Wall clock time and date at job start Tue Mar 31 2020 15:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.46942 * 2 1 4 4 C 1.50704 * 109.47195 * 239.99678 * 2 1 3 5 5 H 1.08000 * 119.99913 * 245.46231 * 4 2 1 6 6 C 1.37875 * 119.99522 * 65.46447 * 4 2 1 7 7 N 1.31507 * 120.00561 * 9.55797 * 6 4 2 8 8 Si 1.86809 * 119.99683 * 189.55794 * 6 4 2 9 9 H 1.48496 * 109.47074 * 84.99438 * 8 6 4 10 10 H 1.48500 * 109.46990 * 204.99664 * 8 6 4 11 11 H 1.48499 * 109.46568 * 324.99230 * 8 6 4 12 12 N 1.46503 * 109.46744 * 119.99823 * 2 1 3 13 13 C 1.34767 * 120.00162 * 275.00084 * 12 2 1 14 14 O 1.21284 * 120.00196 * 0.02562 * 13 12 2 15 15 C 1.50704 * 120.00058 * 179.72699 * 13 12 2 16 16 H 1.09001 * 109.87051 * 300.97246 * 15 13 12 17 17 C 1.54317 * 109.88213 * 61.98953 * 15 13 12 18 18 C 1.55553 * 102.76107 * 97.25754 * 17 15 13 19 19 C 1.54910 * 101.59585 * 35.53322 * 18 17 15 20 20 N 1.47028 * 109.88176 * 179.97438 * 15 13 12 21 21 C 1.34766 * 125.65107 * 59.55918 * 20 15 13 22 22 O 1.21284 * 120.00111 * 359.97438 * 21 20 15 23 23 C 1.50699 * 120.00254 * 180.02562 * 21 20 15 24 24 C 1.50693 * 109.47650 * 179.97438 * 23 21 20 25 25 C 1.38245 * 119.99817 * 269.72658 * 24 23 21 26 26 C 1.38230 * 119.99856 * 179.76264 * 25 24 23 27 27 C 1.38235 * 120.00138 * 0.48680 * 26 25 24 28 28 C 1.38238 * 119.99914 * 359.78730 * 27 26 25 29 29 C 1.38234 * 120.00194 * 359.95645 * 28 27 26 30 30 H 1.09002 * 109.46782 * 183.67572 * 1 2 3 31 31 H 1.08993 * 109.47096 * 303.67978 * 1 2 3 32 32 H 1.09002 * 109.46390 * 63.68167 * 1 2 3 33 33 H 0.96997 * 120.00797 * 179.97438 * 7 6 4 34 34 H 0.97008 * 119.99975 * 94.99814 * 12 2 1 35 35 H 1.09001 * 110.72059 * 215.58383 * 17 15 13 36 36 H 1.09001 * 110.72331 * 338.86389 * 17 15 13 37 37 H 1.09001 * 111.02685 * 277.44472 * 18 17 15 38 38 H 1.08993 * 111.00165 * 153.61186 * 18 17 15 39 39 H 1.09003 * 110.36663 * 204.12530 * 19 18 17 40 40 H 1.08991 * 110.46592 * 81.84101 * 19 18 17 41 41 H 1.09005 * 109.46642 * 299.99755 * 23 21 20 42 42 H 1.09007 * 109.47338 * 59.99306 * 23 21 20 43 43 H 1.07998 * 119.99434 * 359.97438 * 25 24 23 44 44 H 1.08002 * 119.99798 * 180.25090 * 26 25 24 45 45 H 1.07998 * 120.00345 * 179.76760 * 27 26 25 46 46 H 1.07998 * 119.99758 * 179.97438 * 28 27 26 47 47 H 1.07995 * 120.00018 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5786 -1.6371 -1.1337 6 6 1.7947 -0.1774 -2.4795 7 7 1.2995 1.0355 -2.5935 8 14 2.1761 -1.1782 -4.0101 9 1 1.0241 -2.0610 -4.3241 10 1 2.4229 -0.2615 -5.1521 11 1 3.3846 -2.0073 -3.7708 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0183 2.3571 14 8 1.8581 1.1584 2.4117 15 6 2.6434 -0.7302 3.5892 16 1 1.9807 -1.5618 3.8289 17 6 4.0761 -1.2523 3.3522 18 6 4.9566 -0.1457 4.0002 19 6 4.0870 0.2747 5.2113 20 7 2.6981 0.2073 4.7205 21 6 1.6522 0.8909 5.2254 22 8 0.5489 0.7568 4.7401 23 6 1.8538 1.8228 6.3924 24 6 0.5382 2.4589 6.7605 25 6 0.1606 3.6536 6.1763 26 6 -1.0483 4.2345 6.5103 27 6 -1.8753 3.6261 7.4360 28 6 -1.4951 2.4344 8.0244 29 6 -0.2885 1.8507 7.6865 30 1 -0.3633 -1.0256 0.0659 31 1 -0.3633 0.5699 0.8551 32 1 -0.3632 0.4557 -0.9212 33 1 1.1326 1.4107 -3.4723 34 1 2.2490 -1.6319 1.1527 35 1 4.2259 -2.2085 3.8534 36 1 4.2839 -1.3379 2.2856 37 1 5.1022 0.6894 3.3151 38 1 5.9138 -0.5506 4.3285 39 1 4.3314 1.2914 5.5191 40 1 4.2298 -0.4169 6.0414 41 1 2.2370 1.2608 7.2442 42 1 2.5683 2.5992 6.1183 43 1 0.8088 4.1311 5.4564 44 1 -1.3452 5.1658 6.0508 45 1 -2.8181 4.0819 7.6998 46 1 -2.1410 1.9593 8.7480 47 1 0.0087 0.9199 8.1466 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194629371.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:04 Heat of formation + Delta-G solvation = -70.058346 kcal Electronic energy + Delta-G solvation = -28505.512935 eV Core-core repulsion = 24651.903206 eV Total energy + Delta-G solvation = -3853.609729 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.69638 -40.40100 -39.42866 -38.07199 -36.62496 -34.38861 -33.93765 -32.55839 -31.78412 -31.53026 -29.88226 -28.39902 -27.34694 -25.04788 -23.64992 -23.49512 -22.62542 -22.23002 -21.06573 -20.26107 -19.02437 -18.14746 -17.80806 -17.65201 -17.22244 -16.67394 -16.48412 -16.18410 -15.91604 -15.64188 -15.42399 -15.03229 -14.68301 -14.51786 -14.30456 -14.27112 -13.90159 -13.86303 -13.80304 -13.56130 -13.29997 -13.06592 -12.94578 -12.90616 -12.72564 -12.43521 -12.23112 -12.21952 -12.14383 -11.96247 -11.90669 -11.87525 -11.20094 -10.91880 -10.74532 -10.59488 -9.81526 -9.75441 -9.64676 -9.59543 -8.22077 -6.36784 0.39921 0.50553 1.42782 1.45443 1.54746 1.65674 1.84830 2.01311 2.35969 2.66981 2.90103 3.09821 3.50857 3.62280 3.69546 3.90274 3.96057 4.01121 4.12191 4.14173 4.25506 4.32159 4.37674 4.49855 4.56653 4.63145 4.63589 4.74513 4.76545 4.80833 4.87751 4.95436 4.98659 5.07133 5.10792 5.14433 5.26412 5.31903 5.39493 5.54382 5.55464 5.59155 5.60255 5.66162 5.87382 6.00179 6.11801 6.56058 6.72118 6.96536 7.27298 7.31140 7.59359 8.87510 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014305 B = 0.003112 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.920704 B = 8993.837592 C =10401.817375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.275 3.725 3 H -0.004 1.004 4 C -0.546 4.546 5 H 0.079 0.921 6 C 0.013 3.987 7 N -0.922 5.922 8 Si 0.974 3.026 9 H -0.271 1.271 10 H -0.288 1.288 11 H -0.258 1.258 12 N -0.706 5.706 13 C 0.487 3.513 14 O -0.587 6.587 15 C 0.119 3.881 16 H 0.102 0.898 17 C -0.116 4.116 18 C -0.130 4.130 19 C 0.095 3.905 20 N -0.609 5.609 21 C 0.524 3.476 22 O -0.574 6.574 23 C -0.085 4.085 24 C -0.082 4.082 25 C -0.130 4.130 26 C -0.135 4.135 27 C -0.130 4.130 28 C -0.127 4.127 29 C -0.116 4.116 30 H 0.046 0.954 31 H 0.001 0.999 32 H 0.049 0.951 33 H 0.265 0.735 34 H 0.404 0.596 35 H 0.128 0.872 36 H 0.079 0.921 37 H 0.048 0.952 38 H 0.128 0.872 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.139 0.861 42 H 0.112 0.888 43 H 0.109 0.891 44 H 0.132 0.868 45 H 0.144 0.856 46 H 0.147 0.853 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.939 -3.839 23.849 25.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.172 3.828 3 H 0.014 0.986 4 C -0.584 4.584 5 H 0.097 0.903 6 C -0.187 4.187 7 N -0.560 5.560 8 Si 0.798 3.202 9 H -0.197 1.197 10 H -0.214 1.214 11 H -0.181 1.181 12 N -0.356 5.356 13 C 0.273 3.727 14 O -0.467 6.467 15 C 0.011 3.989 16 H 0.119 0.881 17 C -0.154 4.154 18 C -0.168 4.168 19 C -0.026 4.026 20 N -0.343 5.343 21 C 0.314 3.686 22 O -0.452 6.452 23 C -0.124 4.124 24 C -0.082 4.082 25 C -0.148 4.148 26 C -0.153 4.153 27 C -0.147 4.147 28 C -0.145 4.145 29 C -0.134 4.134 30 H 0.065 0.935 31 H 0.020 0.980 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.239 0.761 35 H 0.146 0.854 36 H 0.098 0.902 37 H 0.067 0.933 38 H 0.147 0.853 39 H 0.107 0.893 40 H 0.130 0.870 41 H 0.157 0.843 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.150 0.850 45 H 0.161 0.839 46 H 0.165 0.835 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 6.033 -2.882 23.539 24.470 hybrid contribution -0.370 -0.064 -1.649 1.691 sum 5.663 -2.946 21.890 22.802 Atomic orbital electron populations 1.21824 0.99291 0.98930 0.98358 1.18236 0.90175 0.92123 0.82304 0.98601 1.21499 1.37193 1.09041 0.90626 0.90333 1.25894 0.94687 0.95483 1.02653 1.70157 1.45119 1.15757 1.24961 0.85336 0.79133 0.78202 0.77544 1.19667 1.21396 1.18145 1.46191 1.65727 1.14045 1.09654 1.21676 0.77554 0.87558 0.85928 1.90629 1.51822 1.18729 1.85523 1.21638 1.01379 0.91723 0.84168 0.88065 1.22835 0.88485 1.00869 1.03191 1.22905 0.99726 0.97807 0.96312 1.22751 0.78000 1.03925 0.97914 1.48447 1.10249 1.44169 1.31441 1.20849 0.83014 0.80107 0.84596 1.90729 1.26622 1.65531 1.62321 1.20668 0.96492 0.98473 0.96752 1.19561 0.96634 0.94898 0.97142 1.21204 0.97832 0.96556 0.99179 1.21382 0.94411 1.00990 0.98530 1.21472 1.00181 0.96258 0.96827 1.21471 0.96608 0.95902 1.00531 1.21268 0.94692 0.99812 0.97662 0.93505 0.97972 0.93224 0.92604 0.76077 0.85397 0.90243 0.93270 0.85350 0.89284 0.86967 0.84268 0.86971 0.87248 0.85039 0.83851 0.83515 0.84358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.92 9.36 71.98 0.67 -6.25 16 2 C 0.28 15.22 2.42 44.25 0.11 15.32 16 3 H 0.00 -0.26 7.52 -2.39 -0.02 -0.28 16 4 C -0.55 -29.69 8.66 25.60 0.22 -29.47 16 5 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 6 C 0.01 0.72 5.17 84.66 0.44 1.15 16 7 N -0.92 -55.55 12.16 21.45 0.26 -55.29 16 8 Si 0.97 42.67 29.55 68.60 2.03 44.70 16 9 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 10 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 11 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 12 N -0.71 -31.28 4.75 -446.08 -2.12 -33.40 16 13 C 0.49 21.29 6.68 87.66 0.59 21.88 16 14 O -0.59 -32.15 14.51 13.21 0.19 -31.95 16 15 C 0.12 3.53 3.28 44.59 0.15 3.67 16 16 H 0.10 2.84 8.14 -2.39 -0.02 2.82 16 17 C -0.12 -2.20 6.47 31.92 0.21 -2.00 16 18 C -0.13 -2.08 7.10 32.13 0.23 -1.85 16 19 C 0.09 1.46 6.69 86.85 0.58 2.04 16 20 N -0.61 -16.72 2.88 -792.12 -2.28 -18.99 16 21 C 0.52 17.22 6.99 87.66 0.61 17.84 16 22 O -0.57 -25.85 15.10 13.21 0.20 -25.65 16 23 C -0.08 -1.91 4.84 29.10 0.14 -1.77 16 24 C -0.08 -2.20 4.37 -19.87 -0.09 -2.29 16 25 C -0.13 -3.80 9.70 22.27 0.22 -3.58 16 26 C -0.14 -3.52 10.05 22.27 0.22 -3.30 16 27 C -0.13 -2.92 10.05 22.27 0.22 -2.69 16 28 C -0.13 -2.75 10.05 22.27 0.22 -2.52 16 29 C -0.12 -2.73 9.70 22.27 0.22 -2.51 16 30 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 32 H 0.05 2.92 6.83 -2.39 -0.02 2.90 16 33 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 34 H 0.40 14.70 8.37 -92.70 -0.78 13.93 16 35 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.08 1.77 7.46 -2.39 -0.02 1.75 16 37 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.13 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 1.17 7.48 -2.39 -0.02 1.15 16 40 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 41 H 0.14 1.90 8.09 -2.38 -0.02 1.88 16 42 H 0.11 2.23 7.79 -2.38 -0.02 2.21 16 43 H 0.11 3.28 8.06 -2.91 -0.02 3.25 16 44 H 0.13 2.94 8.06 -2.91 -0.02 2.91 16 45 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 46 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 47 H 0.14 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -88.40 388.72 3.43 -84.97 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.19 Total: 31.96 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: 4.96 Total: 3.67 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -4.14 Total: -107.69 kcal Atomic # 8 Polarization: -58.00 SS G_CDS: 0.39 Total: -57.61 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -88.40 3.43 -84.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194629371.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.910 kcal (2) G-P(sol) polarization free energy of solvation -88.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds