Wall clock time and date at job start Tue Mar 31 2020 16:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47525 * 2 1 4 4 C 1.50704 * 109.47202 * 239.99367 * 2 1 3 5 5 O 1.21275 * 120.00116 * 265.55079 * 4 2 1 6 6 N 1.34772 * 119.99803 * 85.55019 * 4 2 1 7 7 C 1.46510 * 119.99971 * 5.08338 * 6 4 2 8 8 C 1.46500 * 120.00311 * 185.07965 * 6 4 2 9 9 C 1.50703 * 109.46758 * 89.99987 * 8 6 4 10 10 H 1.08002 * 120.00187 * 0.02562 * 9 8 6 11 11 C 1.37877 * 119.99948 * 180.02562 * 9 8 6 12 12 N 1.31514 * 119.99868 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00100 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47277 * 59.99835 * 13 11 9 15 15 H 1.48501 * 109.47355 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46981 * 299.99926 * 13 11 9 17 17 N 1.46899 * 109.47160 * 119.99840 * 2 1 3 18 18 C 1.46902 * 111.00378 * 181.65029 * 17 2 1 19 19 C 1.46905 * 111.00137 * 305.60575 * 17 2 1 20 20 C 1.50697 * 109.47620 * 169.99934 * 19 17 2 21 21 C 1.33995 * 124.92466 * 89.97902 * 20 19 17 22 22 C 1.46780 * 106.18491 * 180.02562 * 21 20 19 23 23 C 1.39410 * 134.36844 * 180.02562 * 22 21 20 24 24 C 1.36739 * 119.71401 * 180.02562 * 23 22 21 25 25 C 1.38742 * 120.41931 * 359.96331 * 24 23 22 26 26 C 1.37852 * 120.68692 * 0.02562 * 25 24 23 27 27 C 1.38949 * 119.81437 * 359.97438 * 26 25 24 28 28 O 1.34453 * 124.91996 * 270.02726 * 20 19 17 29 29 H 1.08998 * 109.46840 * 307.37359 * 1 2 3 30 30 H 1.09000 * 109.46869 * 67.36690 * 1 2 3 31 31 H 1.08992 * 109.47752 * 187.37071 * 1 2 3 32 32 H 1.09002 * 109.46804 * 86.77129 * 7 6 4 33 33 H 1.09002 * 109.46791 * 206.76587 * 7 6 4 34 34 H 1.08995 * 109.47043 * 326.76439 * 7 6 4 35 35 H 1.08997 * 109.47717 * 210.00018 * 8 6 4 36 36 H 1.08998 * 109.47202 * 330.00460 * 8 6 4 37 37 H 0.97001 * 119.99903 * 179.97438 * 12 11 9 38 38 H 1.09004 * 109.47058 * 188.90867 * 18 17 2 39 39 H 1.08994 * 109.46760 * 308.90882 * 18 17 2 40 40 H 1.09000 * 109.46731 * 68.91124 * 18 17 2 41 41 H 1.09001 * 109.46892 * 49.99506 * 19 17 2 42 42 H 1.08997 * 109.46853 * 290.00292 * 19 17 2 43 43 H 1.07996 * 126.90424 * 0.06328 * 21 20 19 44 44 H 1.08004 * 120.14009 * 359.97438 * 23 22 21 45 45 H 1.07999 * 119.78876 * 180.02562 * 24 23 22 46 46 H 1.08001 * 119.65828 * 180.29021 * 25 24 23 47 47 H 1.07987 * 120.09080 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 8 2.3113 -1.8896 -1.1783 6 7 2.1716 -0.0357 -2.3886 7 6 1.9419 1.4108 -2.4258 8 6 2.5527 -0.7483 -3.6105 9 6 1.3121 -1.2181 -4.3257 10 1 0.3373 -1.0066 -3.9116 11 6 1.4216 -1.9180 -5.5085 12 7 2.6086 -2.1752 -6.0130 13 14 -0.1161 -2.4997 -6.3953 14 1 -0.9571 -1.3279 -6.7484 15 1 0.2702 -3.2234 -7.6332 16 1 -0.8838 -3.4110 -5.5090 17 7 2.0196 -0.6925 1.1994 18 6 3.4876 -0.6780 1.2534 19 6 1.4423 -0.1080 2.4173 20 6 1.7664 -0.9861 3.5984 21 6 2.8579 -0.8667 4.3665 22 6 2.7594 -1.9201 5.3838 23 6 3.5585 -2.3194 6.4542 24 6 3.1700 -3.3735 7.2338 25 6 1.9864 -4.0463 6.9665 26 6 1.1834 -3.6656 5.9127 27 6 1.5597 -2.5971 5.1081 28 8 1.0027 -2.0035 4.0335 29 1 -0.3633 0.6238 0.8167 30 1 -0.3633 0.3955 -0.9485 31 1 -0.3634 -1.0191 0.1318 32 1 2.8630 1.9318 -2.1645 33 1 1.6308 1.7036 -3.4286 34 1 1.1610 1.6731 -1.7120 35 1 3.1156 -0.0790 -4.2611 36 1 3.1706 -1.6082 -3.3519 37 1 2.6857 -2.6679 -6.8450 38 1 3.8280 -1.3279 2.0595 39 1 3.8895 -1.0345 0.3050 40 1 3.8344 0.3392 1.4357 41 1 0.3606 -0.0326 2.3066 42 1 1.8613 0.8854 2.5774 43 1 3.6502 -0.1408 4.2590 44 1 4.4808 -1.7990 6.6661 45 1 3.7879 -3.6836 8.0635 46 1 1.6891 -4.8742 7.5930 47 1 0.2639 -4.1959 5.7135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175191725.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:23 Heat of formation + Delta-G solvation = 15.446134 kcal Electronic energy + Delta-G solvation = -27979.390923 eV Core-core repulsion = 24129.488946 eV Total energy + Delta-G solvation = -3849.901977 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.58444 -39.63636 -38.10568 -37.00996 -34.76159 -33.17906 -32.61750 -31.36398 -30.60576 -30.00861 -27.96270 -27.13808 -25.84620 -24.66419 -23.66769 -22.99197 -22.01377 -21.44361 -20.69986 -18.35086 -17.51168 -17.06271 -16.79980 -16.51320 -16.33802 -15.88148 -15.32142 -15.09619 -14.95015 -14.38035 -14.29689 -14.07146 -13.88608 -13.63427 -13.29760 -13.09233 -12.77310 -12.54063 -12.43685 -12.29238 -12.17798 -12.11257 -11.94044 -11.82501 -11.42473 -11.37086 -11.27211 -11.13236 -11.02806 -10.89410 -10.55395 -10.26666 -10.15412 -9.63794 -8.88419 -8.79251 -8.43623 -8.42025 -8.18279 -7.62659 -6.03873 -4.08922 0.71638 1.18984 2.13119 2.56063 3.31982 3.36475 3.37033 3.42458 3.53438 3.67182 4.13852 4.22915 4.44895 4.48408 4.72172 4.83514 4.92638 4.94934 4.99910 5.05629 5.17315 5.21672 5.23356 5.25934 5.30828 5.49227 5.52246 5.58094 5.61228 5.67834 5.74593 5.83465 5.87831 6.02791 6.06275 6.13086 6.15287 6.23169 6.25593 6.32699 6.48438 6.82666 6.92138 7.09273 7.10907 7.45224 7.54916 7.92695 8.23506 8.41886 8.90646 9.12151 9.56311 11.04123 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019841 B = 0.002421 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.876689 B =11564.788482 C =12007.325975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 H 0.059 0.941 4 C 0.512 3.488 5 O -0.519 6.519 6 N -0.605 5.605 7 C 0.082 3.918 8 C 0.246 3.754 9 C -0.527 4.527 10 H 0.057 0.943 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.277 1.277 15 H -0.286 1.286 16 H -0.276 1.276 17 N -0.515 5.515 18 C 0.020 3.980 19 C 0.119 3.881 20 C 0.062 3.938 21 C -0.209 4.209 22 C -0.128 4.128 23 C -0.073 4.073 24 C -0.139 4.139 25 C -0.098 4.098 26 C -0.105 4.105 27 C 0.054 3.946 28 O -0.182 6.182 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.032 0.968 36 H 0.044 0.956 37 H 0.264 0.736 38 H 0.072 0.928 39 H 0.081 0.919 40 H 0.024 0.976 41 H 0.103 0.897 42 H 0.071 0.929 43 H 0.156 0.844 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.133 0.867 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.486 6.757 24.702 25.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.046 4.046 3 H 0.077 0.923 4 C 0.296 3.704 5 O -0.394 6.394 6 N -0.338 5.338 7 C -0.063 4.063 8 C 0.127 3.873 9 C -0.566 4.566 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.201 1.201 17 N -0.240 5.240 18 C -0.128 4.128 19 C -0.008 4.008 20 C 0.014 3.986 21 C -0.229 4.229 22 C -0.129 4.129 23 C -0.091 4.091 24 C -0.157 4.157 25 C -0.116 4.116 26 C -0.124 4.124 27 C 0.006 3.994 28 O -0.083 6.083 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.050 0.950 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.043 0.957 41 H 0.121 0.879 42 H 0.089 0.911 43 H 0.173 0.827 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.151 0.849 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.637 5.461 24.366 24.979 hybrid contribution -0.387 0.589 -0.561 0.901 sum -1.024 6.050 23.805 24.583 Atomic orbital electron populations 1.21850 0.92181 1.03815 1.02431 1.21706 0.97304 0.95775 0.89776 0.92291 1.19946 0.79110 0.87514 0.83785 1.90685 1.48949 1.15473 1.84324 1.48165 1.67792 1.07593 1.10261 1.21676 0.99464 0.82030 1.03094 1.19281 0.96193 0.92584 0.79226 1.21395 0.92909 1.35793 1.06512 0.92520 1.24937 0.96244 0.95707 0.97209 1.69923 1.22390 1.40424 1.20622 0.86562 0.83086 0.78931 0.78873 1.20253 1.21176 1.20138 1.61611 1.08340 1.54481 0.99580 1.22535 0.86405 0.99500 1.04368 1.20728 1.02585 0.92352 0.85121 1.22111 0.90934 0.89272 0.96329 1.22211 1.00352 1.02593 0.97719 1.19944 0.96443 0.98057 0.98423 1.20274 0.98807 0.96753 0.93300 1.20754 0.97458 0.96808 1.00652 1.20906 0.94366 0.99819 0.96555 1.19976 1.01763 0.95507 0.95115 1.19659 0.93541 0.96837 0.89367 1.83999 1.45817 1.39597 1.38894 0.91950 0.90925 0.90589 0.93956 0.90565 0.92542 0.95049 0.93780 0.92654 0.90959 0.90022 0.95739 0.87915 0.91138 0.82685 0.85678 0.85506 0.84908 0.85048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.27 37.16 0.31 -1.63 16 2 C 0.07 0.99 1.64 -68.86 -0.11 0.88 16 3 H 0.06 0.74 6.72 -51.93 -0.35 0.39 16 4 C 0.51 10.65 5.78 -10.99 -0.06 10.58 16 5 O -0.52 -13.33 15.17 5.56 0.08 -13.25 16 6 N -0.60 -12.72 2.86 -182.95 -0.52 -13.24 16 7 C 0.08 1.26 9.87 59.85 0.59 1.85 16 8 C 0.25 6.45 5.19 -5.19 -0.03 6.42 16 9 C -0.53 -14.94 9.39 -34.44 -0.32 -15.26 16 10 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 11 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 13 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 14 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 N -0.52 -7.66 4.32 -237.73 -1.03 -8.68 16 18 C 0.02 0.28 8.88 60.07 0.53 0.81 16 19 C 0.12 1.35 5.19 -4.97 -0.03 1.33 16 20 C 0.06 0.79 6.16 -35.80 -0.22 0.57 16 21 C -0.21 -2.41 9.66 -37.62 -0.36 -2.77 16 22 C -0.13 -1.56 6.40 -105.16 -0.67 -2.23 16 23 C -0.07 -0.72 10.05 -39.69 -0.40 -1.12 16 24 C -0.14 -1.18 9.98 -39.94 -0.40 -1.58 16 25 C -0.10 -0.85 10.01 -39.54 -0.40 -1.25 16 26 C -0.11 -1.12 10.07 -39.46 -0.40 -1.52 16 27 C 0.05 0.71 7.42 -38.47 -0.29 0.42 16 28 O -0.18 -2.63 10.58 3.91 0.04 -2.59 16 29 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 30 H 0.07 0.98 7.38 -51.93 -0.38 0.60 16 31 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 32 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 1.21 8.05 -51.93 -0.42 0.79 16 34 H 0.06 0.71 5.61 -51.93 -0.29 0.42 16 35 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.04 1.31 7.36 -51.93 -0.38 0.93 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 38 H 0.07 1.01 6.60 -51.93 -0.34 0.66 16 39 H 0.08 1.42 6.28 -51.93 -0.33 1.09 16 40 H 0.02 0.28 8.08 -51.93 -0.42 -0.14 16 41 H 0.10 1.07 5.83 -51.93 -0.30 0.76 16 42 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 43 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 44 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 45 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 46 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 47 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 383.78 15.07 5.78 5.78 Total: -1.00 -35.20 383.78 -9.17 -44.38 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -6.90 Total: -0.49 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: -2.35 Total: -2.84 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.81 Total: -47.91 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: 0.13 Total: -15.84 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.20 -9.17 -44.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175191725.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.824 kcal (2) G-P(sol) polarization free energy of solvation -35.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds