Wall clock time and date at job start Tue Mar 31 2020 16:20:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46892 * 109.47270 * 324.14651 * 3 2 1 5 5 C 1.46907 * 110.99861 * 66.05297 * 4 3 2 6 6 C 1.46900 * 111.00245 * 190.00196 * 4 3 2 7 7 H 1.09003 * 109.47222 * 295.37061 * 6 4 3 8 8 C 1.53001 * 109.46900 * 55.36551 * 6 4 3 9 9 C 1.50700 * 109.47467 * 175.36595 * 6 4 3 10 10 O 1.21298 * 119.99785 * 331.43784 * 9 6 4 11 11 N 1.34777 * 119.99854 * 151.43578 * 9 6 4 12 12 C 1.46500 * 119.99791 * 184.60794 * 11 9 6 13 13 C 1.50705 * 109.46996 * 270.00054 * 12 11 9 14 14 H 1.07996 * 119.99897 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99994 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00145 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00039 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47020 * 89.99802 * 17 15 13 19 19 H 1.48499 * 109.47067 * 210.00140 * 17 15 13 20 20 H 1.48502 * 109.46957 * 329.99944 * 17 15 13 21 21 C 1.40121 * 120.00209 * 4.60592 * 11 9 6 22 22 C 1.38721 * 120.08757 * 93.55617 * 21 11 9 23 23 C 1.38198 * 119.98562 * 180.23321 * 22 21 11 24 24 C 1.38279 * 120.15958 * 359.48514 * 23 22 21 25 25 C 1.38245 * 120.18098 * 0.51594 * 24 23 22 26 26 C 1.38548 * 120.01063 * 359.73815 * 25 24 23 27 27 O 1.35980 * 120.07615 * 180.02562 * 26 25 24 28 28 C 1.42894 * 117.00558 * 359.97438 * 27 26 25 29 29 H 4.40884 * 5.52111 * 180.02562 * 4 1 2 30 30 H 1.09001 * 109.46742 * 204.15080 * 3 2 1 31 31 H 1.08997 * 109.47108 * 84.15555 * 3 2 1 32 32 H 1.08991 * 109.47187 * 189.12586 * 5 4 3 33 33 H 1.09004 * 109.46600 * 309.12433 * 5 4 3 34 34 H 1.09001 * 109.47118 * 69.12420 * 5 4 3 35 35 H 1.08995 * 109.47355 * 64.12472 * 8 6 4 36 36 H 1.09003 * 109.47245 * 184.12619 * 8 6 4 37 37 H 1.09004 * 109.47050 * 304.12436 * 8 6 4 38 38 H 1.09003 * 109.47215 * 29.99923 * 12 11 9 39 39 H 1.08996 * 109.47506 * 150.00254 * 12 11 9 40 40 H 0.97001 * 120.00221 * 179.97438 * 16 15 13 41 41 H 1.08003 * 120.00844 * 359.94963 * 22 21 11 42 42 H 1.07998 * 119.92342 * 179.74046 * 23 22 21 43 43 H 1.08008 * 119.91071 * 180.25344 * 24 23 22 44 44 H 1.08003 * 119.98972 * 179.77160 * 25 24 23 45 45 H 1.09001 * 109.47124 * 299.99782 * 28 27 26 46 46 H 1.09004 * 109.46934 * 59.99441 * 28 27 26 47 47 H 1.08998 * 109.47418 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.1216 0.8112 5 6 2.7874 -2.4086 0.1946 6 6 4.5849 -1.0189 1.0312 7 1 5.1049 -1.1132 0.0779 8 6 4.9106 0.3386 1.6575 9 6 5.0316 -2.1199 1.9582 10 8 4.2617 -2.5702 2.7802 11 7 6.2866 -2.6041 1.8739 12 6 6.6902 -3.7414 2.7044 13 6 7.2425 -3.2370 4.0128 14 1 7.2887 -2.1755 4.2060 15 6 7.6889 -4.1307 4.9630 16 7 7.6332 -5.4235 4.7275 17 14 8.3728 -3.5055 6.5850 18 1 7.2713 -3.3863 7.5736 19 1 9.3925 -4.4584 7.0924 20 1 8.9985 -2.1747 6.3782 21 6 7.2052 -2.0198 0.9917 22 6 8.0620 -1.0245 1.4386 23 6 8.9639 -0.4464 0.5655 24 6 9.0222 -0.8649 -0.7511 25 6 8.1715 -1.8562 -1.2036 26 6 7.2609 -2.4372 -0.3360 27 8 6.4239 -3.4128 -0.7795 28 6 6.5372 -3.7899 -2.1531 29 1 -1.0498 -0.0004 0.0000 30 1 3.0088 0.9386 0.4205 31 1 3.0094 -0.1038 -1.0223 32 1 3.0158 -3.2176 0.8884 33 1 1.7233 -2.4219 -0.0413 34 1 3.3642 -2.5412 -0.7207 35 1 4.4503 0.4038 2.6433 36 1 5.9912 0.4447 1.7533 37 1 4.5224 1.1345 1.0219 38 1 5.8253 -4.3766 2.8959 39 1 7.4559 -4.3173 2.1848 40 1 7.9476 -6.0523 5.3959 41 1 8.0211 -0.6984 2.4673 42 1 9.6276 0.3313 0.9134 43 1 9.7314 -0.4131 -1.4289 44 1 8.2172 -2.1781 -2.2335 45 1 6.3389 -2.9242 -2.7851 46 1 7.5448 -4.1579 -2.3469 47 1 5.8149 -4.5754 -2.3751 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000192228071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:43 Heat of formation + Delta-G solvation = 39.097503 kcal Electronic energy + Delta-G solvation = -29715.382005 eV Core-core repulsion = 25866.505628 eV Total energy + Delta-G solvation = -3848.876377 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.51002 -39.14073 -37.45033 -36.90637 -34.70961 -33.17032 -32.58203 -30.81582 -30.08335 -29.52265 -27.99188 -27.23745 -26.89701 -24.62528 -23.39341 -22.64775 -21.98314 -21.16034 -18.98051 -18.29264 -17.69182 -16.80582 -16.59206 -16.16566 -15.84000 -15.55924 -15.15179 -15.08030 -14.82514 -14.51254 -14.12962 -13.93304 -13.83417 -13.58878 -13.01793 -12.88901 -12.66830 -12.49290 -12.21905 -12.18727 -11.98765 -11.57809 -11.55294 -11.36450 -11.28242 -11.20133 -10.99882 -10.99177 -10.81903 -10.57359 -10.43229 -10.13167 -10.11112 -9.61354 -9.10319 -8.56503 -8.39363 -8.24629 -7.87864 -7.76160 -6.00233 -4.04247 1.45625 1.58862 2.66854 2.85361 3.33427 3.34414 3.40305 3.41522 3.46282 3.76153 3.89918 4.22007 4.42627 4.48228 4.82936 4.90966 5.07678 5.14791 5.17958 5.23549 5.28303 5.32974 5.34690 5.36160 5.40750 5.48108 5.56916 5.68192 5.71449 5.77794 5.85633 5.91230 5.96187 6.06062 6.26150 6.34838 6.36985 6.55006 6.67885 6.88286 7.01222 7.08457 7.20205 7.44303 7.46445 7.61721 7.63153 7.96022 8.25955 8.48445 8.93607 9.13107 9.59970 11.08286 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009501 B = 0.004998 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.336305 B = 5601.406928 C = 6992.635386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.170 4.170 3 C 0.154 3.846 4 N -0.515 5.515 5 C 0.025 3.975 6 C 0.069 3.931 7 H 0.057 0.943 8 C -0.146 4.146 9 C 0.525 3.475 10 O -0.509 6.509 11 N -0.554 5.554 12 C 0.256 3.744 13 C -0.522 4.522 14 H 0.058 0.942 15 C 0.062 3.938 16 N -0.895 5.895 17 Si 0.897 3.103 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.125 3.875 22 C -0.069 4.069 23 C -0.151 4.151 24 C -0.087 4.087 25 C -0.209 4.209 26 C 0.119 3.881 27 O -0.304 6.304 28 C 0.028 3.972 29 H 0.216 0.784 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.024 0.976 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.031 0.969 40 H 0.263 0.737 41 H 0.137 0.863 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.126 0.874 45 H 0.050 0.950 46 H 0.054 0.946 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 11.048 -16.952 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.170 4.170 3 C 0.028 3.972 4 N -0.240 5.240 5 C -0.123 4.123 6 C -0.043 4.043 7 H 0.075 0.925 8 C -0.204 4.204 9 C 0.311 3.689 10 O -0.383 6.383 11 N -0.284 5.284 12 C 0.138 3.862 13 C -0.561 4.561 14 H 0.076 0.924 15 C -0.140 4.140 16 N -0.534 5.534 17 Si 0.724 3.276 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.199 1.199 21 C 0.033 3.967 22 C -0.088 4.088 23 C -0.170 4.170 24 C -0.106 4.106 25 C -0.228 4.228 26 C 0.072 3.928 27 O -0.217 6.217 28 C -0.068 4.068 29 H 0.233 0.767 30 H 0.122 0.878 31 H 0.072 0.928 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.043 0.957 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.049 0.951 40 H 0.072 0.928 41 H 0.155 0.845 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.144 0.856 45 H 0.069 0.931 46 H 0.073 0.927 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.115 10.471 -15.820 19.225 hybrid contribution 0.918 0.079 -0.176 0.938 sum -2.197 10.550 -15.996 19.287 Atomic orbital electron populations 1.24815 0.95801 1.00506 1.01309 1.22811 0.94103 1.00292 0.99805 1.19153 0.85272 0.96426 0.96353 1.61677 1.12551 1.02099 1.47630 1.22448 1.00532 0.91583 0.97746 1.21619 0.87884 0.96476 0.98279 0.92488 1.21900 1.02409 0.93862 1.02192 1.19952 0.81708 0.82975 0.84283 1.90692 1.52496 1.59006 1.36070 1.45730 1.08962 1.34036 1.39639 1.19320 0.96282 0.82142 0.88464 1.21389 1.40983 0.93268 1.00440 0.92392 1.24910 0.95877 0.94741 0.98450 1.69938 1.47268 1.01015 1.35156 0.86521 0.78682 0.78512 0.83847 1.20536 1.21230 1.19896 1.17029 0.96204 0.96853 0.86642 1.21419 0.93319 0.93844 1.00246 1.20963 1.00435 1.02081 0.93545 1.20877 0.97754 0.96075 0.95850 1.21062 1.00058 1.02016 0.99666 1.19455 0.90937 0.89322 0.93059 1.86229 1.56043 1.51905 1.27487 1.23028 1.02652 1.00249 0.80855 0.76712 0.87836 0.92776 0.89959 0.91508 0.95719 0.90786 0.91189 0.91713 0.93692 0.95090 0.92774 0.84514 0.85761 0.86047 0.85631 0.93117 0.92711 0.88477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.37 19.25 29.55 0.57 -1.80 16 2 C -0.17 -2.23 12.32 -37.12 -0.46 -2.69 16 3 C 0.15 1.97 5.20 -6.62 -0.03 1.94 16 4 N -0.51 -8.38 4.32 -239.80 -1.04 -9.42 16 5 C 0.02 0.40 9.04 60.07 0.54 0.94 16 6 C 0.07 1.16 1.80 -68.86 -0.12 1.03 16 7 H 0.06 0.91 6.44 -51.93 -0.33 0.58 16 8 C -0.15 -2.10 8.95 37.16 0.33 -1.77 16 9 C 0.52 11.47 5.86 -10.99 -0.06 11.40 16 10 O -0.51 -13.31 15.26 5.54 0.08 -13.23 16 11 N -0.55 -12.30 2.24 -114.59 -0.26 -12.56 16 12 C 0.26 6.89 5.12 -5.19 -0.03 6.87 16 13 C -0.52 -14.85 9.39 -34.44 -0.32 -15.18 16 14 H 0.06 1.62 7.80 -52.49 -0.41 1.21 16 15 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 16 N -0.89 -26.92 13.29 55.43 0.74 -26.18 16 17 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 18 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.13 2.31 3.74 -83.50 -0.31 2.00 16 22 C -0.07 -1.13 8.52 -39.42 -0.34 -1.47 16 23 C -0.15 -1.96 10.04 -39.58 -0.40 -2.36 16 24 C -0.09 -1.02 10.04 -39.56 -0.40 -1.42 16 25 C -0.21 -2.66 9.04 -39.46 -0.36 -3.02 16 26 C 0.12 1.93 5.79 -39.08 -0.23 1.70 16 27 O -0.30 -4.91 10.24 -19.68 -0.20 -5.11 16 28 C 0.03 0.29 9.81 101.05 0.99 1.28 16 29 H 0.22 1.67 7.80 -54.10 -0.42 1.25 16 30 H 0.10 1.17 5.60 -51.93 -0.29 0.88 16 31 H 0.05 0.61 8.12 -51.93 -0.42 0.19 16 32 H 0.08 1.58 6.62 -51.93 -0.34 1.23 16 33 H 0.07 0.98 7.03 -51.93 -0.37 0.61 16 34 H 0.02 0.36 8.13 -51.93 -0.42 -0.06 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.07 0.97 6.54 -51.93 -0.34 0.63 16 37 H 0.06 0.72 5.90 -51.93 -0.31 0.42 16 38 H 0.05 1.36 7.49 -51.93 -0.39 0.97 16 39 H 0.03 0.87 8.05 -51.93 -0.42 0.46 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 41 H 0.14 2.35 8.04 -52.48 -0.42 1.93 16 42 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 43 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 44 H 0.13 1.26 6.30 -52.48 -0.33 0.93 16 45 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 46 H 0.05 0.53 7.66 -51.93 -0.40 0.13 16 47 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 391.46 15.07 5.90 5.90 Total: -1.00 -34.97 391.46 -7.35 -42.32 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -6.84 Total: 2.11 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -0.72 Total: -0.84 kcal Atomic # 7 Polarization: -47.60 SS G_CDS: -0.56 Total: -48.16 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.12 Total: -18.34 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.97 -7.35 -42.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192228071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.414 kcal (2) G-P(sol) polarization free energy of solvation -34.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds