85753 0.83901 0.84033 0.85344 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.65 9.47 71.98 0.68 -4.97 16 2 C 0.24 10.38 2.22 44.25 0.10 10.47 16 3 H 0.03 1.54 4.73 -2.39 -0.01 1.53 16 4 C -0.52 -26.63 9.05 25.60 0.23 -26.40 16 5 H 0.06 3.13 8.06 -2.92 -0.02 3.10 16 6 C 0.03 1.85 5.47 84.66 0.46 2.32 16 7 N -0.93 -53.78 13.96 21.45 0.30 -53.48 16 8 Si 0.92 42.88 26.99 68.60 1.85 44.73 16 9 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 10 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 11 H -0.26 -11.51 6.82 99.48 0.68 -10.83 16 12 N -0.70 -24.29 4.92 -446.09 -2.20 -26.48 16 13 C 0.51 16.38 6.91 87.66 0.61 16.98 16 14 O -0.57 -21.76 12.37 -3.03 -0.04 -21.80 16 15 C -0.11 -2.43 2.02 -11.45 -0.02 -2.45 16 16 H 0.12 2.39 8.05 -2.39 -0.02 2.37 16 17 C -0.11 -2.18 5.28 30.73 0.16 -2.01 16 18 C -0.12 -2.12 6.03 29.71 0.18 -1.94 16 19 C 0.51 12.09 7.47 87.72 0.66 12.74 16 20 O -0.59 -17.96 15.95 -3.02 -0.05 -18.01 16 21 N -0.59 -13.15 2.60 -831.48 -2.16 -15.31 16 22 C 0.07 1.34 9.62 127.77 1.23 2.57 16 23 C 0.21 5.00 2.17 44.36 0.10 5.10 16 24 H 0.08 2.11 7.62 -2.39 -0.02 2.09 16 25 C -0.11 -2.53 3.66 -19.87 -0.07 -2.60 16 26 C -0.11 -2.22 7.15 22.27 0.16 -2.06 16 27 C -0.13 -2.40 10.05 22.27 0.22 -2.18 16 28 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 29 C -0.14 -3.17 10.05 22.27 0.22 -2.94 16 30 C -0.09 -2.29 8.09 22.27 0.18 -2.11 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 35 H 0.40 12.13 7.96 -92.71 -0.74 11.39 16 36 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 37 H 0.10 1.82 7.41 -2.39 -0.02 1.80 16 38 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.08 1.84 6.59 -2.38 -0.02 1.83 16 41 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.08 1.43 5.45 -2.39 -0.01 1.42 16 43 H 0.12 2.33 7.52 -2.91 -0.02 2.31 16 44 H 0.14 1.89 8.06 -2.91 -0.02 1.87 16 45 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 46 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 47 H 0.12 3.46 6.83 -2.91 -0.02 3.44 16 Total: -1.00 -66.85 372.26 3.24 -63.61 By element: Atomic # 1 Polarization: 28.00 SS G_CDS: 0.22 Total: 28.22 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 5.32 Total: -1.49 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -4.06 Total: -95.27 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -0.09 Total: -39.80 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.85 Total: 44.73 kcal Total: -66.85 3.24 -63.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171801974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.318 kcal (2) G-P(sol) polarization free energy of solvation -66.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds