Wall clock time and date at job start Tue Mar 31 2020 15:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47756 * 2 1 4 4 C 1.53002 * 109.47162 * 239.99324 * 2 1 3 5 5 C 1.50702 * 109.47352 * 175.00310 * 4 2 1 6 6 O 1.21284 * 119.99612 * 0.02562 * 5 4 2 7 7 N 1.34770 * 120.00224 * 180.02562 * 5 4 2 8 8 C 1.39233 * 120.00108 * 183.28977 * 7 5 4 9 9 C 1.39484 * 119.83506 * 322.14759 * 8 7 5 10 10 C 1.36374 * 120.17030 * 179.71416 * 9 8 7 11 11 C 1.40862 * 119.82726 * 0.56260 * 10 9 8 12 12 C 1.41154 * 120.16548 * 179.69524 * 11 10 9 13 13 H 1.07998 * 120.00376 * 158.02936 * 12 11 10 14 14 C 1.39911 * 119.99843 * 338.02801 * 12 11 10 15 15 N 1.30873 * 120.00122 * 327.60485 * 14 12 11 16 16 Si 1.86795 * 119.99884 * 147.60309 * 14 12 11 17 17 H 1.48499 * 109.47450 * 94.98926 * 16 14 12 18 18 H 1.48503 * 109.47075 * 214.98975 * 16 14 12 19 19 H 1.48506 * 109.47363 * 334.98717 * 16 14 12 20 20 C 1.40871 * 119.67683 * 359.71739 * 11 10 9 21 21 C 1.36380 * 119.82379 * 359.97438 * 20 11 10 22 22 N 1.46505 * 109.46679 * 120.00013 * 2 1 3 23 23 C 1.45758 * 117.94522 * 239.73239 * 22 2 1 24 24 C 1.53106 * 110.38534 * 160.74416 * 23 22 2 25 25 C 1.53349 * 108.52603 * 51.11841 * 24 23 22 26 26 C 1.53070 * 108.42378 * 292.30658 * 25 24 23 27 27 C 1.33358 * 117.94699 * 59.99790 * 22 2 1 28 28 O 1.21284 * 118.24482 * 2.24587 * 27 22 2 29 29 H 1.08995 * 109.47756 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46876 * 300.00452 * 1 2 3 31 31 H 1.09000 * 109.46808 * 59.99989 * 1 2 3 32 32 H 1.09005 * 109.46759 * 55.00392 * 4 2 1 33 33 H 1.08998 * 109.47609 * 295.00772 * 4 2 1 34 34 H 0.97004 * 119.99891 * 3.28708 * 7 5 4 35 35 H 1.08003 * 119.91091 * 0.02562 * 9 8 7 36 36 H 1.07997 * 120.08502 * 180.27731 * 10 9 8 37 37 H 0.96992 * 120.00114 * 179.97438 * 15 14 12 38 38 H 1.07994 * 120.09235 * 179.97438 * 20 11 10 39 39 H 1.07995 * 119.91420 * 179.97438 * 21 20 11 40 40 H 1.08994 * 109.30084 * 281.24237 * 23 22 2 41 41 H 1.08997 * 109.29876 * 40.61554 * 23 22 2 42 42 H 1.08997 * 109.80466 * 291.33088 * 24 23 22 43 43 H 1.08996 * 109.54271 * 170.75064 * 24 23 22 44 44 H 1.08996 * 109.67445 * 172.57678 * 25 24 23 45 45 H 1.08994 * 109.67787 * 52.04060 * 25 24 23 46 46 H 1.09003 * 109.40333 * 288.77476 * 26 25 24 47 47 H 1.09002 * 109.33004 * 168.98813 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 3.5419 -0.6152 -1.3127 6 8 4.1450 -0.0213 -0.4440 7 7 4.2149 -1.1800 -2.3346 8 6 5.6065 -1.1412 -2.3579 9 6 6.2764 -0.0014 -1.9131 10 6 7.6394 0.0418 -1.9274 11 6 8.3704 -1.0640 -2.4040 12 6 9.7812 -1.0244 -2.4280 13 1 10.3470 -1.9442 -2.4446 14 6 10.4466 0.2063 -2.4303 15 7 9.9057 1.2416 -3.0206 16 14 12.1070 0.3719 -1.5907 17 1 13.1884 0.1866 -2.5914 18 1 12.2216 1.7217 -0.9822 19 1 12.2311 -0.6609 -0.5309 20 6 7.6867 -2.2093 -2.8570 21 6 6.3235 -2.2401 -2.8307 22 7 2.0182 -0.6907 1.1962 23 6 2.8578 0.0586 2.1227 24 6 2.8767 -0.6213 3.4944 25 6 3.2230 -2.1024 3.2994 26 6 2.0606 -2.7788 2.5684 27 6 1.6711 -1.9670 1.3665 28 8 1.0057 -2.5007 0.5043 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6054 -0.2619 -2.1370 33 1 1.7516 -1.7716 -1.2055 34 1 3.7297 -1.6136 -3.0540 35 1 5.7143 0.8471 -1.5518 36 1 8.1567 0.9232 -1.5786 37 1 10.3668 2.0949 -3.0218 38 1 8.2405 -3.0606 -3.2241 39 1 5.7979 -3.1173 -3.1780 40 1 3.8725 0.1103 1.7282 41 1 2.4639 1.0694 2.2289 42 1 1.8968 -0.5335 3.9636 43 1 3.6303 -0.1494 4.1248 44 1 3.3710 -2.5755 4.2701 45 1 4.1320 -2.1915 2.7047 46 1 1.2075 -2.8603 3.2421 47 1 2.3662 -3.7751 2.2488 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188983267.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:52 Heat of formation + Delta-G solvation = -74.099792 kcal Electronic energy + Delta-G solvation = -28780.534749 eV Core-core repulsion = 24926.749770 eV Total energy + Delta-G solvation = -3853.784980 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.95869 -40.80905 -39.01544 -37.37829 -36.43471 -35.93345 -34.74773 -32.39589 -31.44073 -31.01350 -30.41259 -29.01213 -26.58517 -25.36518 -24.32003 -23.25567 -22.97676 -21.93200 -21.06471 -19.33209 -19.24073 -18.49089 -17.98283 -17.63669 -17.09578 -16.73918 -16.69961 -16.03419 -15.76584 -15.35481 -15.23919 -15.12858 -15.03129 -14.54715 -14.47153 -14.12888 -14.01717 -13.97763 -13.81877 -13.32886 -13.11474 -13.00304 -12.92407 -12.77397 -12.76203 -12.61528 -12.38073 -12.25382 -11.86158 -11.84976 -11.79246 -11.69989 -11.48482 -11.03645 -10.71025 -10.48081 -10.33408 -9.59511 -9.47073 -9.01420 -8.69731 -6.24055 0.84227 1.12518 1.35513 1.42718 1.53791 1.67565 1.86320 2.12386 2.17899 2.43464 2.65315 3.59848 3.68699 3.81818 3.84575 3.90965 3.93285 4.01750 4.26230 4.36548 4.40064 4.46740 4.51002 4.55873 4.61480 4.69752 4.80184 4.81890 4.90457 4.92541 4.97739 5.02082 5.08433 5.09766 5.11237 5.18632 5.26927 5.32377 5.37777 5.46653 5.64875 5.66538 5.86306 6.07379 6.09957 6.32725 6.62315 6.63523 6.77943 6.88676 6.99768 7.22889 7.48442 8.20040 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016168 B = 0.003046 C = 0.002857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.409066 B = 9189.860145 C = 9796.825371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.153 3.847 3 H 0.090 0.910 4 C -0.152 4.152 5 C 0.497 3.503 6 O -0.560 6.560 7 N -0.651 5.651 8 C -0.005 4.005 9 C -0.083 4.083 10 C -0.196 4.196 11 C 0.082 3.918 12 C -0.505 4.505 13 H 0.080 0.920 14 C 0.049 3.951 15 N -0.802 5.802 16 Si 0.971 3.029 17 H -0.257 1.257 18 H -0.265 1.265 19 H -0.259 1.259 20 C -0.235 4.235 21 C -0.096 4.096 22 N -0.582 5.582 23 C 0.109 3.891 24 C -0.127 4.127 25 C -0.122 4.122 26 C -0.131 4.131 27 C 0.505 3.495 28 O -0.588 6.588 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.124 0.876 33 H 0.112 0.888 34 H 0.411 0.589 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.292 0.708 38 H 0.105 0.895 39 H 0.124 0.876 40 H 0.054 0.946 41 H 0.083 0.917 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.099 0.901 45 H 0.044 0.956 46 H 0.119 0.881 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.215 -1.328 10.260 19.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 H 0.109 0.891 4 C -0.192 4.192 5 C 0.286 3.714 6 O -0.439 6.439 7 N -0.295 5.295 8 C -0.098 4.098 9 C -0.103 4.103 10 C -0.216 4.216 11 C 0.080 3.920 12 C -0.533 4.533 13 H 0.098 0.902 14 C -0.170 4.170 15 N -0.426 5.426 16 Si 0.791 3.209 17 H -0.181 1.181 18 H -0.190 1.190 19 H -0.183 1.183 20 C -0.255 4.255 21 C -0.116 4.116 22 N -0.313 5.313 23 C -0.013 4.013 24 C -0.165 4.165 25 C -0.160 4.160 26 C -0.171 4.171 27 C 0.295 3.705 28 O -0.471 6.471 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.101 0.899 32 H 0.142 0.858 33 H 0.130 0.870 34 H 0.247 0.753 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.123 0.877 39 H 0.142 0.858 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.113 0.887 44 H 0.117 0.883 45 H 0.063 0.937 46 H 0.137 0.863 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.126 -0.920 10.383 19.202 hybrid contribution 0.919 0.108 -0.453 1.031 sum -15.206 -0.812 9.930 18.180 Atomic orbital electron populations 1.22094 0.92721 1.03493 1.03105 1.20914 0.95134 0.95924 0.83083 0.89143 1.22208 0.89520 1.06084 1.01390 1.21346 0.91145 0.78328 0.80565 1.90598 1.71057 1.42907 1.39352 1.42968 1.04421 1.57604 1.24551 1.17169 0.82618 0.95530 1.14474 1.20408 0.93943 0.96179 0.99759 1.20612 0.93101 0.99935 1.07912 1.17895 0.93903 0.91724 0.88524 1.19734 0.92033 0.93980 1.47518 0.90162 1.26779 1.03744 0.94382 0.92108 1.69961 1.40953 1.03125 1.28530 0.85379 0.76901 0.78988 0.79639 1.18090 1.18966 1.18257 1.20716 0.93867 1.00218 1.10663 1.20394 0.93909 0.96010 1.01245 1.47323 1.49368 1.11224 1.23347 1.21605 0.94889 0.95555 0.89275 1.21914 1.03961 0.95292 0.95311 1.21635 0.96694 0.96049 1.01575 1.21681 1.01205 0.99145 0.95032 1.20638 0.79112 0.81841 0.88900 1.90557 1.42028 1.70116 1.44402 0.91664 0.91778 0.89896 0.85840 0.87009 0.75269 0.88533 0.89643 0.89690 0.87713 0.85813 0.92764 0.89865 0.89438 0.88713 0.88278 0.93671 0.86294 0.88863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.98 9.08 71.98 0.65 -2.32 16 2 C 0.15 3.62 2.20 44.99 0.10 3.72 16 3 H 0.09 2.15 7.60 -2.39 -0.02 2.13 16 4 C -0.15 -3.87 5.00 29.85 0.15 -3.72 16 5 C 0.50 17.11 7.50 87.66 0.66 17.77 16 6 O -0.56 -22.74 10.82 -3.04 -0.03 -22.77 16 7 N -0.65 -23.08 5.30 -303.11 -1.61 -24.69 16 8 C 0.00 -0.21 6.25 38.57 0.24 0.03 16 9 C -0.08 -4.22 8.59 22.14 0.19 -4.03 16 10 C -0.20 -10.88 8.74 22.48 0.20 -10.69 16 11 C 0.08 4.57 5.57 -21.28 -0.12 4.45 16 12 C -0.51 -27.68 8.94 23.39 0.21 -27.48 16 13 H 0.08 4.23 8.02 -2.91 -0.02 4.21 16 14 C 0.05 2.50 4.77 85.24 0.41 2.91 16 15 N -0.80 -42.45 11.78 21.82 0.26 -42.19 16 16 Si 0.97 38.15 29.66 68.60 2.03 40.19 16 17 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 18 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 19 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 20 C -0.23 -11.72 9.74 22.48 0.22 -11.50 16 21 C -0.10 -4.25 9.90 22.14 0.22 -4.03 16 22 N -0.58 -14.44 2.24 -802.26 -1.80 -16.23 16 23 C 0.11 2.48 5.76 86.55 0.50 2.98 16 24 C -0.13 -2.06 6.03 30.75 0.19 -1.88 16 25 C -0.12 -2.19 6.03 30.73 0.19 -2.00 16 26 C -0.13 -2.56 6.03 29.71 0.18 -2.38 16 27 C 0.51 13.19 6.88 87.71 0.60 13.79 16 28 O -0.59 -18.09 12.45 -3.04 -0.04 -18.12 16 29 H 0.06 1.51 6.01 -2.39 -0.01 1.50 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.12 2.39 8.14 -2.38 -0.02 2.38 16 33 H 0.11 3.14 5.73 -2.39 -0.01 3.12 16 34 H 0.41 11.53 8.82 -92.71 -0.82 10.71 16 35 H 0.10 4.91 6.45 -2.91 -0.02 4.89 16 36 H 0.09 4.96 6.52 -2.91 -0.02 4.94 16 37 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 38 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 39 H 0.12 4.56 8.06 -2.91 -0.02 4.53 16 40 H 0.05 1.66 6.30 -2.39 -0.02 1.64 16 41 H 0.08 1.60 8.03 -2.39 -0.02 1.58 16 42 H 0.09 1.11 8.12 -2.39 -0.02 1.09 16 43 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.04 1.08 8.12 -2.39 -0.02 1.06 16 46 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.09 1.88 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -69.27 371.70 3.76 -65.51 By element: Atomic # 1 Polarization: 42.52 SS G_CDS: 0.17 Total: 42.69 kcal Atomic # 6 Polarization: -29.16 SS G_CDS: 4.77 Total: -24.39 kcal Atomic # 7 Polarization: -79.96 SS G_CDS: -3.15 Total: -83.11 kcal Atomic # 8 Polarization: -40.82 SS G_CDS: -0.07 Total: -40.89 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 2.03 Total: 40.19 kcal Total: -69.27 3.76 -65.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188983267.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.591 kcal (2) G-P(sol) polarization free energy of solvation -69.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds