Wall clock time and date at job start Tue Mar 31 2020 17:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.46781 * 2 1 4 4 C 1.46499 * 120.00247 * 269.99984 * 3 2 1 5 5 C 1.50694 * 109.47242 * 270.00396 * 4 3 2 6 6 H 1.07999 * 120.00428 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00170 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99961 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00095 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47517 * 90.00049 * 9 7 5 11 11 H 1.48502 * 109.47021 * 209.99677 * 9 7 5 12 12 H 1.48497 * 109.47220 * 329.99519 * 9 7 5 13 13 C 1.34777 * 119.99951 * 90.00609 * 3 2 1 14 14 O 1.21283 * 119.99808 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99687 * 359.97438 * 13 3 2 16 16 N 1.46905 * 109.46999 * 180.02562 * 15 13 3 17 17 C 1.46891 * 111.00146 * 180.02562 * 16 15 13 18 18 H 1.08997 * 109.47382 * 325.00387 * 17 16 15 19 19 C 1.53002 * 109.46999 * 85.00347 * 17 16 15 20 20 C 1.50704 * 109.47310 * 205.00346 * 17 16 15 21 21 C 1.33994 * 124.92605 * 140.00139 * 20 17 16 22 22 C 1.46782 * 106.18600 * 179.73297 * 21 20 17 23 23 C 1.39408 * 134.36855 * 179.97438 * 22 21 20 24 24 C 1.36738 * 119.71395 * 179.97438 * 23 22 21 25 25 C 1.38740 * 120.41924 * 359.97438 * 24 23 22 26 26 C 1.37854 * 120.68409 * 0.02562 * 25 24 23 27 27 C 1.38936 * 119.81704 * 359.97438 * 26 25 24 28 28 O 1.34449 * 124.91920 * 319.69496 * 20 17 16 29 29 H 1.09005 * 109.47479 * 59.99828 * 1 2 3 30 30 H 1.09003 * 109.46874 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47292 * 299.99330 * 1 2 3 32 32 H 1.08998 * 109.47050 * 240.00426 * 2 1 3 33 33 H 1.08996 * 109.47271 * 120.00135 * 2 1 3 34 34 H 1.09010 * 109.46941 * 30.00180 * 4 3 2 35 35 H 1.08996 * 109.47320 * 149.99730 * 4 3 2 36 36 H 0.96993 * 120.00393 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.46611 * 60.01051 * 15 13 3 38 38 H 1.08991 * 109.47656 * 300.00480 * 15 13 3 39 39 H 1.00908 * 110.99475 * 56.04964 * 16 15 13 40 40 H 1.08996 * 109.47183 * 299.99463 * 19 17 16 41 41 H 1.09001 * 109.47477 * 60.00029 * 19 17 16 42 42 H 1.09002 * 109.46887 * 179.97438 * 19 17 16 43 43 H 1.08000 * 126.90275 * 359.73242 * 21 20 17 44 44 H 1.07993 * 120.14281 * 359.97438 * 23 22 21 45 45 H 1.08000 * 119.79137 * 180.02562 * 24 23 22 46 46 H 1.08003 * 119.66248 * 180.02562 * 25 24 23 47 47 H 1.08000 * 120.08698 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6856 1.8352 -1.7038 6 1 4.3427 1.2311 -1.0959 7 6 4.1492 2.3907 -2.8774 8 7 3.3492 3.1269 -3.6175 9 14 5.9132 2.0967 -3.4171 10 1 5.9759 0.8763 -4.2608 11 1 6.3927 3.2643 -4.1994 12 1 6.7734 1.9158 -2.2202 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1603 1.1672 15 6 1.9913 1.3062 2.4723 16 7 2.3091 2.2064 3.5889 17 6 2.0759 1.5461 4.8802 18 1 1.2161 0.8812 4.7982 19 6 3.3132 0.7342 5.2686 20 6 1.8067 2.5876 5.9356 21 6 0.8903 2.4765 6.9069 22 6 0.9810 3.7095 7.6980 23 6 0.3134 4.1996 8.8194 24 6 0.6482 5.4248 9.3259 25 6 1.6475 6.1816 8.7312 26 6 2.3185 5.7133 7.6217 27 6 1.9938 4.4710 7.0912 28 8 2.4553 3.7604 6.0427 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5815 1.6878 -2.0284 35 1 2.0953 3.1411 -1.1384 36 1 3.6754 3.5180 -4.4430 37 1 2.6214 0.4187 2.5301 38 1 0.9434 1.0123 2.5299 39 1 1.7839 3.0654 3.5216 40 1 3.5079 -0.0191 4.5053 41 1 4.1731 1.3991 5.3506 42 1 3.1403 0.2446 6.2270 43 1 0.2197 1.6465 7.0739 44 1 -0.4648 3.6141 9.2861 45 1 0.1321 5.8055 10.1948 46 1 1.9023 7.1475 9.1416 47 1 3.0945 6.3107 7.1662 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182645115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:35 Heat of formation + Delta-G solvation = -1.896112 kcal Electronic energy + Delta-G solvation = -27500.181746 eV Core-core repulsion = 23649.527753 eV Total energy + Delta-G solvation = -3850.653993 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.65041 -39.19300 -38.18541 -36.60207 -35.21294 -33.09397 -32.75445 -31.21178 -30.61481 -30.08236 -28.72385 -27.72467 -25.82508 -23.73947 -23.01867 -22.91350 -22.23681 -21.52499 -20.74758 -18.50169 -17.53270 -17.36478 -16.46548 -16.35431 -16.29843 -15.98540 -15.46097 -15.34420 -14.62509 -14.50595 -14.21913 -14.04755 -13.77889 -13.52182 -13.37890 -13.24036 -12.85335 -12.75309 -12.51179 -12.30629 -12.17495 -12.02575 -11.96589 -11.78699 -11.58275 -11.37224 -11.18316 -11.13559 -10.89360 -10.72816 -10.50613 -10.32095 -10.10171 -9.60582 -8.91373 -8.82752 -8.46203 -8.40917 -8.36697 -7.63976 -6.01704 -4.06039 0.67448 1.15062 2.11233 2.50094 3.32058 3.38631 3.41039 3.47260 3.49665 3.63840 4.07633 4.28196 4.43576 4.48274 4.70156 4.78424 4.87223 4.94841 4.99196 5.08079 5.11991 5.20244 5.24690 5.32867 5.37218 5.41600 5.52101 5.58324 5.61893 5.63623 5.69181 5.76075 5.97114 5.99951 6.03328 6.12833 6.18815 6.19553 6.21818 6.41620 6.45538 6.75117 7.02583 7.12562 7.31137 7.46945 7.57760 7.95151 8.26515 8.44554 8.93646 9.13449 9.59020 11.06428 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016624 B = 0.002394 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.894185 B =11695.447859 C =12431.016702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.504 3.496 14 O -0.526 6.526 15 C 0.039 3.961 16 N -0.664 5.664 17 C 0.161 3.839 18 H 0.077 0.923 19 C -0.142 4.142 20 C 0.046 3.954 21 C -0.210 4.210 22 C -0.130 4.130 23 C -0.074 4.074 24 C -0.138 4.138 25 C -0.098 4.098 26 C -0.104 4.104 27 C 0.053 3.947 28 O -0.173 6.173 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.098 0.902 38 H 0.055 0.945 39 H 0.357 0.643 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.060 0.940 43 H 0.157 0.843 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.134 0.866 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.364 -4.155 24.482 26.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.726 3.274 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.290 3.710 14 O -0.402 6.402 15 C -0.093 4.093 16 N -0.298 5.298 17 C 0.051 3.949 18 H 0.095 0.905 19 C -0.200 4.200 20 C -0.003 4.003 21 C -0.230 4.230 22 C -0.131 4.131 23 C -0.092 4.092 24 C -0.156 4.156 25 C -0.116 4.116 26 C -0.122 4.122 27 C 0.005 3.995 28 O -0.073 6.073 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.049 0.951 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.116 0.884 38 H 0.073 0.927 39 H 0.177 0.823 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.079 0.921 43 H 0.175 0.825 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.152 0.848 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -7.263 -3.472 24.084 25.394 hybrid contribution -0.147 -0.298 -0.338 0.474 sum -7.410 -3.770 23.746 25.159 Atomic orbital electron populations 1.22228 0.96912 1.01357 1.02244 1.21403 0.93383 0.84348 1.02662 1.48254 1.64035 1.13221 1.07679 1.19252 0.96255 0.93610 0.78052 1.21438 0.96924 1.31777 1.06154 0.92460 1.24939 0.97847 0.94939 0.96448 1.69929 1.35694 1.33501 1.14369 0.86499 0.84750 0.77617 0.78582 1.20694 1.21115 1.19853 1.20101 0.78999 0.87139 0.84786 1.90693 1.44706 1.17918 1.86846 1.22005 0.99975 0.96787 0.90500 1.60183 1.63391 1.07159 0.99049 1.20282 0.99002 0.90192 0.85394 0.90549 1.21867 0.97283 0.99764 1.01068 1.22413 0.93300 0.86149 0.98399 1.22197 1.03664 0.99292 0.97846 1.19937 0.99239 0.95349 0.98563 1.20261 0.98876 0.95846 0.94222 1.20764 0.98920 0.94910 1.01035 1.20928 0.95822 0.99956 0.94853 1.20021 1.02425 0.92397 0.97370 1.19715 0.96210 0.94700 0.88875 1.84086 1.54075 1.26587 1.42588 0.92000 0.92184 0.93272 0.89895 0.91854 0.95072 0.93958 0.92762 0.88369 0.92737 0.82258 0.91262 0.91110 0.92064 0.82506 0.85679 0.85471 0.84834 0.84862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.17 10.24 37.15 0.38 -1.79 16 2 C 0.11 1.65 5.93 -4.04 -0.02 1.62 16 3 N -0.60 -12.50 2.46 -175.06 -0.43 -12.93 16 4 C 0.25 6.48 5.16 -5.20 -0.03 6.46 16 5 C -0.52 -14.99 9.39 -34.44 -0.32 -15.31 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.90 -26.88 13.29 55.43 0.74 -26.15 16 9 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.50 10.44 7.71 -10.98 -0.08 10.36 16 14 O -0.53 -13.48 15.78 5.55 0.09 -13.39 16 15 C 0.04 0.57 4.52 -4.97 -0.02 0.55 16 16 N -0.66 -9.80 5.91 -109.22 -0.65 -10.45 16 17 C 0.16 1.80 3.05 -68.87 -0.21 1.59 16 18 H 0.08 0.68 7.78 -51.93 -0.40 0.27 16 19 C -0.14 -1.46 9.40 37.16 0.35 -1.11 16 20 C 0.05 0.56 5.73 -35.80 -0.21 0.36 16 21 C -0.21 -2.26 10.99 -37.62 -0.41 -2.68 16 22 C -0.13 -1.51 6.40 -105.16 -0.67 -2.19 16 23 C -0.07 -0.69 10.05 -39.69 -0.40 -1.09 16 24 C -0.14 -1.13 9.98 -39.94 -0.40 -1.53 16 25 C -0.10 -0.83 10.01 -39.54 -0.40 -1.22 16 26 C -0.10 -1.11 10.07 -39.46 -0.40 -1.51 16 27 C 0.05 0.68 7.42 -38.48 -0.29 0.40 16 28 O -0.17 -2.50 10.56 3.90 0.04 -2.46 16 29 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.59 7.22 -51.93 -0.37 0.22 16 32 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 33 H 0.06 0.79 6.44 -51.93 -0.33 0.46 16 34 H 0.03 0.82 8.07 -51.92 -0.42 0.40 16 35 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 36 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 37 H 0.10 1.27 6.70 -51.93 -0.35 0.92 16 38 H 0.05 0.65 7.10 -51.93 -0.37 0.28 16 39 H 0.36 5.74 8.05 -39.29 -0.32 5.42 16 40 H 0.07 0.67 7.45 -51.93 -0.39 0.28 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 44 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 45 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 46 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 47 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 LS Contribution 393.63 15.07 5.93 5.93 Total: -1.00 -35.10 393.63 -9.63 -44.73 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: -7.11 Total: 3.02 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: -3.23 Total: -5.45 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: -0.34 Total: -49.53 kcal Atomic # 8 Polarization: -15.98 SS G_CDS: 0.13 Total: -15.85 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.10 -9.63 -44.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182645115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.832 kcal (2) G-P(sol) polarization free energy of solvation -35.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds