Wall clock time and date at job start Tue Mar 31 2020 17:05:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47378 * 2 1 4 4 C 1.46501 * 119.99735 * 269.99864 * 3 2 1 5 5 C 1.50698 * 109.47190 * 269.99726 * 4 3 2 6 6 H 1.08003 * 120.00015 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99757 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00526 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99604 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47699 * 59.99746 * 9 7 5 11 11 H 1.48500 * 109.46771 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46980 * 299.99493 * 9 7 5 13 13 C 1.34769 * 120.00221 * 89.99905 * 3 2 1 14 14 O 1.21278 * 120.00410 * 180.02562 * 13 3 2 15 15 C 1.50705 * 119.99812 * 0.02562 * 13 3 2 16 16 N 1.46903 * 109.46673 * 180.02562 * 15 13 3 17 17 C 1.46898 * 111.00516 * 66.04595 * 16 15 13 18 18 C 1.46903 * 110.99439 * 190.00132 * 16 15 13 19 19 C 1.50707 * 109.47124 * 169.99578 * 18 16 15 20 20 C 1.33998 * 124.91908 * 89.99839 * 19 18 16 21 21 C 1.46785 * 106.18190 * 180.02562 * 20 19 18 22 22 C 1.39405 * 134.36624 * 179.97438 * 21 20 19 23 23 C 1.36748 * 119.71388 * 179.97438 * 22 21 20 24 24 C 1.38738 * 120.41266 * 0.04525 * 23 22 21 25 25 C 1.37848 * 120.69043 * 359.97438 * 24 23 22 26 26 C 1.38937 * 119.81556 * 0.02562 * 25 24 23 27 27 O 1.34443 * 124.92313 * 270.02740 * 19 18 16 28 28 H 1.09004 * 109.46634 * 60.00214 * 1 2 3 29 29 H 1.08997 * 109.47212 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46871 * 300.00203 * 1 2 3 31 31 H 1.09001 * 109.47335 * 239.99711 * 2 1 3 32 32 H 1.09000 * 109.47335 * 119.99719 * 2 1 3 33 33 H 1.08997 * 109.47037 * 30.00057 * 4 3 2 34 34 H 1.08996 * 109.46920 * 149.99539 * 4 3 2 35 35 H 0.96993 * 120.00073 * 179.97438 * 8 7 5 36 36 H 1.08996 * 109.47424 * 60.00431 * 15 13 3 37 37 H 1.09001 * 109.46853 * 299.99825 * 15 13 3 38 38 H 1.09000 * 109.46969 * 183.94958 * 17 16 15 39 39 H 1.09001 * 109.47061 * 303.95111 * 17 16 15 40 40 H 1.09003 * 109.47061 * 63.95208 * 17 16 15 41 41 H 1.09002 * 109.47599 * 49.99927 * 18 16 15 42 42 H 1.08998 * 109.47042 * 289.99115 * 18 16 15 43 43 H 1.08001 * 126.91274 * 0.02562 * 20 19 18 44 44 H 1.07996 * 120.14611 * 359.97438 * 22 21 20 45 45 H 1.07993 * 119.79240 * 180.02562 * 23 22 21 46 46 H 1.08003 * 119.65346 * 180.02562 * 24 23 22 47 47 H 1.08000 * 120.09001 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0717 -1.2688 5 6 3.6859 1.8349 -1.7038 6 1 4.3427 1.2301 -1.0961 7 6 4.1494 2.3904 -2.8775 8 7 3.3495 3.1264 -3.6177 9 14 5.9135 2.0962 -3.4170 10 1 6.1404 0.6395 -3.5953 11 1 6.1614 2.7973 -4.7024 12 1 6.8414 2.6186 -2.3819 13 6 2.2430 2.0166 1.1671 14 8 2.6469 3.1601 1.1672 15 6 1.9923 1.3060 2.4723 16 7 2.3099 2.2063 3.5888 17 6 1.3826 3.3450 3.6271 18 6 2.3068 1.4816 4.8666 19 6 2.8710 2.3671 5.9477 20 6 2.1500 3.1990 6.7117 21 6 3.1031 3.8526 7.6168 22 6 2.9900 4.8025 8.6308 23 6 4.1078 5.2122 9.3035 24 6 5.3520 4.6892 8.9822 25 6 5.4833 3.7495 7.9823 26 6 4.3602 3.3196 7.2864 27 8 4.1705 2.4372 6.2850 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5818 1.6876 -2.0284 34 1 2.0956 3.1409 -1.1385 35 1 3.6758 3.5174 -4.4432 36 1 2.6229 0.4187 2.5299 37 1 0.9445 1.0115 2.5302 38 1 1.6826 4.0313 4.4189 39 1 1.4046 3.8639 2.6688 40 1 0.3725 2.9846 3.8221 41 1 2.9183 0.5837 4.7766 42 1 1.2851 1.2013 5.1228 43 1 1.0824 3.3569 6.6700 44 1 2.0237 5.2130 8.8841 45 1 4.0216 5.9477 10.0896 46 1 6.2268 5.0212 9.5217 47 1 6.4567 3.3492 7.7399 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175174723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:26 Heat of formation + Delta-G solvation = -12.167128 kcal Electronic energy + Delta-G solvation = -27698.872260 eV Core-core repulsion = 23847.772882 eV Total energy + Delta-G solvation = -3851.099378 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.43523 -40.87807 -38.90723 -38.06176 -36.79376 -34.91018 -33.83967 -31.74918 -31.39937 -31.29630 -29.92131 -28.41773 -27.92232 -25.19635 -24.36993 -23.89309 -23.33930 -22.47927 -21.79059 -19.87927 -18.63445 -18.32164 -18.13787 -17.73729 -17.33196 -17.15246 -16.64600 -16.48555 -16.14499 -15.78863 -15.51629 -15.16319 -14.93481 -14.63769 -14.48737 -14.37768 -14.04427 -13.98512 -13.68425 -13.55553 -13.26811 -13.20543 -13.12417 -12.97525 -12.77184 -12.64922 -12.57843 -12.49343 -12.42613 -12.13381 -11.83566 -11.80342 -11.71422 -11.08977 -10.64284 -10.51638 -9.59685 -9.46148 -9.31310 -9.07090 -8.22177 -6.36711 -0.06589 0.40530 1.27955 1.34952 1.39871 1.46773 1.75699 1.89352 2.27822 2.42141 2.77666 3.04077 3.07194 3.40015 3.70393 3.72577 4.03754 4.08640 4.10741 4.17214 4.20406 4.27267 4.34337 4.38913 4.46100 4.47404 4.54267 4.58642 4.60259 4.68227 4.77021 4.94635 4.95938 5.00879 5.07675 5.12153 5.22972 5.25024 5.34994 5.41378 5.48516 5.51026 5.59301 5.75758 5.82431 5.91858 5.98415 6.08107 6.24311 6.71723 6.86191 7.29793 7.57124 8.84453 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014520 B = 0.002572 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1927.898483 B =10885.587170 C =12074.221435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.605 5.605 4 C 0.265 3.735 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.258 1.258 11 H -0.278 1.278 12 H -0.281 1.281 13 C 0.495 3.505 14 O -0.582 6.582 15 C 0.054 3.946 16 N -0.552 5.552 17 C 0.024 3.976 18 C 0.130 3.870 19 C 0.036 3.964 20 C -0.203 4.203 21 C -0.153 4.153 22 C -0.082 4.082 23 C -0.137 4.137 24 C -0.092 4.092 25 C -0.126 4.126 26 C 0.019 3.981 27 O -0.211 6.211 28 H 0.035 0.965 29 H 0.096 0.904 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.021 0.979 34 H -0.007 1.007 35 H 0.267 0.733 36 H 0.125 0.875 37 H 0.098 0.902 38 H 0.066 0.934 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.178 0.822 44 H 0.147 0.853 45 H 0.160 0.840 46 H 0.165 0.835 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.419 -5.505 26.443 27.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.183 1.183 11 H -0.203 1.203 12 H -0.206 1.206 13 C 0.283 3.717 14 O -0.462 6.462 15 C -0.076 4.076 16 N -0.277 5.277 17 C -0.123 4.123 18 C 0.003 3.997 19 C -0.012 4.012 20 C -0.222 4.222 21 C -0.154 4.154 22 C -0.100 4.100 23 C -0.154 4.154 24 C -0.109 4.109 25 C -0.145 4.145 26 C -0.028 4.028 27 O -0.113 6.113 28 H 0.054 0.946 29 H 0.114 0.886 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.121 0.879 33 H 0.039 0.961 34 H 0.011 0.989 35 H 0.076 0.924 36 H 0.143 0.857 37 H 0.116 0.884 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.195 0.805 44 H 0.165 0.835 45 H 0.178 0.822 46 H 0.183 0.817 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -4.552 -4.810 26.042 26.871 hybrid contribution 0.163 0.148 -0.949 0.974 sum -4.390 -4.662 25.093 25.897 Atomic orbital electron populations 1.22150 0.94538 1.03497 1.01620 1.21766 0.95307 0.81283 1.04014 1.48290 1.64201 1.15198 1.06070 1.18635 0.95079 0.91387 0.80553 1.21696 0.98013 1.31869 1.06404 0.93013 1.25851 1.02307 0.94542 0.96504 1.70040 1.37762 1.34253 1.14845 0.85505 0.79137 0.79109 0.77285 1.18274 1.20282 1.20636 1.21208 0.77393 0.86712 0.86374 1.90627 1.47129 1.20724 1.87726 1.22011 1.03303 0.95430 0.86812 1.61331 1.54202 1.09997 1.02159 1.22469 0.93504 0.93658 1.02706 1.20760 1.01389 0.93805 0.83709 1.22501 0.80146 1.00463 0.98077 1.22537 1.00915 1.00115 0.98683 1.20313 0.92886 1.01596 1.00583 1.20655 1.00829 0.94961 0.93526 1.21217 0.91778 1.01290 1.01160 1.21364 0.99462 0.94606 0.95502 1.20339 0.95959 1.00638 0.97551 1.20186 0.97335 0.93755 0.91571 1.83942 1.28470 1.53359 1.45553 0.94554 0.88555 0.91996 0.91179 0.87873 0.96054 0.98869 0.92446 0.85681 0.88395 0.91547 0.92866 0.93007 0.87324 0.87520 0.80467 0.83527 0.82234 0.81736 0.84297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.68 10.24 71.98 0.74 -2.94 16 2 C 0.10 2.86 5.93 86.38 0.51 3.38 16 3 N -0.61 -25.49 2.46 -826.17 -2.03 -27.52 16 4 C 0.27 14.54 5.16 85.63 0.44 14.99 16 5 C -0.54 -31.93 9.39 25.60 0.24 -31.69 16 6 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 7 C 0.01 0.40 5.46 84.66 0.46 0.86 16 8 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 9 Si 0.97 46.11 29.54 68.60 2.03 48.13 16 10 H -0.26 -11.49 7.11 99.48 0.71 -10.79 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -13.54 7.11 99.48 0.71 -12.84 16 13 C 0.49 20.59 7.36 87.66 0.65 21.23 16 14 O -0.58 -31.03 13.91 -3.02 -0.04 -31.08 16 15 C 0.05 1.46 4.00 85.56 0.34 1.80 16 16 N -0.55 -15.78 4.49 -931.61 -4.18 -19.97 16 17 C 0.02 0.70 8.89 127.69 1.14 1.83 16 18 C 0.13 2.62 5.47 85.56 0.47 3.09 16 19 C 0.04 0.90 6.16 24.72 0.15 1.05 16 20 C -0.20 -4.56 9.54 23.54 0.22 -4.34 16 21 C -0.15 -3.72 6.40 -20.21 -0.13 -3.85 16 22 C -0.08 -1.51 10.05 22.20 0.22 -1.28 16 23 C -0.14 -2.04 9.98 22.04 0.22 -1.82 16 24 C -0.09 -1.45 10.01 22.30 0.22 -1.22 16 25 C -0.13 -2.74 10.07 22.34 0.23 -2.52 16 26 C 0.02 0.51 7.42 22.99 0.17 0.68 16 27 O -0.21 -6.38 10.58 -8.93 -0.09 -6.48 16 28 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 29 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.27 7.22 -2.39 -0.02 1.25 16 31 H 0.07 2.22 8.07 -2.39 -0.02 2.20 16 32 H 0.10 2.18 6.44 -2.39 -0.02 2.16 16 33 H 0.02 1.19 8.07 -2.39 -0.02 1.17 16 34 H -0.01 -0.44 7.42 -2.39 -0.02 -0.45 16 35 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 36 H 0.13 2.73 7.19 -2.39 -0.02 2.72 16 37 H 0.10 1.91 7.17 -2.39 -0.02 1.89 16 38 H 0.07 1.88 6.29 -2.39 -0.02 1.87 16 39 H 0.05 2.00 5.83 -2.39 -0.01 1.99 16 40 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.11 1.90 7.93 -2.39 -0.02 1.88 16 42 H 0.11 1.38 8.12 -2.39 -0.02 1.37 16 43 H 0.18 2.94 8.06 -2.91 -0.02 2.92 16 44 H 0.15 1.94 8.06 -2.91 -0.02 1.91 16 45 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 46 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 47 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -84.24 387.70 3.22 -81.02 By element: Atomic # 1 Polarization: 12.81 SS G_CDS: 0.96 Total: 13.77 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 6.29 Total: -0.74 kcal Atomic # 7 Polarization: -98.71 SS G_CDS: -5.93 Total: -104.63 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -0.14 Total: -37.55 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -84.24 3.22 -81.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175174723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.857 kcal (2) G-P(sol) polarization free energy of solvation -84.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds