Wall clock time and date at job start Tue Mar 31 2020 15:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00151 * 2 1 3 5 5 H 1.07999 * 120.00196 * 119.99595 * 4 2 1 6 6 C 1.37879 * 119.99394 * 299.99727 * 4 2 1 7 7 N 1.31514 * 120.00338 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99424 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47474 * 90.00322 * 8 6 4 10 10 H 1.48510 * 109.47116 * 210.00055 * 8 6 4 11 11 H 1.48498 * 109.47278 * 329.99887 * 8 6 4 12 12 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 13 13 C 1.34784 * 120.00075 * 85.00024 * 12 2 1 14 14 O 1.21280 * 119.99396 * 0.02562 * 13 12 2 15 15 C 1.50699 * 120.00292 * 180.02562 * 13 12 2 16 16 F 1.39900 * 110.63992 * 56.69070 * 15 13 12 17 17 C 1.55160 * 110.71712 * 180.02562 * 15 13 12 18 18 C 1.54909 * 101.57868 * 153.86754 * 17 15 13 19 19 N 1.47429 * 104.83250 * 322.98479 * 18 17 15 20 20 C 1.34772 * 125.64950 * 204.09322 * 19 18 17 21 21 O 1.21509 * 120.00148 * 180.02562 * 20 19 18 22 22 O 1.34643 * 119.99950 * 0.04476 * 20 19 18 23 23 C 1.45200 * 116.99990 * 180.02562 * 22 20 19 24 24 C 1.52998 * 109.47061 * 59.99637 * 23 22 20 25 25 C 1.52997 * 109.47306 * 180.02562 * 23 22 20 26 26 C 1.53000 * 109.46963 * 299.99932 * 23 22 20 27 27 C 1.47020 * 108.69961 * 24.13539 * 19 18 17 28 28 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 29 29 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 30 30 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 31 31 H 0.96996 * 119.99730 * 179.97438 * 7 6 4 32 32 H 0.96996 * 120.00792 * 265.00493 * 12 2 1 33 33 H 1.09003 * 111.00126 * 271.93492 * 17 15 13 34 34 H 1.08994 * 111.00971 * 35.79140 * 17 15 13 35 35 H 1.08997 * 110.36683 * 204.15053 * 18 17 15 36 36 H 1.08996 * 110.46522 * 81.87306 * 18 17 15 37 37 H 1.08995 * 109.46970 * 60.00611 * 24 23 22 38 38 H 1.09006 * 109.46917 * 179.97438 * 24 23 22 39 39 H 1.08997 * 109.47678 * 299.99706 * 24 23 22 40 40 H 1.09005 * 109.47134 * 59.99702 * 25 23 22 41 41 H 1.08993 * 109.47255 * 179.97438 * 25 23 22 42 42 H 1.09003 * 109.46805 * 299.99739 * 25 23 22 43 43 H 1.09005 * 109.47096 * 59.99977 * 26 23 22 44 44 H 1.09002 * 109.47524 * 179.97438 * 26 23 22 45 45 H 1.08998 * 109.47544 * 300.00291 * 26 23 22 46 46 H 1.09004 * 109.88076 * 239.51942 * 27 19 18 47 47 H 1.09001 * 110.01573 * 118.43075 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3225 -1.1195 4.0079 9 1 3.6305 -0.5440 4.4119 10 1 1.3445 -0.9489 5.1124 11 1 2.4880 -2.5653 3.7122 12 7 2.0183 -0.6907 -1.1961 13 6 2.1471 -0.0184 -2.3572 14 8 1.8590 1.1585 -2.4115 15 6 2.6488 -0.7290 -3.5877 16 9 1.8442 -1.8352 -3.8810 17 6 2.7133 0.2434 -4.7951 18 6 3.8177 -0.4105 -5.6624 19 7 4.7998 -0.9307 -4.6937 20 6 6.1037 -1.1619 -4.9443 21 8 6.8238 -1.5940 -4.0661 22 8 6.6084 -0.9137 -6.1676 23 6 8.0207 -1.1867 -6.3658 24 6 8.2960 -2.6681 -6.1002 25 6 8.4089 -0.8453 -7.8058 26 6 8.8454 -0.3336 -5.3999 27 6 4.1209 -1.1564 -3.4093 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.7082 1.1609 3.4844 32 1 2.2490 -1.6318 -1.1526 33 1 1.7624 0.2688 -5.3274 34 1 3.0076 1.2433 -4.4764 35 1 4.2814 0.3333 -6.3103 36 1 3.4033 -1.2248 -6.2568 37 1 7.7085 -3.2758 -6.7883 38 1 9.3561 -2.8731 -6.2495 39 1 8.0196 -2.9108 -5.0742 40 1 8.2129 0.2102 -7.9945 41 1 9.4692 -1.0498 -7.9544 42 1 7.8214 -1.4528 -8.4942 43 1 8.5689 -0.5763 -4.3738 44 1 9.9056 -0.5388 -5.5483 45 1 8.6493 0.7218 -5.5890 46 1 4.5901 -0.5543 -2.6312 47 1 4.1706 -2.2118 -3.1415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175475523.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:43 Heat of formation + Delta-G solvation = -182.963046 kcal Electronic energy + Delta-G solvation = -29616.536623 eV Core-core repulsion = 25327.261754 eV Total energy + Delta-G solvation = -4289.274869 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 330.179 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -49.12027 -41.94652 -40.85947 -39.22063 -37.54228 -36.81983 -35.09073 -34.43292 -32.56382 -31.32847 -29.97492 -28.35925 -28.27334 -27.37213 -26.13951 -24.11122 -22.81176 -22.31014 -21.16868 -20.54098 -19.66498 -19.07849 -18.12427 -17.66664 -17.54606 -17.28087 -17.08122 -16.62166 -16.15169 -15.97148 -15.75434 -15.41171 -15.17255 -14.94413 -14.78847 -14.48660 -14.32038 -14.07345 -13.82444 -13.73068 -13.34448 -13.14056 -13.09303 -12.94078 -12.92332 -12.86495 -12.81853 -12.80137 -12.67867 -12.45921 -12.29648 -12.29448 -12.16085 -12.13048 -11.41238 -11.19382 -11.15210 -10.88944 -10.62283 -10.02037 -9.91575 -8.20342 -6.37517 0.80729 1.37186 1.44534 1.44877 1.55338 1.62567 2.08059 2.42341 2.67668 2.83760 2.96567 3.10460 3.39832 3.62103 3.75412 3.80350 3.84739 3.95326 4.08216 4.29897 4.44584 4.51076 4.57472 4.62664 4.66939 4.72338 4.77829 4.79209 4.85485 4.89118 4.89835 4.92919 4.99196 5.04530 5.15950 5.29263 5.34039 5.35241 5.40663 5.50350 5.62306 5.81459 6.05132 6.21580 6.65979 6.70948 7.12422 7.16033 7.36244 8.85867 Molecular weight = 330.18amu Principal moments of inertia in cm(-1) A = 0.016171 B = 0.002886 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.110263 B = 9698.010123 C =10789.369382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.269 3.731 3 H 0.008 0.992 4 C -0.549 4.549 5 H 0.072 0.928 6 C 0.018 3.982 7 N -0.915 5.915 8 Si 0.970 3.030 9 H -0.278 1.278 10 H -0.282 1.282 11 H -0.261 1.261 12 N -0.692 5.692 13 C 0.497 3.503 14 O -0.564 6.564 15 C 0.102 3.898 16 F -0.178 7.178 17 C -0.130 4.130 18 C 0.107 3.893 19 N -0.605 5.605 20 C 0.668 3.332 21 O -0.589 6.589 22 O -0.358 6.358 23 C 0.123 3.877 24 C -0.180 4.180 25 C -0.133 4.133 26 C -0.182 4.182 27 C 0.118 3.882 28 H 0.016 0.984 29 H 0.070 0.930 30 H 0.040 0.960 31 H 0.267 0.733 32 H 0.406 0.594 33 H 0.124 0.876 34 H 0.100 0.900 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.103 0.897 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.080 0.920 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.913 -5.638 -22.250 25.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.167 3.833 3 H 0.026 0.974 4 C -0.587 4.587 5 H 0.090 0.910 6 C -0.183 4.183 7 N -0.553 5.553 8 Si 0.794 3.206 9 H -0.204 1.204 10 H -0.208 1.208 11 H -0.186 1.186 12 N -0.339 5.339 13 C 0.279 3.721 14 O -0.443 6.443 15 C 0.080 3.920 16 F -0.158 7.158 17 C -0.168 4.168 18 C -0.014 4.014 19 N -0.347 5.347 20 C 0.423 3.577 21 O -0.480 6.480 22 O -0.273 6.273 23 C 0.087 3.913 24 C -0.237 4.237 25 C -0.190 4.190 26 C -0.240 4.240 27 C -0.005 4.005 28 H 0.035 0.965 29 H 0.088 0.912 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.241 0.759 33 H 0.143 0.857 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.121 0.879 42 H 0.091 0.909 43 H 0.076 0.924 44 H 0.112 0.888 45 H 0.080 0.920 46 H 0.098 0.902 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.980 -4.874 -21.935 25.464 hybrid contribution 0.033 -0.637 1.421 1.557 sum 12.013 -5.511 -20.514 24.404 Atomic orbital electron populations 1.21911 0.97872 0.99666 0.99956 1.18474 0.91424 0.92140 0.81302 0.97441 1.21517 1.32782 1.13685 0.90763 0.90961 1.25741 0.94791 0.95568 1.02165 1.70029 1.36723 1.23797 1.24721 0.85378 0.77816 0.79188 0.78176 1.20408 1.20792 1.18558 1.46392 1.63543 1.14333 1.09673 1.20698 0.78853 0.87451 0.85050 1.90687 1.51562 1.16941 1.85131 1.21913 0.89227 0.85360 0.95518 1.92940 1.74650 1.53984 1.94231 1.23327 1.02112 0.98519 0.92826 1.22623 0.87729 0.99794 0.91239 1.47018 1.06106 1.67826 1.13750 1.17508 0.81315 0.76990 0.81852 1.90925 1.58314 1.51327 1.47389 1.86313 1.30243 1.80616 1.30078 1.22497 0.74421 0.96041 0.98314 1.22479 1.03965 0.94258 1.03040 1.21876 1.03310 1.03201 0.90632 1.22500 1.01480 0.99780 1.00203 1.22239 0.88714 1.03776 0.85787 0.96457 0.91164 0.94108 0.92425 0.75929 0.85732 0.88182 0.87190 0.88417 0.91624 0.88914 0.92329 0.91117 0.87865 0.90861 0.92449 0.88848 0.91958 0.90183 0.88112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.73 9.26 71.98 0.67 -6.07 16 2 C 0.27 13.71 2.56 44.25 0.11 13.82 16 3 H 0.01 0.46 7.58 -2.39 -0.02 0.44 16 4 C -0.55 -28.84 8.73 25.60 0.22 -28.62 16 5 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.02 0.95 5.30 84.66 0.45 1.40 16 7 N -0.91 -51.76 11.32 21.45 0.24 -51.52 16 8 Si 0.97 41.98 29.54 68.60 2.03 44.01 16 9 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 11 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 12 N -0.69 -28.39 5.07 -446.09 -2.26 -30.65 16 13 C 0.50 19.01 6.73 87.66 0.59 19.60 16 14 O -0.56 -25.50 15.37 -3.03 -0.05 -25.55 16 15 C 0.10 2.87 1.42 -10.35 -0.01 2.86 16 16 F -0.18 -4.86 16.96 44.97 0.76 -4.09 16 17 C -0.13 -2.87 5.99 31.99 0.19 -2.68 16 18 C 0.11 1.96 6.92 86.85 0.60 2.57 16 19 N -0.61 -15.11 3.33 -942.10 -3.13 -18.24 16 20 C 0.67 18.25 7.93 129.79 1.03 19.28 16 21 O -0.59 -19.20 12.21 19.81 0.24 -18.96 16 22 O -0.36 -8.04 9.42 -55.52 -0.52 -8.56 16 23 C 0.12 2.19 1.13 -10.80 -0.01 2.18 16 24 C -0.18 -3.18 8.37 71.98 0.60 -2.57 16 25 C -0.13 -1.40 8.85 71.98 0.64 -0.76 16 26 C -0.18 -3.42 8.37 71.98 0.60 -2.82 16 27 C 0.12 3.22 6.27 86.73 0.54 3.76 16 28 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.07 3.82 6.07 -2.39 -0.01 3.81 16 30 H 0.04 1.88 8.14 -2.38 -0.02 1.86 16 31 H 0.27 14.27 8.31 -92.71 -0.77 13.50 16 32 H 0.41 14.53 8.54 -92.71 -0.79 13.74 16 33 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.10 2.50 7.40 -2.39 -0.02 2.49 16 35 H 0.11 1.64 8.04 -2.39 -0.02 1.62 16 36 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 39 H 0.06 1.42 5.88 -2.39 -0.01 1.41 16 40 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.06 1.47 5.88 -2.38 -0.01 1.46 16 44 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.08 2.47 7.81 -2.38 -0.02 2.45 16 47 H 0.10 2.60 8.11 -2.39 -0.02 2.58 16 Total: -1.00 -68.04 383.27 3.72 -64.32 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.19 Total: 27.29 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: 6.22 Total: 21.95 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -5.15 Total: -100.41 kcal Atomic # 8 Polarization: -52.74 SS G_CDS: -0.33 Total: -53.07 kcal Atomic # 9 Polarization: -4.86 SS G_CDS: 0.76 Total: -4.09 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -68.04 3.72 -64.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175475523.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.646 kcal (2) G-P(sol) polarization free energy of solvation -68.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds