Wall clock time and date at job start Tue Mar 31 2020 15:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47756 * 2 1 4 4 C 1.53002 * 109.47162 * 239.99324 * 2 1 3 5 5 C 1.50702 * 109.47352 * 175.00310 * 4 2 1 6 6 O 1.21284 * 119.99612 * 0.02562 * 5 4 2 7 7 N 1.34770 * 120.00224 * 180.02562 * 5 4 2 8 8 C 1.39233 * 120.00108 * 183.28977 * 7 5 4 9 9 C 1.39484 * 119.83506 * 322.14759 * 8 7 5 10 10 C 1.36374 * 120.17030 * 179.71416 * 9 8 7 11 11 C 1.40862 * 119.82726 * 0.56260 * 10 9 8 12 12 C 1.41154 * 120.16548 * 179.69524 * 11 10 9 13 13 H 1.07998 * 120.00376 * 158.02936 * 12 11 10 14 14 C 1.39911 * 119.99843 * 338.02801 * 12 11 10 15 15 N 1.30873 * 120.00122 * 327.60485 * 14 12 11 16 16 Si 1.86795 * 119.99884 * 147.60309 * 14 12 11 17 17 H 1.48499 * 109.47450 * 94.98926 * 16 14 12 18 18 H 1.48503 * 109.47075 * 214.98975 * 16 14 12 19 19 H 1.48506 * 109.47363 * 334.98717 * 16 14 12 20 20 C 1.40871 * 119.67683 * 359.71739 * 11 10 9 21 21 C 1.36380 * 119.82379 * 359.97438 * 20 11 10 22 22 N 1.46505 * 109.46679 * 120.00013 * 2 1 3 23 23 C 1.45758 * 117.94522 * 239.73239 * 22 2 1 24 24 C 1.53106 * 110.38534 * 160.74416 * 23 22 2 25 25 C 1.53349 * 108.52603 * 51.11841 * 24 23 22 26 26 C 1.53070 * 108.42378 * 292.30658 * 25 24 23 27 27 C 1.33358 * 117.94699 * 59.99790 * 22 2 1 28 28 O 1.21284 * 118.24482 * 2.24587 * 27 22 2 29 29 H 1.08995 * 109.47756 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46876 * 300.00452 * 1 2 3 31 31 H 1.09000 * 109.46808 * 59.99989 * 1 2 3 32 32 H 1.09005 * 109.46759 * 55.00392 * 4 2 1 33 33 H 1.08998 * 109.47609 * 295.00772 * 4 2 1 34 34 H 0.97004 * 119.99891 * 3.28708 * 7 5 4 35 35 H 1.08003 * 119.91091 * 0.02562 * 9 8 7 36 36 H 1.07997 * 120.08502 * 180.27731 * 10 9 8 37 37 H 0.96992 * 120.00114 * 179.97438 * 15 14 12 38 38 H 1.07994 * 120.09235 * 179.97438 * 20 11 10 39 39 H 1.07995 * 119.91420 * 179.97438 * 21 20 11 40 40 H 1.08994 * 109.30084 * 281.24237 * 23 22 2 41 41 H 1.08997 * 109.29876 * 40.61554 * 23 22 2 42 42 H 1.08997 * 109.80466 * 291.33088 * 24 23 22 43 43 H 1.08996 * 109.54271 * 170.75064 * 24 23 22 44 44 H 1.08996 * 109.67445 * 172.57678 * 25 24 23 45 45 H 1.08994 * 109.67787 * 52.04060 * 25 24 23 46 46 H 1.09003 * 109.40333 * 288.77476 * 26 25 24 47 47 H 1.09002 * 109.33004 * 168.98813 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5419 -0.6152 -1.3127 6 8 4.1450 -0.0213 -0.4440 7 7 4.2149 -1.1800 -2.3346 8 6 5.6065 -1.1412 -2.3579 9 6 6.2764 -0.0014 -1.9131 10 6 7.6394 0.0418 -1.9274 11 6 8.3704 -1.0640 -2.4040 12 6 9.7812 -1.0244 -2.4280 13 1 10.3470 -1.9442 -2.4446 14 6 10.4466 0.2063 -2.4303 15 7 9.9057 1.2416 -3.0206 16 14 12.1070 0.3719 -1.5907 17 1 13.1884 0.1866 -2.5914 18 1 12.2216 1.7217 -0.9822 19 1 12.2311 -0.6609 -0.5309 20 6 7.6867 -2.2093 -2.8570 21 6 6.3235 -2.2401 -2.8307 22 7 2.0182 -0.6907 1.1962 23 6 2.8578 0.0586 2.1227 24 6 2.8767 -0.6213 3.4944 25 6 3.2230 -2.1024 3.2994 26 6 2.0606 -2.7788 2.5684 27 6 1.6711 -1.9670 1.3665 28 8 1.0057 -2.5007 0.5043 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -0.2619 -2.1370 33 1 1.7516 -1.7716 -1.2055 34 1 3.7297 -1.6136 -3.0540 35 1 5.7143 0.8471 -1.5518 36 1 8.1567 0.9232 -1.5786 37 1 10.3668 2.0949 -3.0218 38 1 8.2405 -3.0606 -3.2241 39 1 5.7979 -3.1173 -3.1780 40 1 3.8725 0.1103 1.7282 41 1 2.4639 1.0694 2.2289 42 1 1.8968 -0.5335 3.9636 43 1 3.6303 -0.1494 4.1248 44 1 3.3710 -2.5755 4.2701 45 1 4.1320 -2.1915 2.7047 46 1 1.2075 -2.8603 3.2421 47 1 2.3662 -3.7751 2.2488 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188983267.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:53 Heat of formation + Delta-G solvation = -57.218342 kcal Electronic energy + Delta-G solvation = -28779.802715 eV Core-core repulsion = 24926.749770 eV Total energy + Delta-G solvation = -3853.052945 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.88446 -39.30780 -37.25299 -36.39601 -35.29561 -34.32209 -32.98587 -31.36951 -29.59932 -29.49095 -29.24919 -27.75187 -24.84019 -24.46200 -23.30836 -21.64096 -21.25993 -20.71291 -19.49615 -18.31441 -17.36799 -17.01924 -16.91134 -16.13712 -15.74631 -15.64761 -15.20327 -14.71743 -14.34336 -14.28254 -14.00449 -13.88273 -13.75397 -13.27376 -13.03176 -12.99142 -12.68352 -12.23832 -12.11818 -12.08325 -11.99951 -11.74978 -11.66725 -11.40560 -11.22757 -11.13345 -11.07759 -11.04930 -11.00154 -10.80833 -10.64883 -10.02785 -9.61807 -9.34624 -9.27607 -8.91211 -8.81117 -8.56777 -7.52014 -7.13628 -6.83596 -4.26445 2.63505 2.69598 2.99374 3.05495 3.05879 3.10184 3.14907 3.42870 3.86433 3.90019 4.50963 4.53014 4.66963 4.69543 4.72456 4.91523 5.05489 5.22970 5.30245 5.33688 5.47341 5.50038 5.56261 5.62835 5.69817 5.72001 5.75501 5.78697 5.83971 5.96836 6.04049 6.18003 6.18413 6.24168 6.41277 6.62963 6.83613 6.99364 7.07288 7.12184 7.31407 7.58099 7.60574 7.70918 7.97417 8.04536 8.22998 8.24646 8.35750 8.59135 8.84987 8.85608 9.04639 10.04053 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016168 B = 0.003046 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.409066 B = 9189.860145 C = 9796.825371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.161 3.839 3 H 0.091 0.909 4 C -0.165 4.165 5 C 0.501 3.499 6 O -0.535 6.535 7 N -0.653 5.653 8 C -0.016 4.016 9 C -0.074 4.074 10 C -0.174 4.174 11 C 0.112 3.888 12 C -0.468 4.468 13 H 0.081 0.919 14 C 0.088 3.912 15 N -0.768 5.768 16 Si 0.895 3.105 17 H -0.270 1.270 18 H -0.274 1.274 19 H -0.258 1.258 20 C -0.222 4.222 21 C -0.097 4.097 22 N -0.581 5.581 23 C 0.111 3.889 24 C -0.134 4.134 25 C -0.126 4.126 26 C -0.133 4.133 27 C 0.517 3.483 28 O -0.561 6.561 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.118 0.882 34 H 0.392 0.608 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.283 0.717 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.867 -1.032 9.251 17.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.057 3.943 3 H 0.109 0.891 4 C -0.205 4.205 5 C 0.289 3.711 6 O -0.413 6.413 7 N -0.295 5.295 8 C -0.108 4.108 9 C -0.094 4.094 10 C -0.193 4.193 11 C 0.109 3.891 12 C -0.495 4.495 13 H 0.099 0.901 14 C -0.133 4.133 15 N -0.391 5.391 16 Si 0.718 3.282 17 H -0.195 1.195 18 H -0.199 1.199 19 H -0.181 1.181 20 C -0.242 4.242 21 C -0.117 4.117 22 N -0.312 5.312 23 C -0.012 4.012 24 C -0.172 4.172 25 C -0.163 4.163 26 C -0.173 4.173 27 C 0.305 3.695 28 O -0.442 6.442 29 H 0.100 0.900 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.136 0.864 34 H 0.226 0.774 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.093 0.907 46 H 0.112 0.888 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -14.749 -0.622 9.387 17.494 hybrid contribution 0.632 0.017 -0.110 0.642 sum -14.117 -0.605 9.277 16.903 Atomic orbital electron populations 1.22207 0.94602 1.04218 1.01619 1.20756 0.93739 0.96219 0.83547 0.89063 1.22228 0.93013 1.05986 0.99315 1.20557 0.89483 0.79604 0.81485 1.90583 1.70088 1.42052 1.38533 1.42983 1.06114 1.57090 1.23350 1.17089 0.80454 0.96586 1.16718 1.20363 0.94455 0.95310 0.99223 1.20697 0.92280 1.00127 1.06226 1.17578 0.93155 0.90810 0.87554 1.19486 0.91684 0.93060 1.45296 0.90117 1.25928 0.99823 0.95262 0.92334 1.69946 1.38998 1.02368 1.27775 0.86525 0.81808 0.78939 0.80887 1.19493 1.19873 1.18117 1.20470 0.92695 1.00418 1.10629 1.20078 0.94457 0.94971 1.02200 1.47195 1.49709 1.11127 1.23131 1.21597 0.97030 0.94353 0.88220 1.21918 1.02404 0.96108 0.96781 1.21660 0.98412 0.95273 1.00977 1.21640 1.00047 0.99922 0.95707 1.20060 0.79501 0.81632 0.88262 1.90576 1.40724 1.69601 1.43277 0.89996 0.92771 0.91820 0.88875 0.86393 0.77448 0.88099 0.87693 0.90606 0.88768 0.89376 0.89025 0.91329 0.91519 0.89928 0.90862 0.90653 0.88784 0.88516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.79 9.08 37.16 0.34 -1.46 16 2 C 0.16 2.02 2.20 -67.93 -0.15 1.87 16 3 H 0.09 1.14 7.60 -51.93 -0.39 0.74 16 4 C -0.16 -2.23 5.00 -27.88 -0.14 -2.37 16 5 C 0.50 8.80 7.50 -10.99 -0.08 8.71 16 6 O -0.53 -10.72 10.82 5.55 0.06 -10.66 16 7 N -0.65 -11.94 5.30 -9.74 -0.05 -11.99 16 8 C -0.02 -0.37 6.25 -83.57 -0.52 -0.89 16 9 C -0.07 -1.82 8.59 -39.79 -0.34 -2.16 16 10 C -0.17 -4.62 8.74 -39.26 -0.34 -4.96 16 11 C 0.11 3.00 5.57 -106.80 -0.60 2.41 16 12 C -0.47 -12.40 8.94 -37.85 -0.34 -12.74 16 13 H 0.08 2.06 8.02 -52.49 -0.42 1.64 16 14 C 0.09 2.21 4.77 -17.33 -0.08 2.12 16 15 N -0.77 -19.73 11.78 55.55 0.65 -19.08 16 16 Si 0.90 18.36 29.66 -169.99 -5.04 13.31 16 17 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 18 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 19 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 20 C -0.22 -5.48 9.74 -39.26 -0.38 -5.87 16 21 C -0.10 -2.19 9.90 -39.79 -0.39 -2.58 16 22 N -0.58 -7.47 2.24 -167.26 -0.37 -7.85 16 23 C 0.11 1.29 5.76 -4.39 -0.03 1.26 16 24 C -0.13 -1.21 6.03 -26.50 -0.16 -1.37 16 25 C -0.13 -1.21 6.03 -26.51 -0.16 -1.37 16 26 C -0.13 -1.41 6.03 -28.10 -0.17 -1.58 16 27 C 0.52 7.01 6.88 -11.87 -0.08 6.93 16 28 O -0.56 -8.89 12.45 5.55 0.07 -8.82 16 29 H 0.08 1.02 6.01 -51.93 -0.31 0.71 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.12 1.74 5.73 -51.93 -0.30 1.44 16 34 H 0.39 5.91 8.82 -40.82 -0.36 5.55 16 35 H 0.10 2.47 6.45 -52.48 -0.34 2.14 16 36 H 0.11 2.87 6.52 -52.49 -0.34 2.53 16 37 H 0.28 6.55 8.30 -40.82 -0.34 6.21 16 38 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.09 1.36 6.30 -51.93 -0.33 1.03 16 41 H 0.07 0.70 8.03 -51.93 -0.42 0.28 16 42 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.89 8.12 -51.93 -0.42 0.47 16 46 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 371.70 15.07 5.60 5.60 Total: -1.00 -30.66 371.70 -9.71 -40.36 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: -6.99 Total: 13.16 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -3.63 Total: -14.05 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.23 Total: -38.91 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.13 Total: -19.48 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.04 Total: 13.31 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.66 -9.71 -40.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188983267.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.854 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds