Wall clock time and date at job start Tue Mar 31 2020 16:20:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47525 * 2 1 4 4 C 1.50704 * 109.47202 * 239.99367 * 2 1 3 5 5 O 1.21275 * 120.00116 * 265.55079 * 4 2 1 6 6 N 1.34772 * 119.99803 * 85.55019 * 4 2 1 7 7 C 1.46510 * 119.99971 * 5.08338 * 6 4 2 8 8 C 1.46500 * 120.00311 * 185.07965 * 6 4 2 9 9 C 1.50703 * 109.46758 * 89.99987 * 8 6 4 10 10 H 1.08002 * 120.00187 * 0.02562 * 9 8 6 11 11 C 1.37877 * 119.99948 * 180.02562 * 9 8 6 12 12 N 1.31514 * 119.99868 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00100 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47277 * 59.99835 * 13 11 9 15 15 H 1.48501 * 109.47355 * 180.02562 * 13 11 9 16 16 H 1.48500 * 109.46981 * 299.99926 * 13 11 9 17 17 N 1.46899 * 109.47160 * 119.99840 * 2 1 3 18 18 C 1.46902 * 111.00378 * 181.65029 * 17 2 1 19 19 C 1.46905 * 111.00137 * 305.60575 * 17 2 1 20 20 C 1.50697 * 109.47620 * 169.99934 * 19 17 2 21 21 C 1.33995 * 124.92466 * 89.97902 * 20 19 17 22 22 C 1.46780 * 106.18491 * 180.02562 * 21 20 19 23 23 C 1.39410 * 134.36844 * 180.02562 * 22 21 20 24 24 C 1.36739 * 119.71401 * 180.02562 * 23 22 21 25 25 C 1.38742 * 120.41931 * 359.96331 * 24 23 22 26 26 C 1.37852 * 120.68692 * 0.02562 * 25 24 23 27 27 C 1.38949 * 119.81437 * 359.97438 * 26 25 24 28 28 O 1.34453 * 124.91996 * 270.02726 * 20 19 17 29 29 H 1.08998 * 109.46840 * 307.37359 * 1 2 3 30 30 H 1.09000 * 109.46869 * 67.36690 * 1 2 3 31 31 H 1.08992 * 109.47752 * 187.37071 * 1 2 3 32 32 H 1.09002 * 109.46804 * 86.77129 * 7 6 4 33 33 H 1.09002 * 109.46791 * 206.76587 * 7 6 4 34 34 H 1.08995 * 109.47043 * 326.76439 * 7 6 4 35 35 H 1.08997 * 109.47717 * 210.00018 * 8 6 4 36 36 H 1.08998 * 109.47202 * 330.00460 * 8 6 4 37 37 H 0.97001 * 119.99903 * 179.97438 * 12 11 9 38 38 H 1.09004 * 109.47058 * 188.90867 * 18 17 2 39 39 H 1.08994 * 109.46760 * 308.90882 * 18 17 2 40 40 H 1.09000 * 109.46731 * 68.91124 * 18 17 2 41 41 H 1.09001 * 109.46892 * 49.99506 * 19 17 2 42 42 H 1.08997 * 109.46853 * 290.00292 * 19 17 2 43 43 H 1.07996 * 126.90424 * 0.06328 * 21 20 19 44 44 H 1.08004 * 120.14009 * 359.97438 * 23 22 21 45 45 H 1.07999 * 119.78876 * 180.02562 * 24 23 22 46 46 H 1.08001 * 119.65828 * 180.29021 * 25 24 23 47 47 H 1.07987 * 120.09080 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7106 -1.2304 5 8 2.3113 -1.8896 -1.1783 6 7 2.1716 -0.0357 -2.3886 7 6 1.9419 1.4108 -2.4258 8 6 2.5527 -0.7483 -3.6105 9 6 1.3121 -1.2181 -4.3257 10 1 0.3373 -1.0066 -3.9116 11 6 1.4216 -1.9180 -5.5085 12 7 2.6086 -2.1752 -6.0130 13 14 -0.1161 -2.4997 -6.3953 14 1 -0.9571 -1.3279 -6.7484 15 1 0.2702 -3.2234 -7.6332 16 1 -0.8838 -3.4110 -5.5090 17 7 2.0196 -0.6925 1.1994 18 6 3.4876 -0.6780 1.2534 19 6 1.4423 -0.1080 2.4173 20 6 1.7664 -0.9861 3.5984 21 6 2.8579 -0.8667 4.3665 22 6 2.7594 -1.9201 5.3838 23 6 3.5585 -2.3194 6.4542 24 6 3.1700 -3.3735 7.2338 25 6 1.9864 -4.0463 6.9665 26 6 1.1834 -3.6656 5.9127 27 6 1.5597 -2.5971 5.1081 28 8 1.0027 -2.0035 4.0335 29 1 -0.3633 0.6238 0.8167 30 1 -0.3633 0.3955 -0.9485 31 1 -0.3634 -1.0191 0.1318 32 1 2.8630 1.9318 -2.1645 33 1 1.6308 1.7036 -3.4286 34 1 1.1610 1.6731 -1.7120 35 1 3.1156 -0.0790 -4.2611 36 1 3.1706 -1.6082 -3.3519 37 1 2.6857 -2.6679 -6.8450 38 1 3.8280 -1.3279 2.0595 39 1 3.8895 -1.0345 0.3050 40 1 3.8344 0.3392 1.4357 41 1 0.3606 -0.0326 2.3066 42 1 1.8613 0.8854 2.5774 43 1 3.6502 -0.1408 4.2590 44 1 4.4808 -1.7990 6.6661 45 1 3.7879 -3.6836 8.0635 46 1 1.6891 -4.8742 7.5930 47 1 0.2639 -4.1959 5.7135 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175191725.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:22 Heat of formation + Delta-G solvation = -7.864225 kcal Electronic energy + Delta-G solvation = -27980.401736 eV Core-core repulsion = 24129.488946 eV Total energy + Delta-G solvation = -3850.912790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.43291 -41.10173 -38.92352 -38.22264 -36.53292 -34.78976 -33.98563 -32.48437 -31.36949 -30.92555 -29.80683 -28.13324 -27.33192 -25.91510 -25.21796 -23.91680 -23.15495 -22.42600 -21.67354 -19.83736 -18.67891 -18.32629 -18.23111 -17.89001 -17.35448 -17.08640 -16.60749 -16.42588 -16.17397 -15.92319 -15.46958 -15.14331 -14.93315 -14.65235 -14.46778 -14.07099 -14.02852 -13.92846 -13.61178 -13.49362 -13.39199 -13.23044 -13.20580 -13.08091 -12.83135 -12.79078 -12.59343 -12.50338 -12.41866 -12.25430 -12.18028 -11.80824 -11.72313 -11.08661 -10.64895 -10.49696 -9.58879 -9.44316 -9.35109 -9.07022 -8.22825 -6.37940 -0.06173 0.41151 1.27739 1.35604 1.40456 1.47380 1.75190 1.83836 2.25915 2.41457 2.78173 2.95925 3.06582 3.39533 3.62011 3.72926 4.01528 4.04005 4.06048 4.10248 4.17842 4.20905 4.33582 4.41128 4.43269 4.46784 4.54190 4.57256 4.69427 4.70867 4.76203 4.81109 4.93962 4.95437 4.97228 5.00845 5.22353 5.23438 5.26742 5.35540 5.48986 5.51625 5.55522 5.75179 5.79753 5.88991 5.95753 6.05746 6.24907 6.70279 6.80587 7.28372 7.52131 8.84036 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.019841 B = 0.002421 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1410.876689 B =11564.788482 C =12007.325975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.081 3.919 3 H 0.099 0.901 4 C 0.502 3.498 5 O -0.583 6.583 6 N -0.612 5.612 7 C 0.075 3.925 8 C 0.261 3.739 9 C -0.542 4.542 10 H 0.055 0.945 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.257 1.257 15 H -0.279 1.279 16 H -0.279 1.279 17 N -0.545 5.545 18 C 0.028 3.972 19 C 0.125 3.875 20 C 0.037 3.963 21 C -0.202 4.202 22 C -0.153 4.153 23 C -0.082 4.082 24 C -0.137 4.137 25 C -0.092 4.092 26 C -0.126 4.126 27 C 0.019 3.981 28 O -0.210 6.210 29 H 0.108 0.892 30 H 0.072 0.928 31 H 0.046 0.954 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.094 0.906 35 H 0.023 0.977 36 H -0.006 1.006 37 H 0.267 0.733 38 H 0.068 0.932 39 H 0.040 0.960 40 H 0.059 0.941 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.178 0.822 44 H 0.147 0.853 45 H 0.160 0.840 46 H 0.165 0.835 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 8.720 26.926 28.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.030 4.030 3 H 0.116 0.884 4 C 0.290 3.710 5 O -0.463 6.463 6 N -0.344 5.344 7 C -0.067 4.067 8 C 0.139 3.861 9 C -0.581 4.581 10 H 0.073 0.927 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.791 3.209 14 H -0.181 1.181 15 H -0.204 1.204 16 H -0.205 1.205 17 N -0.271 5.271 18 C -0.120 4.120 19 C -0.001 4.001 20 C -0.011 4.011 21 C -0.222 4.222 22 C -0.154 4.154 23 C -0.099 4.099 24 C -0.155 4.155 25 C -0.109 4.109 26 C -0.145 4.145 27 C -0.028 4.028 28 O -0.113 6.113 29 H 0.126 0.874 30 H 0.090 0.910 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.112 0.888 35 H 0.041 0.959 36 H 0.012 0.988 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.077 0.923 41 H 0.130 0.870 42 H 0.125 0.875 43 H 0.196 0.804 44 H 0.165 0.835 45 H 0.177 0.823 46 H 0.182 0.818 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.568 7.490 26.611 27.689 hybrid contribution -0.018 -0.088 -1.127 1.131 sum -1.585 7.402 25.483 26.584 Atomic orbital electron populations 1.21885 0.90696 1.03117 1.04252 1.21604 0.98115 0.96412 0.86887 0.88391 1.21091 0.77617 0.87090 0.85194 1.90645 1.51533 1.18585 1.85503 1.48181 1.67487 1.09887 1.08837 1.21999 1.02196 0.78430 1.04066 1.18721 0.94898 0.91275 0.81190 1.21684 0.93333 1.36111 1.06927 0.92659 1.25885 0.99601 0.95687 0.98128 1.70051 1.24657 1.41081 1.21127 0.85474 0.79045 0.78865 0.77484 1.18128 1.20412 1.20472 1.61440 1.08609 1.56288 1.00804 1.22380 0.86478 1.01189 1.01905 1.20851 1.03086 0.93269 0.82919 1.22458 0.91607 0.89699 0.97323 1.22535 1.00244 1.02467 0.96966 1.20310 0.96798 0.98655 0.99612 1.20651 0.99316 0.97284 0.92693 1.21212 0.97485 0.95848 1.00924 1.21363 0.93826 1.00060 0.95684 1.20337 1.02837 0.95490 0.95811 1.20181 0.94605 0.98116 0.89878 1.83944 1.46982 1.40548 1.39776 0.87383 0.90957 0.93433 0.91171 0.91239 0.88754 0.95854 0.98826 0.92426 0.91297 0.94134 0.92312 0.87043 0.87504 0.80441 0.83546 0.82275 0.81762 0.84305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 8.27 71.98 0.60 -2.89 16 2 C 0.08 2.30 1.64 44.17 0.07 2.37 16 3 H 0.10 2.03 6.72 -2.39 -0.02 2.02 16 4 C 0.50 21.36 5.78 87.66 0.51 21.87 16 5 O -0.58 -31.89 15.17 -3.02 -0.05 -31.94 16 6 N -0.61 -26.09 2.86 -851.12 -2.43 -28.53 16 7 C 0.08 2.16 9.87 127.77 1.26 3.42 16 8 C 0.26 14.34 5.19 85.63 0.44 14.79 16 9 C -0.54 -31.61 9.39 25.60 0.24 -31.37 16 10 H 0.06 3.16 7.81 -2.91 -0.02 3.14 16 11 C 0.01 0.34 5.46 84.65 0.46 0.81 16 12 N -0.93 -57.22 13.29 21.45 0.28 -56.94 16 13 Si 0.97 45.47 29.54 68.60 2.03 47.49 16 14 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 15 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 16 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 17 N -0.55 -15.71 4.32 -906.03 -3.91 -19.62 16 18 C 0.03 0.79 8.88 127.69 1.13 1.93 16 19 C 0.12 2.54 5.19 85.56 0.44 2.99 16 20 C 0.04 0.91 6.16 24.72 0.15 1.07 16 21 C -0.20 -4.45 9.66 23.54 0.23 -4.22 16 22 C -0.15 -3.64 6.40 -20.21 -0.13 -3.77 16 23 C -0.08 -1.47 10.05 22.20 0.22 -1.24 16 24 C -0.14 -1.99 9.98 22.04 0.22 -1.77 16 25 C -0.09 -1.41 10.01 22.30 0.22 -1.18 16 26 C -0.13 -2.68 10.07 22.35 0.23 -2.45 16 27 C 0.02 0.52 7.42 22.99 0.17 0.69 16 28 O -0.21 -6.26 10.58 -8.93 -0.09 -6.35 16 29 H 0.11 1.67 6.56 -2.39 -0.02 1.65 16 30 H 0.07 1.78 7.38 -2.39 -0.02 1.76 16 31 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 2.11 8.05 -2.39 -0.02 2.09 16 34 H 0.09 2.00 5.61 -2.39 -0.01 1.99 16 35 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 36 H -0.01 -0.41 7.36 -2.39 -0.02 -0.43 16 37 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 38 H 0.07 1.93 6.60 -2.38 -0.02 1.92 16 39 H 0.04 1.46 6.28 -2.39 -0.02 1.45 16 40 H 0.06 1.20 8.08 -2.39 -0.02 1.18 16 41 H 0.11 2.02 5.83 -2.39 -0.01 2.01 16 42 H 0.11 1.39 8.07 -2.39 -0.02 1.37 16 43 H 0.18 2.84 8.06 -2.91 -0.02 2.82 16 44 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 45 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 46 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 47 H 0.14 2.53 8.06 -2.92 -0.02 2.50 16 Total: -1.00 -84.20 383.78 3.27 -80.94 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.97 Total: 13.92 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 6.47 Total: 1.02 kcal Atomic # 7 Polarization: -99.02 SS G_CDS: -6.06 Total: -105.08 kcal Atomic # 8 Polarization: -38.15 SS G_CDS: -0.14 Total: -38.29 kcal Atomic # 14 Polarization: 45.47 SS G_CDS: 2.03 Total: 47.49 kcal Total: -84.20 3.27 -80.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175191725.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.074 kcal (2) G-P(sol) polarization free energy of solvation -84.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds