Wall clock time and date at job start Tue Mar 31 2020 17:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.46781 * 2 1 4 4 C 1.46499 * 120.00247 * 269.99984 * 3 2 1 5 5 C 1.50694 * 109.47242 * 270.00396 * 4 3 2 6 6 H 1.07999 * 120.00428 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00170 * 180.02562 * 5 4 3 8 8 N 1.31514 * 119.99961 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 120.00095 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47517 * 90.00049 * 9 7 5 11 11 H 1.48502 * 109.47021 * 209.99677 * 9 7 5 12 12 H 1.48497 * 109.47220 * 329.99519 * 9 7 5 13 13 C 1.34777 * 119.99951 * 90.00609 * 3 2 1 14 14 O 1.21283 * 119.99808 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99687 * 359.97438 * 13 3 2 16 16 N 1.46905 * 109.46999 * 180.02562 * 15 13 3 17 17 C 1.46891 * 111.00146 * 180.02562 * 16 15 13 18 18 H 1.08997 * 109.47382 * 325.00387 * 17 16 15 19 19 C 1.53002 * 109.46999 * 85.00347 * 17 16 15 20 20 C 1.50704 * 109.47310 * 205.00346 * 17 16 15 21 21 C 1.33994 * 124.92605 * 140.00139 * 20 17 16 22 22 C 1.46782 * 106.18600 * 179.73297 * 21 20 17 23 23 C 1.39408 * 134.36855 * 179.97438 * 22 21 20 24 24 C 1.36738 * 119.71395 * 179.97438 * 23 22 21 25 25 C 1.38740 * 120.41924 * 359.97438 * 24 23 22 26 26 C 1.37854 * 120.68409 * 0.02562 * 25 24 23 27 27 C 1.38936 * 119.81704 * 359.97438 * 26 25 24 28 28 O 1.34449 * 124.91920 * 319.69496 * 20 17 16 29 29 H 1.09005 * 109.47479 * 59.99828 * 1 2 3 30 30 H 1.09003 * 109.46874 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47292 * 299.99330 * 1 2 3 32 32 H 1.08998 * 109.47050 * 240.00426 * 2 1 3 33 33 H 1.08996 * 109.47271 * 120.00135 * 2 1 3 34 34 H 1.09010 * 109.46941 * 30.00180 * 4 3 2 35 35 H 1.08996 * 109.47320 * 149.99730 * 4 3 2 36 36 H 0.96993 * 120.00393 * 179.97438 * 8 7 5 37 37 H 1.09004 * 109.46611 * 60.01051 * 15 13 3 38 38 H 1.08991 * 109.47656 * 300.00480 * 15 13 3 39 39 H 1.00908 * 110.99475 * 56.04964 * 16 15 13 40 40 H 1.08996 * 109.47183 * 299.99463 * 19 17 16 41 41 H 1.09001 * 109.47477 * 60.00029 * 19 17 16 42 42 H 1.09002 * 109.46887 * 179.97438 * 19 17 16 43 43 H 1.08000 * 126.90275 * 359.73242 * 21 20 17 44 44 H 1.07993 * 120.14281 * 359.97438 * 23 22 21 45 45 H 1.08000 * 119.79137 * 180.02562 * 24 23 22 46 46 H 1.08003 * 119.66248 * 180.02562 * 25 24 23 47 47 H 1.08000 * 120.08698 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0720 -1.2687 5 6 3.6856 1.8352 -1.7038 6 1 4.3427 1.2311 -1.0959 7 6 4.1492 2.3907 -2.8774 8 7 3.3492 3.1269 -3.6175 9 14 5.9132 2.0967 -3.4171 10 1 5.9759 0.8763 -4.2608 11 1 6.3927 3.2643 -4.1994 12 1 6.7734 1.9158 -2.2202 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1603 1.1672 15 6 1.9913 1.3062 2.4723 16 7 2.3091 2.2064 3.5889 17 6 2.0759 1.5461 4.8802 18 1 1.2161 0.8812 4.7982 19 6 3.3132 0.7342 5.2686 20 6 1.8067 2.5876 5.9356 21 6 0.8903 2.4765 6.9069 22 6 0.9810 3.7095 7.6980 23 6 0.3134 4.1996 8.8194 24 6 0.6482 5.4248 9.3259 25 6 1.6475 6.1816 8.7312 26 6 2.3185 5.7133 7.6217 27 6 1.9938 4.4710 7.0912 28 8 2.4553 3.7604 6.0427 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 1.5815 1.6878 -2.0284 35 1 2.0953 3.1411 -1.1384 36 1 3.6754 3.5180 -4.4430 37 1 2.6214 0.4187 2.5301 38 1 0.9434 1.0123 2.5299 39 1 1.7839 3.0654 3.5216 40 1 3.5079 -0.0191 4.5053 41 1 4.1731 1.3991 5.3506 42 1 3.1403 0.2446 6.2270 43 1 0.2197 1.6465 7.0739 44 1 -0.4648 3.6141 9.2861 45 1 0.1321 5.8055 10.1948 46 1 1.9023 7.1475 9.1416 47 1 3.0945 6.3107 7.1662 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182645115.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:05:34 Heat of formation + Delta-G solvation = -24.892143 kcal Electronic energy + Delta-G solvation = -27501.178929 eV Core-core repulsion = 23649.527753 eV Total energy + Delta-G solvation = -3851.651176 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.47500 -40.75960 -38.95184 -37.66014 -36.84867 -34.92297 -33.89043 -32.25426 -31.53055 -31.34537 -29.61045 -29.31411 -27.29464 -24.97039 -24.39684 -23.80046 -23.56459 -22.37288 -21.57263 -19.99923 -18.72160 -18.37872 -18.29761 -17.53613 -17.32622 -17.19064 -16.72266 -16.52375 -16.16732 -15.69040 -15.37142 -15.04946 -14.83081 -14.63840 -14.44915 -14.39254 -14.08352 -13.93302 -13.65943 -13.41918 -13.30612 -13.20100 -13.11553 -13.00431 -12.85062 -12.67562 -12.62075 -12.47643 -12.29792 -12.15772 -11.86015 -11.83746 -11.71553 -11.10244 -10.64623 -10.57162 -9.59878 -9.54332 -9.38793 -9.13622 -8.22777 -6.37355 -0.07447 0.39583 1.31566 1.34813 1.38507 1.48755 1.72636 1.85855 2.24229 2.40701 2.76825 3.04186 3.06826 3.33034 3.69688 3.71586 4.01046 4.06182 4.11245 4.13802 4.19517 4.28649 4.32044 4.40399 4.42763 4.47236 4.53903 4.66482 4.69987 4.79494 4.87931 4.93836 4.95538 5.00408 5.06333 5.21602 5.22440 5.32065 5.34936 5.40367 5.46089 5.50186 5.58202 5.70319 5.84278 5.92553 6.06854 6.09273 6.28746 6.70994 6.83421 7.28809 7.52685 8.84227 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016624 B = 0.002394 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.894185 B =11695.447859 C =12431.016702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.098 3.902 3 N -0.604 5.604 4 C 0.263 3.737 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.005 3.995 8 N -0.930 5.930 9 Si 0.968 3.032 10 H -0.261 1.261 11 H -0.282 1.282 12 H -0.274 1.274 13 C 0.492 3.508 14 O -0.590 6.590 15 C 0.058 3.942 16 N -0.689 5.689 17 C 0.165 3.835 18 H 0.112 0.888 19 C -0.139 4.139 20 C 0.020 3.980 21 C -0.198 4.198 22 C -0.152 4.152 23 C -0.078 4.078 24 C -0.136 4.136 25 C -0.090 4.090 26 C -0.130 4.130 27 C 0.017 3.983 28 O -0.208 6.208 29 H 0.035 0.965 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.022 0.978 35 H -0.008 1.008 36 H 0.267 0.733 37 H 0.124 0.876 38 H 0.093 0.907 39 H 0.344 0.656 40 H 0.078 0.922 41 H 0.041 0.959 42 H 0.083 0.917 43 H 0.188 0.812 44 H 0.152 0.848 45 H 0.161 0.839 46 H 0.163 0.837 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.391 -6.585 27.040 29.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.141 3.859 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.193 4.193 8 N -0.569 5.569 9 Si 0.792 3.208 10 H -0.185 1.185 11 H -0.207 1.207 12 H -0.199 1.199 13 C 0.281 3.719 14 O -0.470 6.470 15 C -0.074 4.074 16 N -0.322 5.322 17 C 0.057 3.943 18 H 0.130 0.870 19 C -0.197 4.197 20 C -0.028 4.028 21 C -0.217 4.217 22 C -0.153 4.153 23 C -0.095 4.095 24 C -0.154 4.154 25 C -0.108 4.108 26 C -0.149 4.149 27 C -0.031 4.031 28 O -0.110 6.110 29 H 0.054 0.946 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.122 0.878 34 H 0.040 0.960 35 H 0.011 0.989 36 H 0.076 0.924 37 H 0.142 0.858 38 H 0.110 0.890 39 H 0.163 0.837 40 H 0.097 0.903 41 H 0.060 0.940 42 H 0.102 0.898 43 H 0.206 0.794 44 H 0.169 0.831 45 H 0.179 0.821 46 H 0.181 0.819 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.317 -5.972 26.665 28.563 hybrid contribution 0.117 0.534 -1.040 1.175 sum -8.200 -5.437 25.624 27.448 Atomic orbital electron populations 1.22159 0.94584 1.03555 1.01581 1.21777 0.95270 0.81198 1.04124 1.48285 1.64031 1.15229 1.06051 1.18665 0.95235 0.91380 0.80573 1.21712 0.97922 1.31856 1.06393 0.92930 1.25879 1.02431 0.94512 0.96522 1.70052 1.37786 1.34269 1.14837 0.85415 0.78978 0.78252 0.78166 1.18547 1.20712 1.19929 1.21286 0.77370 0.86666 0.86593 1.90657 1.47497 1.20937 1.87915 1.21925 1.02653 0.96180 0.86592 1.60155 1.64102 1.07230 1.00720 1.20440 1.00591 0.90123 0.83184 0.87044 1.21869 0.95893 0.99288 1.02623 1.22723 0.94299 0.86105 0.99656 1.22571 1.02936 0.99555 0.96643 1.20307 0.99521 0.95789 0.99636 1.20668 0.98987 0.96520 0.93373 1.21225 0.98319 0.94317 1.01552 1.21356 0.94951 1.00959 0.93533 1.20331 1.03520 0.92325 0.98703 1.20226 0.97601 0.95866 0.89366 1.84027 1.55395 1.27851 1.43700 0.94577 0.88436 0.92085 0.91050 0.87757 0.95980 0.98941 0.92448 0.85821 0.88953 0.83693 0.90278 0.93984 0.89805 0.79438 0.83071 0.82097 0.81931 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 10.24 71.98 0.74 -3.00 16 2 C 0.10 2.87 5.93 86.38 0.51 3.38 16 3 N -0.60 -25.63 2.46 -826.16 -2.03 -27.66 16 4 C 0.26 14.53 5.16 85.63 0.44 14.98 16 5 C -0.54 -31.94 9.39 25.60 0.24 -31.70 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.31 5.46 84.66 0.46 0.77 16 8 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 9 Si 0.97 46.11 29.54 68.60 2.03 48.14 16 10 H -0.26 -11.53 7.11 99.48 0.71 -10.82 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.27 -13.01 7.11 99.48 0.71 -12.30 16 13 C 0.49 20.77 7.71 87.66 0.68 21.45 16 14 O -0.59 -32.08 15.78 -3.04 -0.05 -32.12 16 15 C 0.06 1.57 4.52 85.56 0.39 1.96 16 16 N -0.69 -20.17 5.91 -499.47 -2.95 -23.13 16 17 C 0.17 3.41 3.05 44.17 0.13 3.55 16 18 H 0.11 1.51 7.78 -2.39 -0.02 1.49 16 19 C -0.14 -2.62 9.40 71.98 0.68 -1.95 16 20 C 0.02 0.48 5.73 24.72 0.14 0.62 16 21 C -0.20 -3.95 10.99 23.54 0.26 -3.69 16 22 C -0.15 -3.41 6.40 -20.21 -0.13 -3.54 16 23 C -0.08 -1.27 10.05 22.20 0.22 -1.05 16 24 C -0.14 -1.86 9.98 22.04 0.22 -1.64 16 25 C -0.09 -1.40 10.01 22.30 0.22 -1.18 16 26 C -0.13 -2.90 10.07 22.35 0.23 -2.67 16 27 C 0.02 0.45 7.42 22.99 0.17 0.62 16 28 O -0.21 -6.39 10.56 -8.97 -0.09 -6.49 16 29 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.06 1.28 7.22 -2.38 -0.02 1.26 16 32 H 0.07 2.25 8.07 -2.39 -0.02 2.23 16 33 H 0.10 2.20 6.44 -2.39 -0.02 2.18 16 34 H 0.02 1.24 8.07 -2.38 -0.02 1.22 16 35 H -0.01 -0.49 7.42 -2.39 -0.02 -0.50 16 36 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 37 H 0.12 2.75 6.70 -2.38 -0.02 2.73 16 38 H 0.09 1.84 7.10 -2.39 -0.02 1.82 16 39 H 0.34 11.53 8.05 -89.69 -0.72 10.81 16 40 H 0.08 1.31 7.45 -2.39 -0.02 1.29 16 41 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.19 2.33 8.06 -2.91 -0.02 2.30 16 44 H 0.15 1.59 8.06 -2.91 -0.02 1.57 16 45 H 0.16 1.08 8.06 -2.91 -0.02 1.06 16 46 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 47 H 0.13 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -84.20 393.63 3.04 -81.16 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.25 Total: 20.50 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 5.60 Total: -3.10 kcal Atomic # 7 Polarization: -103.39 SS G_CDS: -4.69 Total: -108.08 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -0.14 Total: -38.61 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -84.20 3.04 -81.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182645115.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.268 kcal (2) G-P(sol) polarization free energy of solvation -84.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds