Wall clock time and date at job start Tue Mar 31 2020 17:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47378 * 2 1 4 4 C 1.46501 * 119.99735 * 269.99864 * 3 2 1 5 5 C 1.50698 * 109.47190 * 269.99726 * 4 3 2 6 6 H 1.08003 * 120.00015 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99757 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00526 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99604 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47699 * 59.99746 * 9 7 5 11 11 H 1.48500 * 109.46771 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46980 * 299.99493 * 9 7 5 13 13 C 1.34769 * 120.00221 * 89.99905 * 3 2 1 14 14 O 1.21278 * 120.00410 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99812 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.46673 * 180.02562 * 15 13 3 17 17 C 1.46898 * 111.00516 * 66.04595 * 16 15 13 18 18 C 1.46903 * 110.99439 * 190.00132 * 16 15 13 19 19 C 1.50707 * 109.47124 * 169.99578 * 18 16 15 20 20 C 1.33998 * 124.91908 * 89.99839 * 19 18 16 21 21 C 1.46785 * 106.18190 * 180.02562 * 20 19 18 22 22 C 1.39405 * 134.36624 * 179.97438 * 21 20 19 23 23 C 1.36748 * 119.71388 * 179.97438 * 22 21 20 24 24 C 1.38738 * 120.41266 * 0.04525 * 23 22 21 25 25 C 1.37848 * 120.69043 * 359.97438 * 24 23 22 26 26 C 1.38937 * 119.81556 * 0.02562 * 25 24 23 27 27 O 1.34443 * 124.92313 * 270.02740 * 19 18 16 28 28 H 1.09004 * 109.46634 * 60.00214 * 1 2 3 29 29 H 1.08997 * 109.47212 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46871 * 300.00203 * 1 2 3 31 31 H 1.09001 * 109.47335 * 239.99711 * 2 1 3 32 32 H 1.09000 * 109.47335 * 119.99719 * 2 1 3 33 33 H 1.08997 * 109.47037 * 30.00057 * 4 3 2 34 34 H 1.08996 * 109.46920 * 149.99539 * 4 3 2 35 35 H 0.96993 * 120.00073 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47424 * 60.00431 * 15 13 3 37 37 H 1.09001 * 109.46853 * 299.99825 * 15 13 3 38 38 H 1.09000 * 109.46969 * 183.94958 * 17 16 15 39 39 H 1.09001 * 109.47061 * 303.95111 * 17 16 15 40 40 H 1.09003 * 109.47061 * 63.95208 * 17 16 15 41 41 H 1.09002 * 109.47599 * 49.99927 * 18 16 15 42 42 H 1.08998 * 109.47042 * 289.99115 * 18 16 15 43 43 H 1.08001 * 126.91274 * 0.02562 * 20 19 18 44 44 H 1.07996 * 120.14611 * 359.97438 * 22 21 20 45 45 H 1.07993 * 119.79240 * 180.02562 * 23 22 21 46 46 H 1.08003 * 119.65346 * 180.02562 * 24 23 22 47 47 H 1.08000 * 120.09001 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0961 7 6 4.1494 2.3904 -2.8775 8 7 3.3495 3.1264 -3.6177 9 14 5.9135 2.0962 -3.4170 10 1 6.1404 0.6395 -3.5953 11 1 6.1614 2.7973 -4.7024 12 1 6.8414 2.6186 -2.3819 13 6 2.2430 2.0166 1.1671 14 8 2.6469 3.1601 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3099 2.2063 3.5888 17 6 1.3826 3.3450 3.6271 18 6 2.3068 1.4816 4.8666 19 6 2.8710 2.3671 5.9477 20 6 2.1500 3.1990 6.7117 21 6 3.1031 3.8526 7.6168 22 6 2.9900 4.8025 8.6308 23 6 4.1078 5.2122 9.3035 24 6 5.3520 4.6892 8.9822 25 6 5.4833 3.7495 7.9823 26 6 4.3602 3.3196 7.2864 27 8 4.1705 2.4372 6.2850 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1409 -1.1385 35 1 3.6758 3.5174 -4.4432 36 1 2.6229 0.4187 2.5299 37 1 0.9445 1.0115 2.5302 38 1 1.6826 4.0313 4.4189 39 1 1.4046 3.8639 2.6688 40 1 0.3725 2.9846 3.8221 41 1 2.9183 0.5837 4.7766 42 1 1.2851 1.2013 5.1228 43 1 1.0824 3.3569 6.6700 44 1 2.0237 5.2130 8.8841 45 1 4.0216 5.9477 10.0896 46 1 6.2268 5.0212 9.5217 47 1 6.4567 3.3492 7.7399 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175174723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:27 Heat of formation + Delta-G solvation = 10.660653 kcal Electronic energy + Delta-G solvation = -27697.882373 eV Core-core repulsion = 23847.772882 eV Total energy + Delta-G solvation = -3850.109491 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.57389 -39.37897 -38.10123 -36.90436 -35.18355 -33.01788 -32.74416 -30.64879 -30.53176 -30.07428 -28.50498 -27.28206 -26.44303 -23.68360 -23.04002 -22.93524 -22.09730 -21.55842 -20.90661 -18.36038 -17.50301 -17.05073 -16.74561 -16.37202 -16.27265 -15.77290 -15.51249 -15.30060 -14.70186 -14.38739 -14.33439 -14.11037 -13.88324 -13.53556 -13.35211 -13.21530 -12.85154 -12.74620 -12.45451 -12.42035 -12.23201 -12.00076 -11.73853 -11.71519 -11.53811 -11.24801 -11.15861 -11.06708 -10.90501 -10.71485 -10.49954 -10.25804 -10.09919 -9.61242 -8.92663 -8.78566 -8.41350 -8.40255 -8.17125 -7.62899 -6.01700 -4.06101 0.72573 1.19958 2.14087 2.57002 3.34196 3.38718 3.39844 3.46536 3.54326 3.68224 4.15671 4.26231 4.48176 4.49332 4.73190 4.85444 4.94468 4.97202 5.03272 5.07228 5.22585 5.24378 5.26724 5.31825 5.33170 5.46732 5.53057 5.58626 5.64825 5.66560 5.69566 5.76216 6.00022 6.03722 6.07300 6.21314 6.24000 6.25968 6.30378 6.45080 6.49510 6.83268 6.96081 7.10448 7.12862 7.46548 7.57877 7.95103 8.26429 8.44713 8.93622 9.14526 9.59033 11.06359 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.002572 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.898483 B =10885.587170 C =12074.221435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.249 3.751 5 C -0.525 4.525 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.522 6.522 15 C 0.038 3.962 16 N -0.520 5.520 17 C 0.015 3.985 18 C 0.124 3.876 19 C 0.061 3.939 20 C -0.208 4.208 21 C -0.128 4.128 22 C -0.073 4.073 23 C -0.139 4.139 24 C -0.098 4.098 25 C -0.105 4.105 26 C 0.054 3.946 27 O -0.183 6.183 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.083 0.917 32 H 0.063 0.937 33 H 0.031 0.969 34 H 0.042 0.958 35 H 0.263 0.737 36 H 0.100 0.900 37 H 0.060 0.940 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.020 0.980 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.156 0.844 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.133 0.867 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.124 -3.872 23.915 24.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.201 1.201 13 C 0.292 3.708 14 O -0.397 6.397 15 C -0.093 4.093 16 N -0.244 5.244 17 C -0.133 4.133 18 C -0.004 4.004 19 C 0.013 3.987 20 C -0.228 4.228 21 C -0.129 4.129 22 C -0.091 4.091 23 C -0.157 4.157 24 C -0.116 4.116 25 C -0.124 4.124 26 C 0.006 3.994 27 O -0.083 6.083 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.067 0.933 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.073 0.927 36 H 0.118 0.882 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.039 0.961 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.173 0.827 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.151 0.849 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.227 -3.119 23.493 24.073 hybrid contribution 0.068 -0.443 -0.262 0.519 sum -4.160 -3.562 23.230 23.867 Atomic orbital electron populations 1.22224 0.96896 1.01358 1.02234 1.21407 0.93394 0.84361 1.02659 1.48262 1.64062 1.13232 1.07660 1.19239 0.96214 0.93581 0.78023 1.21404 0.96945 1.31854 1.06192 0.92524 1.24928 0.97811 0.94936 0.96412 1.69917 1.35716 1.33475 1.14407 0.86569 0.84910 0.78206 0.77805 1.20280 1.21219 1.20137 1.20033 0.78949 0.87153 0.84631 1.90653 1.44554 1.17860 1.86684 1.22108 1.00571 0.96015 0.90598 1.61508 1.53244 1.09187 1.00448 1.22676 0.91736 0.93570 1.05302 1.20642 0.99302 0.94381 0.86040 1.22098 0.80495 0.99151 0.96981 1.22211 0.99996 1.01100 0.99474 1.19942 0.92997 1.00513 0.99420 1.20274 0.99173 0.95548 0.94136 1.20756 0.92380 1.01437 1.01100 1.20905 0.98008 0.96096 0.96627 1.19978 0.96004 0.99628 0.96749 1.19657 0.95873 0.92943 0.90914 1.83999 1.27214 1.52461 1.44669 0.91997 0.92189 0.93272 0.89888 0.91889 0.95083 0.93969 0.92704 0.88239 0.92213 0.91284 0.88567 0.96142 0.88501 0.91097 0.82658 0.85669 0.85497 0.84900 0.85036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.11 1.63 5.93 -4.04 -0.02 1.61 16 3 N -0.60 -12.41 2.46 -175.06 -0.43 -12.84 16 4 C 0.25 6.46 5.16 -5.19 -0.03 6.44 16 5 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 6 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 9 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.51 10.40 7.36 -10.99 -0.08 10.31 16 14 O -0.52 -13.14 13.91 5.56 0.08 -13.06 16 15 C 0.04 0.55 4.00 -4.97 -0.02 0.53 16 16 N -0.52 -7.75 4.49 -245.81 -1.10 -8.86 16 17 C 0.01 0.21 8.89 60.06 0.53 0.75 16 18 C 0.12 1.40 5.47 -4.97 -0.03 1.37 16 19 C 0.06 0.79 6.16 -35.80 -0.22 0.57 16 20 C -0.21 -2.44 9.54 -37.62 -0.36 -2.80 16 21 C -0.13 -1.58 6.40 -105.16 -0.67 -2.26 16 22 C -0.07 -0.74 10.05 -39.69 -0.40 -1.13 16 23 C -0.14 -1.21 9.98 -39.94 -0.40 -1.61 16 24 C -0.10 -0.87 10.01 -39.54 -0.40 -1.27 16 25 C -0.11 -1.15 10.07 -39.47 -0.40 -1.54 16 26 C 0.05 0.72 7.42 -38.48 -0.29 0.44 16 27 O -0.18 -2.69 10.58 3.91 0.04 -2.65 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.59 7.22 -51.93 -0.38 0.21 16 31 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 32 H 0.06 0.79 6.44 -51.93 -0.33 0.45 16 33 H 0.03 0.81 8.07 -51.93 -0.42 0.40 16 34 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.10 1.27 7.19 -51.93 -0.37 0.90 16 37 H 0.06 0.72 7.17 -51.93 -0.37 0.34 16 38 H 0.07 0.97 6.29 -51.93 -0.33 0.65 16 39 H 0.10 1.73 5.83 -51.93 -0.30 1.42 16 40 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.10 0.97 7.93 -51.93 -0.41 0.56 16 42 H 0.07 0.61 8.12 -51.93 -0.42 0.19 16 43 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 44 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 45 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 46 H 0.13 0.79 8.06 -52.48 -0.42 0.37 16 47 H 0.13 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 387.70 15.07 5.84 5.84 Total: -1.00 -35.24 387.70 -9.74 -44.98 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -7.07 Total: -0.49 kcal Atomic # 6 Polarization: -1.18 SS G_CDS: -2.81 Total: -3.99 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.80 Total: -47.77 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: 0.12 Total: -15.71 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.24 -9.74 -44.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175174723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.638 kcal (2) G-P(sol) polarization free energy of solvation -35.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds