Wall clock time and date at job start Tue Mar 31 2020 16:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46892 * 109.47270 * 324.14651 * 3 2 1 5 5 C 1.46907 * 110.99861 * 66.05297 * 4 3 2 6 6 C 1.46900 * 111.00245 * 190.00196 * 4 3 2 7 7 H 1.09003 * 109.47222 * 295.37061 * 6 4 3 8 8 C 1.53001 * 109.46900 * 55.36551 * 6 4 3 9 9 C 1.50700 * 109.47467 * 175.36595 * 6 4 3 10 10 O 1.21298 * 119.99785 * 331.43784 * 9 6 4 11 11 N 1.34777 * 119.99854 * 151.43578 * 9 6 4 12 12 C 1.46500 * 119.99791 * 184.60794 * 11 9 6 13 13 C 1.50705 * 109.46996 * 270.00054 * 12 11 9 14 14 H 1.07996 * 119.99897 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99994 * 179.97438 * 13 12 11 16 16 N 1.31520 * 120.00145 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00039 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47020 * 89.99802 * 17 15 13 19 19 H 1.48499 * 109.47067 * 210.00140 * 17 15 13 20 20 H 1.48502 * 109.46957 * 329.99944 * 17 15 13 21 21 C 1.40121 * 120.00209 * 4.60592 * 11 9 6 22 22 C 1.38721 * 120.08757 * 93.55617 * 21 11 9 23 23 C 1.38198 * 119.98562 * 180.23321 * 22 21 11 24 24 C 1.38279 * 120.15958 * 359.48514 * 23 22 21 25 25 C 1.38245 * 120.18098 * 0.51594 * 24 23 22 26 26 C 1.38548 * 120.01063 * 359.73815 * 25 24 23 27 27 O 1.35980 * 120.07615 * 180.02562 * 26 25 24 28 28 C 1.42894 * 117.00558 * 359.97438 * 27 26 25 29 29 H 4.40884 * 5.52111 * 180.02562 * 4 1 2 30 30 H 1.09001 * 109.46742 * 204.15080 * 3 2 1 31 31 H 1.08997 * 109.47108 * 84.15555 * 3 2 1 32 32 H 1.08991 * 109.47187 * 189.12586 * 5 4 3 33 33 H 1.09004 * 109.46600 * 309.12433 * 5 4 3 34 34 H 1.09001 * 109.47118 * 69.12420 * 5 4 3 35 35 H 1.08995 * 109.47355 * 64.12472 * 8 6 4 36 36 H 1.09003 * 109.47245 * 184.12619 * 8 6 4 37 37 H 1.09004 * 109.47050 * 304.12436 * 8 6 4 38 38 H 1.09003 * 109.47215 * 29.99923 * 12 11 9 39 39 H 1.08996 * 109.47506 * 150.00254 * 12 11 9 40 40 H 0.97001 * 120.00221 * 179.97438 * 16 15 13 41 41 H 1.08003 * 120.00844 * 359.94963 * 22 21 11 42 42 H 1.07998 * 119.92342 * 179.74046 * 23 22 21 43 43 H 1.08008 * 119.91071 * 180.25344 * 24 23 22 44 44 H 1.08003 * 119.98972 * 179.77160 * 25 24 23 45 45 H 1.09001 * 109.47124 * 299.99782 * 28 27 26 46 46 H 1.09004 * 109.46934 * 59.99441 * 28 27 26 47 47 H 1.08998 * 109.47418 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.1216 0.8112 5 6 2.7874 -2.4086 0.1946 6 6 4.5849 -1.0189 1.0312 7 1 5.1049 -1.1132 0.0779 8 6 4.9106 0.3386 1.6575 9 6 5.0316 -2.1199 1.9582 10 8 4.2617 -2.5702 2.7802 11 7 6.2866 -2.6041 1.8739 12 6 6.6902 -3.7414 2.7044 13 6 7.2425 -3.2370 4.0128 14 1 7.2887 -2.1755 4.2060 15 6 7.6889 -4.1307 4.9630 16 7 7.6332 -5.4235 4.7275 17 14 8.3728 -3.5055 6.5850 18 1 7.2713 -3.3863 7.5736 19 1 9.3925 -4.4584 7.0924 20 1 8.9985 -2.1747 6.3782 21 6 7.2052 -2.0198 0.9917 22 6 8.0620 -1.0245 1.4386 23 6 8.9639 -0.4464 0.5655 24 6 9.0222 -0.8649 -0.7511 25 6 8.1715 -1.8562 -1.2036 26 6 7.2609 -2.4372 -0.3360 27 8 6.4239 -3.4128 -0.7795 28 6 6.5372 -3.7899 -2.1531 29 1 -1.0498 -0.0004 0.0000 30 1 3.0088 0.9386 0.4205 31 1 3.0094 -0.1038 -1.0223 32 1 3.0158 -3.2176 0.8884 33 1 1.7233 -2.4219 -0.0413 34 1 3.3642 -2.5412 -0.7207 35 1 4.4503 0.4038 2.6433 36 1 5.9912 0.4447 1.7533 37 1 4.5224 1.1345 1.0219 38 1 5.8253 -4.3766 2.8959 39 1 7.4559 -4.3173 2.1848 40 1 7.9476 -6.0523 5.3959 41 1 8.0211 -0.6984 2.4673 42 1 9.6276 0.3313 0.9134 43 1 9.7314 -0.4131 -1.4289 44 1 8.2172 -2.1781 -2.2335 45 1 6.3389 -2.9242 -2.7851 46 1 7.5448 -4.1579 -2.3469 47 1 5.8149 -4.5754 -2.3751 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192228071.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:42 Heat of formation + Delta-G solvation = 15.558717 kcal Electronic energy + Delta-G solvation = -29716.402723 eV Core-core repulsion = 25866.505628 eV Total energy + Delta-G solvation = -3849.897095 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.85826 -40.47236 -38.69152 -38.18372 -36.40164 -34.81852 -34.08948 -32.09779 -31.21126 -30.86637 -29.37875 -28.65854 -28.04117 -25.99218 -25.19860 -24.01731 -23.09455 -22.59578 -20.37940 -19.36175 -18.90057 -18.54328 -18.14228 -17.65384 -17.12311 -16.74874 -16.56622 -16.34733 -16.04608 -16.02748 -15.45913 -15.35103 -15.10828 -14.75844 -14.41697 -14.18644 -14.11714 -13.96407 -13.62916 -13.40806 -13.32531 -13.11338 -12.92382 -12.75202 -12.67042 -12.61214 -12.53844 -12.49783 -12.27438 -11.95879 -11.90786 -11.67110 -11.42232 -11.10170 -10.70684 -10.64190 -9.76847 -9.64218 -9.43108 -9.02969 -8.23022 -6.37316 0.31912 0.49585 1.34949 1.39318 1.48400 1.58607 1.81427 1.93537 2.21819 2.38051 2.44655 2.79881 3.02452 3.06983 3.51433 3.53544 3.97064 4.01986 4.04153 4.09969 4.16024 4.30501 4.31417 4.39530 4.41445 4.49510 4.53886 4.54645 4.65373 4.67897 4.70865 4.79674 4.89630 4.90400 5.01202 5.06980 5.13228 5.18866 5.35248 5.46214 5.54244 5.62977 5.76061 5.82015 5.90786 5.94893 6.03483 6.43836 6.69426 6.72534 6.84569 7.27491 7.46871 8.85373 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.009501 B = 0.004998 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2946.336305 B = 5601.406928 C = 6992.635386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.214 4.214 3 C 0.157 3.843 4 N -0.538 5.538 5 C 0.036 3.964 6 C 0.088 3.912 7 H 0.071 0.929 8 C -0.141 4.141 9 C 0.516 3.484 10 O -0.571 6.571 11 N -0.552 5.552 12 C 0.277 3.723 13 C -0.534 4.534 14 H 0.056 0.944 15 C 0.007 3.993 16 N -0.931 5.931 17 Si 0.968 3.032 18 H -0.281 1.281 19 H -0.274 1.274 20 H -0.257 1.257 21 C 0.077 3.923 22 C -0.084 4.084 23 C -0.144 4.144 24 C -0.068 4.068 25 C -0.199 4.199 26 C 0.108 3.892 27 O -0.341 6.341 28 C 0.019 3.981 29 H 0.247 0.753 30 H 0.119 0.881 31 H 0.075 0.925 32 H 0.037 0.963 33 H 0.079 0.921 34 H 0.037 0.963 35 H 0.051 0.949 36 H 0.073 0.927 37 H 0.105 0.895 38 H -0.006 1.006 39 H 0.008 0.992 40 H 0.267 0.733 41 H 0.116 0.884 42 H 0.155 0.845 43 H 0.168 0.832 44 H 0.160 0.840 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.892 14.179 -19.521 24.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.214 4.214 3 C 0.032 3.968 4 N -0.263 5.263 5 C -0.112 4.112 6 C -0.024 4.024 7 H 0.088 0.912 8 C -0.198 4.198 9 C 0.305 3.695 10 O -0.449 6.449 11 N -0.280 5.280 12 C 0.157 3.843 13 C -0.573 4.573 14 H 0.075 0.925 15 C -0.191 4.191 16 N -0.571 5.571 17 Si 0.792 3.208 18 H -0.207 1.207 19 H -0.199 1.199 20 H -0.181 1.181 21 C -0.014 4.014 22 C -0.103 4.103 23 C -0.162 4.162 24 C -0.086 4.086 25 C -0.218 4.218 26 C 0.062 3.938 27 O -0.255 6.255 28 C -0.075 4.075 29 H 0.263 0.737 30 H 0.137 0.863 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.012 0.988 39 H 0.026 0.974 40 H 0.075 0.925 41 H 0.134 0.866 42 H 0.173 0.827 43 H 0.185 0.815 44 H 0.177 0.823 45 H 0.096 0.904 46 H 0.085 0.915 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.618 13.640 -18.448 23.000 hybrid contribution 0.437 -0.928 0.488 1.136 sum -1.181 12.712 -17.960 22.035 Atomic orbital electron populations 1.25674 0.96722 0.98633 0.99617 1.23147 0.94823 1.02011 1.01431 1.19225 0.85438 0.95273 0.96897 1.61590 1.12159 1.03145 1.49413 1.22260 1.01425 0.90670 0.96887 1.21425 0.88421 0.95191 0.97334 0.91186 1.21918 1.02720 0.93530 1.01681 1.20973 0.80905 0.83388 0.84222 1.90638 1.54088 1.61296 1.38914 1.45484 1.10191 1.32740 1.39600 1.18645 0.93112 0.83458 0.89088 1.21620 1.41118 0.93259 1.01279 0.92533 1.25887 0.96018 0.94849 1.02395 1.70076 1.48029 1.02369 1.36603 0.85403 0.78028 0.78811 0.78532 1.20655 1.19935 1.18130 1.17366 0.97493 0.99143 0.87380 1.21368 0.94410 0.94354 1.00170 1.21289 0.99299 1.02000 0.93658 1.21413 0.97028 0.94468 0.95696 1.21465 0.98475 1.01293 1.00596 1.19556 0.91899 0.89733 0.92656 1.86185 1.56626 1.52240 1.30476 1.23335 1.03759 1.01702 0.78736 0.73656 0.86343 0.90751 0.94392 0.90275 0.94405 0.92948 0.90813 0.87646 0.98819 0.97401 0.92453 0.86571 0.82705 0.81488 0.82260 0.90439 0.91526 0.87717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.95 19.25 74.32 1.43 -2.52 16 2 C -0.21 -5.30 12.32 31.12 0.38 -4.91 16 3 C 0.16 3.76 5.20 84.50 0.44 4.20 16 4 N -0.54 -17.76 4.32 -912.60 -3.95 -21.71 16 5 C 0.04 1.19 9.04 127.69 1.15 2.35 16 6 C 0.09 3.01 1.80 44.17 0.08 3.09 16 7 H 0.07 2.22 6.44 -2.39 -0.02 2.21 16 8 C -0.14 -4.00 8.95 71.98 0.64 -3.36 16 9 C 0.52 24.31 5.86 87.66 0.51 24.82 16 10 O -0.57 -32.79 15.26 -3.09 -0.05 -32.84 16 11 N -0.55 -26.41 2.24 -634.85 -1.42 -27.83 16 12 C 0.28 16.33 5.12 85.63 0.44 16.77 16 13 C -0.53 -32.27 9.39 25.60 0.24 -32.03 16 14 H 0.06 3.34 7.80 -2.91 -0.02 3.32 16 15 C 0.01 0.43 5.46 84.65 0.46 0.89 16 16 N -0.93 -58.74 13.29 21.45 0.28 -58.45 16 17 Si 0.97 46.37 29.54 68.60 2.03 48.39 16 18 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 19 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 21 C 0.08 2.93 3.74 38.18 0.14 3.08 16 22 C -0.08 -2.74 8.52 22.38 0.19 -2.55 16 23 C -0.14 -3.27 10.04 22.27 0.22 -3.04 16 24 C -0.07 -1.27 10.04 22.28 0.22 -1.04 16 25 C -0.20 -4.36 9.04 22.35 0.20 -4.16 16 26 C 0.11 3.43 5.79 22.60 0.13 3.56 16 27 O -0.34 -11.17 10.24 -93.32 -0.96 -12.12 16 28 C 0.02 0.37 9.81 113.37 1.11 1.48 16 29 H 0.25 3.10 7.80 -4.42 -0.03 3.06 16 30 H 0.12 2.39 5.60 -2.39 -0.01 2.37 16 31 H 0.07 1.47 8.12 -2.39 -0.02 1.45 16 32 H 0.04 1.59 6.62 -2.39 -0.02 1.57 16 33 H 0.08 2.37 7.03 -2.39 -0.02 2.36 16 34 H 0.04 1.13 8.13 -2.39 -0.02 1.11 16 35 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.07 2.03 6.54 -2.39 -0.02 2.01 16 37 H 0.11 2.09 5.90 -2.38 -0.01 2.07 16 38 H -0.01 -0.42 7.49 -2.39 -0.02 -0.44 16 39 H 0.01 0.49 8.05 -2.39 -0.02 0.47 16 40 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 41 H 0.12 4.16 8.04 -2.91 -0.02 4.14 16 42 H 0.16 2.54 8.06 -2.91 -0.02 2.52 16 43 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.16 2.37 6.30 -2.91 -0.02 2.35 16 45 H 0.08 1.09 7.66 -2.39 -0.02 1.07 16 46 H 0.07 1.13 7.66 -2.38 -0.02 1.11 16 47 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -85.37 391.46 4.92 -80.46 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.96 Total: 17.48 kcal Atomic # 6 Polarization: -1.40 SS G_CDS: 8.01 Total: 6.62 kcal Atomic # 7 Polarization: -102.91 SS G_CDS: -5.08 Total: -107.99 kcal Atomic # 8 Polarization: -43.96 SS G_CDS: -1.00 Total: -44.96 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 2.03 Total: 48.39 kcal Total: -85.37 4.92 -80.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192228071.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.015 kcal (2) G-P(sol) polarization free energy of solvation -85.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds