Wall clock time and date at job start Tue Mar 31 2020 15:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46942 * 2 1 4 4 C 1.50704 * 109.47195 * 239.99678 * 2 1 3 5 5 H 1.08000 * 119.99913 * 245.46231 * 4 2 1 6 6 C 1.37875 * 119.99522 * 65.46447 * 4 2 1 7 7 N 1.31507 * 120.00561 * 9.55797 * 6 4 2 8 8 Si 1.86809 * 119.99683 * 189.55794 * 6 4 2 9 9 H 1.48496 * 109.47074 * 84.99438 * 8 6 4 10 10 H 1.48500 * 109.46990 * 204.99664 * 8 6 4 11 11 H 1.48499 * 109.46568 * 324.99230 * 8 6 4 12 12 N 1.46503 * 109.46744 * 119.99823 * 2 1 3 13 13 C 1.34767 * 120.00162 * 275.00084 * 12 2 1 14 14 O 1.21284 * 120.00196 * 0.02562 * 13 12 2 15 15 C 1.50704 * 120.00058 * 179.72699 * 13 12 2 16 16 H 1.09001 * 109.87051 * 300.97246 * 15 13 12 17 17 C 1.54317 * 109.88213 * 61.98953 * 15 13 12 18 18 C 1.55553 * 102.76107 * 97.25754 * 17 15 13 19 19 C 1.54910 * 101.59585 * 35.53322 * 18 17 15 20 20 N 1.47028 * 109.88176 * 179.97438 * 15 13 12 21 21 C 1.34766 * 125.65107 * 59.55918 * 20 15 13 22 22 O 1.21284 * 120.00111 * 359.97438 * 21 20 15 23 23 C 1.50699 * 120.00254 * 180.02562 * 21 20 15 24 24 C 1.50693 * 109.47650 * 179.97438 * 23 21 20 25 25 C 1.38245 * 119.99817 * 269.72658 * 24 23 21 26 26 C 1.38230 * 119.99856 * 179.76264 * 25 24 23 27 27 C 1.38235 * 120.00138 * 0.48680 * 26 25 24 28 28 C 1.38238 * 119.99914 * 359.78730 * 27 26 25 29 29 C 1.38234 * 120.00194 * 359.95645 * 28 27 26 30 30 H 1.09002 * 109.46782 * 183.67572 * 1 2 3 31 31 H 1.08993 * 109.47096 * 303.67978 * 1 2 3 32 32 H 1.09002 * 109.46390 * 63.68167 * 1 2 3 33 33 H 0.96997 * 120.00797 * 179.97438 * 7 6 4 34 34 H 0.97008 * 119.99975 * 94.99814 * 12 2 1 35 35 H 1.09001 * 110.72059 * 215.58383 * 17 15 13 36 36 H 1.09001 * 110.72331 * 338.86389 * 17 15 13 37 37 H 1.09001 * 111.02685 * 277.44472 * 18 17 15 38 38 H 1.08993 * 111.00165 * 153.61186 * 18 17 15 39 39 H 1.09003 * 110.36663 * 204.12530 * 19 18 17 40 40 H 1.08991 * 110.46592 * 81.84101 * 19 18 17 41 41 H 1.09005 * 109.46642 * 299.99755 * 23 21 20 42 42 H 1.09007 * 109.47338 * 59.99306 * 23 21 20 43 43 H 1.07998 * 119.99434 * 359.97438 * 25 24 23 44 44 H 1.08002 * 119.99798 * 180.25090 * 26 25 24 45 45 H 1.07998 * 120.00345 * 179.76760 * 27 26 25 46 46 H 1.07998 * 119.99758 * 179.97438 * 28 27 26 47 47 H 1.07995 * 120.00018 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5786 -1.6371 -1.1337 6 6 1.7947 -0.1774 -2.4795 7 7 1.2995 1.0355 -2.5935 8 14 2.1761 -1.1782 -4.0101 9 1 1.0241 -2.0610 -4.3241 10 1 2.4229 -0.2615 -5.1521 11 1 3.3846 -2.0073 -3.7708 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3571 14 8 1.8581 1.1584 2.4117 15 6 2.6434 -0.7302 3.5892 16 1 1.9807 -1.5618 3.8289 17 6 4.0761 -1.2523 3.3522 18 6 4.9566 -0.1457 4.0002 19 6 4.0870 0.2747 5.2113 20 7 2.6981 0.2073 4.7205 21 6 1.6522 0.8909 5.2254 22 8 0.5489 0.7568 4.7401 23 6 1.8538 1.8228 6.3924 24 6 0.5382 2.4589 6.7605 25 6 0.1606 3.6536 6.1763 26 6 -1.0483 4.2345 6.5103 27 6 -1.8753 3.6261 7.4360 28 6 -1.4951 2.4344 8.0244 29 6 -0.2885 1.8507 7.6865 30 1 -0.3633 -1.0256 0.0659 31 1 -0.3633 0.5699 0.8551 32 1 -0.3632 0.4557 -0.9212 33 1 1.1326 1.4107 -3.4723 34 1 2.2490 -1.6319 1.1527 35 1 4.2259 -2.2085 3.8534 36 1 4.2839 -1.3379 2.2856 37 1 5.1022 0.6894 3.3151 38 1 5.9138 -0.5506 4.3285 39 1 4.3314 1.2914 5.5191 40 1 4.2298 -0.4169 6.0414 41 1 2.2370 1.2608 7.2442 42 1 2.5683 2.5992 6.1183 43 1 0.8088 4.1311 5.4564 44 1 -1.3452 5.1658 6.0508 45 1 -2.8181 4.0819 7.6998 46 1 -2.1410 1.9593 8.7480 47 1 0.0087 0.9199 8.1466 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194629371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:05 Heat of formation + Delta-G solvation = -46.341934 kcal Electronic energy + Delta-G solvation = -28504.484514 eV Core-core repulsion = 24651.903206 eV Total energy + Delta-G solvation = -3852.581309 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.45753 -39.26798 -38.02866 -36.85205 -34.62618 -32.96010 -32.38684 -31.45336 -30.86573 -30.02124 -28.35758 -27.41860 -25.16862 -23.92747 -22.56898 -22.16513 -21.73818 -20.77021 -19.49027 -18.90814 -17.47311 -17.04913 -16.76264 -16.03391 -15.63888 -15.36617 -15.18223 -14.87749 -14.77980 -14.26194 -13.95816 -13.67388 -13.41469 -13.36637 -13.12055 -12.96499 -12.83758 -12.60140 -12.29184 -12.26495 -11.91846 -11.74324 -11.40992 -11.31835 -11.09962 -11.07701 -10.99762 -10.98928 -10.86983 -10.68356 -10.29179 -10.22617 -9.63918 -9.19510 -9.05694 -8.87241 -8.69406 -8.46732 -8.30417 -7.82296 -6.10757 -4.16335 1.34050 1.45025 2.85000 3.06784 3.26549 3.33061 3.34143 3.47762 3.82461 4.17044 4.41335 4.44499 4.50942 4.63358 4.78855 4.88210 4.98414 5.00555 5.10578 5.18000 5.22561 5.22703 5.30453 5.36557 5.45684 5.52501 5.64751 5.66496 5.69549 5.75531 5.90076 5.99309 6.05911 6.08493 6.33829 6.46071 6.52911 6.61040 6.85316 7.01925 7.02459 7.17723 7.52626 7.61895 7.65727 7.73042 7.91844 8.12044 8.44251 8.75486 8.85226 9.23667 9.50031 10.97693 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.003112 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.920704 B = 8993.837592 C =10401.817375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.267 3.733 3 H 0.053 0.947 4 C -0.535 4.535 5 H 0.060 0.940 6 C 0.068 3.932 7 N -0.880 5.880 8 Si 0.897 3.103 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.711 5.711 13 C 0.496 3.504 14 O -0.533 6.533 15 C 0.116 3.884 16 H 0.093 0.907 17 C -0.124 4.124 18 C -0.133 4.133 19 C 0.101 3.899 20 N -0.606 5.606 21 C 0.535 3.465 22 O -0.508 6.508 23 C -0.094 4.094 24 C -0.064 4.064 25 C -0.100 4.100 26 C -0.119 4.119 27 C -0.123 4.123 28 C -0.123 4.123 29 C -0.107 4.107 30 H 0.027 0.973 31 H 0.020 0.980 32 H 0.070 0.930 33 H 0.264 0.736 34 H 0.386 0.614 35 H 0.083 0.917 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.076 0.924 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.121 0.879 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.119 0.881 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.018 -0.970 21.920 22.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.165 3.835 3 H 0.071 0.929 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.517 5.517 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.360 5.360 13 C 0.279 3.721 14 O -0.410 6.410 15 C 0.009 3.991 16 H 0.111 0.889 17 C -0.163 4.163 18 C -0.171 4.171 19 C -0.022 4.022 20 N -0.342 5.342 21 C 0.323 3.677 22 O -0.381 6.381 23 C -0.134 4.134 24 C -0.064 4.064 25 C -0.118 4.118 26 C -0.137 4.137 27 C -0.141 4.141 28 C -0.141 4.141 29 C -0.125 4.125 30 H 0.046 0.954 31 H 0.040 0.960 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.218 0.782 35 H 0.102 0.898 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.139 0.861 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.137 0.863 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.039 0.033 21.568 21.943 hybrid contribution 0.246 -1.017 -1.077 1.501 sum 4.284 -0.983 20.492 20.958 Atomic orbital electron populations 1.21997 0.98960 0.98538 1.00446 1.18688 0.90497 0.94361 0.79954 0.92936 1.21172 1.37131 1.08577 0.90492 0.92135 1.24894 0.95035 0.94616 0.99009 1.69987 1.43841 1.13758 1.24143 0.86540 0.78685 0.79958 0.82358 1.20439 1.21207 1.19927 1.46441 1.65740 1.13304 1.10481 1.20481 0.79040 0.87943 0.84621 1.90657 1.49772 1.16013 1.84527 1.21549 0.98550 0.92136 0.86908 0.88932 1.22751 0.91690 0.98612 1.03225 1.22853 0.97992 0.99235 0.96994 1.22332 0.81160 1.01727 0.96975 1.48200 1.08499 1.45126 1.32348 1.19996 0.83529 0.80155 0.84023 1.90769 1.23921 1.63323 1.60072 1.20624 0.96728 0.98834 0.97239 1.19287 0.95463 0.94950 0.96727 1.21046 0.96947 0.95359 0.98408 1.21114 0.94440 1.00243 0.97885 1.21117 0.99481 0.96056 0.97438 1.21053 0.96507 0.96063 1.00437 1.20930 0.94531 0.99133 0.97890 0.95402 0.96045 0.91078 0.92598 0.78214 0.89795 0.88869 0.90100 0.89571 0.90597 0.91222 0.88389 0.88129 0.86071 0.86084 0.86315 0.86269 0.86443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.70 9.36 37.16 0.35 -3.36 16 2 C 0.27 7.04 2.42 -69.08 -0.17 6.88 16 3 H 0.05 1.62 7.52 -51.93 -0.39 1.23 16 4 C -0.54 -14.42 8.66 -34.44 -0.30 -14.72 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.87 5.17 -17.82 -0.09 1.78 16 7 N -0.88 -25.61 12.16 55.43 0.67 -24.94 16 8 Si 0.90 20.86 29.55 -169.99 -5.02 15.84 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.71 -15.33 4.75 -54.93 -0.26 -15.59 16 13 C 0.50 10.47 6.68 -10.99 -0.07 10.40 16 14 O -0.53 -13.67 14.51 -11.44 -0.17 -13.84 16 15 C 0.12 1.78 3.28 -68.10 -0.22 1.56 16 16 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 17 C -0.12 -1.37 6.47 -24.68 -0.16 -1.53 16 18 C -0.13 -1.27 7.10 -24.37 -0.17 -1.45 16 19 C 0.10 0.96 6.69 -2.51 -0.02 0.94 16 20 N -0.61 -8.71 2.88 -164.30 -0.47 -9.18 16 21 C 0.54 8.78 6.99 -10.99 -0.08 8.70 16 22 O -0.51 -10.95 15.10 -11.44 -0.17 -11.13 16 23 C -0.09 -1.11 4.84 -29.04 -0.14 -1.26 16 24 C -0.06 -0.85 4.37 -104.62 -0.46 -1.31 16 25 C -0.10 -1.38 9.70 -39.58 -0.38 -1.76 16 26 C -0.12 -1.49 10.05 -39.59 -0.40 -1.89 16 27 C -0.12 -1.41 10.05 -39.58 -0.40 -1.81 16 28 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 29 C -0.11 -1.31 9.70 -39.58 -0.38 -1.69 16 30 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.99 6.83 -51.93 -0.35 1.63 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.39 7.09 8.37 -40.82 -0.34 6.74 16 35 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.13 7.46 -51.93 -0.39 0.74 16 37 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.62 7.48 -51.93 -0.39 0.23 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.10 0.83 8.09 -51.93 -0.42 0.41 16 42 H 0.10 1.04 7.79 -51.93 -0.40 0.63 16 43 H 0.12 1.63 8.06 -52.49 -0.42 1.20 16 44 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 45 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 46 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 47 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -36.88 388.72 -10.36 -47.24 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: -7.30 Total: 8.04 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: -3.49 Total: -2.31 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.06 Total: -49.71 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.34 Total: -24.97 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -36.88 -10.36 -47.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194629371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.900 kcal (2) G-P(sol) polarization free energy of solvation -36.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds