Wall clock time and date at job start Tue Mar 31 2020 15:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21279 * 120.00042 * 2 1 4 4 N 1.34783 * 119.99931 * 179.97438 * 2 1 3 5 5 C 1.47232 * 121.33690 * 354.39066 * 4 2 1 6 6 C 1.52785 * 107.90264 * 115.49360 * 5 4 2 7 7 C 1.50601 * 110.86054 * 47.48721 * 6 5 4 8 8 C 1.38980 * 117.62488 * 159.93675 * 7 6 5 9 9 C 1.37911 * 120.57799 * 179.54144 * 8 7 6 10 10 C 1.38267 * 119.82819 * 359.93187 * 9 8 7 11 11 C 1.37957 * 119.71725 * 0.23028 * 10 9 8 12 12 C 1.37674 * 122.85396 * 339.83844 * 7 6 5 13 13 C 1.46688 * 121.33555 * 174.10672 * 4 2 1 14 14 H 1.08998 * 109.43626 * 104.60106 * 13 4 2 15 15 C 1.53003 * 109.43416 * 344.73000 * 13 4 2 16 16 C 1.50702 * 109.47107 * 82.00671 * 15 13 4 17 17 O 1.21277 * 119.99951 * 5.85858 * 16 15 13 18 18 N 1.34773 * 119.99902 * 185.85881 * 16 15 13 19 19 C 1.46494 * 119.99861 * 180.02562 * 18 16 15 20 20 H 1.08999 * 109.47671 * 324.99604 * 19 18 16 21 21 C 1.53001 * 109.47568 * 84.99967 * 19 18 16 22 22 C 1.50703 * 109.47355 * 204.99611 * 19 18 16 23 23 H 1.08006 * 119.99906 * 0.02562 * 22 19 18 24 24 C 1.37879 * 120.00400 * 179.97438 * 22 19 18 25 25 N 1.31515 * 119.99902 * 0.02562 * 24 22 19 26 26 Si 1.86795 * 120.00019 * 179.97438 * 24 22 19 27 27 H 1.48506 * 109.47080 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46865 * 120.00262 * 26 24 22 29 29 H 1.48494 * 109.47482 * 240.00354 * 26 24 22 30 30 H 1.09008 * 109.46819 * 174.49190 * 1 2 3 31 31 H 1.08992 * 109.47381 * 294.49394 * 1 2 3 32 32 H 1.08998 * 109.47180 * 54.49725 * 1 2 3 33 33 H 1.09006 * 109.76954 * 235.09041 * 5 4 2 34 34 H 1.08995 * 109.77190 * 355.83252 * 5 4 2 35 35 H 1.09006 * 109.19882 * 167.84630 * 6 5 4 36 36 H 1.09005 * 109.20100 * 287.13130 * 6 5 4 37 37 H 1.07994 * 119.70801 * 359.56422 * 8 7 6 38 38 H 1.08004 * 120.08301 * 179.97438 * 9 8 7 39 39 H 1.08000 * 120.13637 * 180.24971 * 10 9 8 40 40 H 1.07996 * 119.74296 * 180.02562 * 11 10 9 41 41 H 1.09005 * 109.46905 * 202.00793 * 15 13 4 42 42 H 1.08998 * 109.47128 * 322.00655 * 15 13 4 43 43 H 0.97001 * 120.00140 * 359.97438 * 18 16 15 44 44 H 1.09001 * 109.47472 * 59.99699 * 21 19 18 45 45 H 1.08996 * 109.47466 * 179.97438 * 21 19 18 46 46 H 1.09001 * 109.46980 * 299.99953 * 21 19 18 47 47 H 0.96994 * 120.00151 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4799 -2.4561 0.1240 6 6 1.6929 -3.2329 -1.1743 7 6 3.1437 -3.2152 -1.5779 8 6 3.5786 -4.1953 -2.4621 9 6 4.8925 -4.2305 -2.8796 10 6 5.7867 -3.2827 -2.4171 11 6 5.3585 -2.3107 -1.5367 12 6 4.0374 -2.2776 -1.1113 13 6 3.6416 -1.2048 -0.1281 14 1 4.0858 -1.4213 0.8434 15 6 4.1439 0.1520 -0.6257 16 6 4.2515 1.1049 0.5369 17 8 4.0586 0.7077 1.6664 18 7 4.5622 2.3985 0.3213 19 6 4.6674 3.3247 1.4514 20 1 3.9315 3.0577 2.2098 21 6 6.0722 3.2396 2.0517 22 6 4.4094 4.7308 0.9744 23 1 4.1887 4.9159 -0.0666 24 6 4.4540 5.7808 1.8669 25 7 4.7223 5.5553 3.1345 26 14 4.1350 7.5236 1.2753 27 1 3.8594 7.5084 -0.1839 28 1 2.9624 8.0834 1.9943 29 1 5.3288 8.3644 1.5453 30 1 -0.3633 -1.0230 -0.0987 31 1 -0.3634 0.4260 0.9351 32 1 -0.3633 0.5968 -0.8366 33 1 1.8894 -3.0197 0.9624 34 1 0.4152 -2.2832 0.2809 35 1 1.3731 -4.2651 -1.0310 36 1 1.0952 -2.7798 -1.9653 37 1 2.8814 -4.9356 -2.8257 38 1 5.2219 -4.9960 -3.5667 39 1 6.8158 -3.3032 -2.7439 40 1 6.0565 -1.5700 -1.1755 41 1 5.1239 0.0297 -1.0872 42 1 3.4441 0.5517 -1.3595 43 1 4.7169 2.7162 -0.5821 44 1 6.8082 3.5068 1.2933 45 1 6.1505 3.9291 2.8922 46 1 6.2588 2.2227 2.3968 47 1 4.7540 6.2940 3.7623 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194659863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:20 Heat of formation + Delta-G solvation = -27.151888 kcal Electronic energy + Delta-G solvation = -29281.534041 eV Core-core repulsion = 25429.784876 eV Total energy + Delta-G solvation = -3851.749166 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.02623 -39.12912 -38.07903 -36.15358 -34.62613 -33.66811 -32.24791 -32.06000 -30.21953 -29.28351 -29.06318 -27.49768 -25.09589 -24.77691 -23.75445 -22.13375 -21.07702 -20.60105 -19.06895 -18.59586 -17.41949 -16.97139 -16.63496 -16.07766 -15.88438 -15.32055 -15.01536 -14.66755 -14.58746 -14.45085 -14.04047 -13.94279 -13.50526 -13.38167 -13.17820 -12.90203 -12.84071 -12.45590 -12.27881 -12.16030 -11.94101 -11.84310 -11.71926 -11.51707 -11.17052 -11.10577 -10.96096 -10.89282 -10.73138 -10.45700 -10.13551 -10.07639 -9.26886 -9.03299 -8.83660 -8.80865 -8.61775 -8.43380 -8.31821 -7.52385 -5.96585 -4.03426 1.17266 1.19783 2.80478 2.97140 3.32581 3.39596 3.43699 3.55332 3.95728 4.32512 4.39229 4.43530 4.54238 4.66005 4.81376 4.85945 4.92248 4.95956 5.03029 5.17632 5.22623 5.35360 5.35896 5.39734 5.43577 5.49445 5.56561 5.66105 5.72100 5.84191 5.88831 5.92427 6.08485 6.17257 6.28418 6.35231 6.38244 6.67574 6.82088 7.00887 7.15084 7.36376 7.50339 7.73439 7.86110 7.92392 8.16398 8.35057 8.40746 8.97645 9.07935 9.52287 9.68865 11.09727 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018129 B = 0.003282 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.084881 B = 8528.110978 C = 9388.237958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.512 3.488 3 O -0.505 6.505 4 N -0.609 5.609 5 C 0.105 3.895 6 C -0.097 4.097 7 C -0.073 4.073 8 C -0.121 4.121 9 C -0.122 4.122 10 C -0.120 4.120 11 C -0.111 4.111 12 C -0.083 4.083 13 C 0.201 3.799 14 H 0.100 0.900 15 C -0.135 4.135 16 C 0.546 3.454 17 O -0.575 6.575 18 N -0.709 5.709 19 C 0.270 3.730 20 H 0.045 0.955 21 C -0.146 4.146 22 C -0.523 4.523 23 H 0.059 0.941 24 C 0.063 3.937 25 N -0.887 5.887 26 Si 0.899 3.101 27 H -0.273 1.273 28 H -0.284 1.284 29 H -0.284 1.284 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.128 0.872 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.382 0.618 44 H 0.023 0.977 45 H 0.087 0.913 46 H 0.012 0.988 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.629 -21.907 -12.262 25.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.301 3.699 3 O -0.380 6.380 4 N -0.344 5.344 5 C -0.018 4.018 6 C -0.135 4.135 7 C -0.073 4.073 8 C -0.139 4.139 9 C -0.140 4.140 10 C -0.138 4.138 11 C -0.129 4.129 12 C -0.084 4.084 13 C 0.097 3.903 14 H 0.118 0.882 15 C -0.176 4.176 16 C 0.333 3.667 17 O -0.457 6.457 18 N -0.356 5.356 19 C 0.168 3.832 20 H 0.062 0.938 21 C -0.204 4.204 22 C -0.561 4.561 23 H 0.077 0.923 24 C -0.139 4.139 25 N -0.525 5.525 26 Si 0.727 3.273 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.210 1.210 30 H 0.095 0.905 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.145 0.855 41 H 0.097 0.903 42 H 0.116 0.884 43 H 0.214 0.786 44 H 0.042 0.958 45 H 0.106 0.894 46 H 0.031 0.969 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.447 -21.446 -11.259 24.827 hybrid contribution -0.074 0.982 -0.818 1.280 sum -5.521 -20.465 -12.077 24.396 Atomic orbital electron populations 1.21986 0.92100 1.03805 1.05452 1.20700 0.90412 0.82928 0.75897 1.90711 1.68537 1.31009 1.47757 1.47983 1.06537 1.06054 1.73835 1.21805 0.98441 0.84257 0.97310 1.20853 0.93066 1.01306 0.98246 1.19437 0.95194 0.95069 0.97627 1.21124 0.96138 0.98543 0.98135 1.21057 0.93656 0.99075 1.00248 1.21083 0.99724 0.95144 0.97824 1.21175 0.95196 0.98853 0.97680 1.19915 0.93887 0.96556 0.98010 1.19748 0.80247 0.92646 0.97655 0.88224 1.22083 1.01968 0.93794 0.99725 1.19491 0.74846 0.83298 0.89096 1.90564 1.53163 1.77530 1.24482 1.46179 1.69738 1.08598 1.11074 1.18562 0.93762 0.86392 0.84473 0.93756 1.22080 0.98208 0.98497 1.01662 1.21319 1.48275 0.91227 0.95305 0.92257 1.24889 0.95101 0.99140 0.94809 1.69928 1.48784 1.31538 1.02294 0.86435 0.77757 0.84311 0.78817 1.19808 1.21020 1.21020 0.90477 0.88685 0.88890 0.90565 0.88537 0.89687 0.90174 0.86238 0.86182 0.85892 0.85459 0.90268 0.88432 0.78636 0.95764 0.89427 0.96867 0.92912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.84 10.05 36.00 0.36 -1.48 16 2 C 0.51 7.93 7.35 -10.98 -0.08 7.85 16 3 O -0.51 -10.40 10.89 -14.86 -0.16 -10.56 16 4 N -0.61 -8.18 2.93 -166.77 -0.49 -8.67 16 5 C 0.10 0.93 6.28 -3.75 -0.02 0.91 16 6 C -0.10 -0.74 5.87 -28.04 -0.16 -0.90 16 7 C -0.07 -0.74 5.76 -104.60 -0.60 -1.34 16 8 C -0.12 -1.07 9.59 -39.43 -0.38 -1.45 16 9 C -0.12 -1.07 10.04 -39.69 -0.40 -1.47 16 10 C -0.12 -1.15 10.05 -39.67 -0.40 -1.54 16 11 C -0.11 -1.25 8.85 -39.46 -0.35 -1.60 16 12 C -0.08 -1.01 5.43 -104.56 -0.57 -1.57 16 13 C 0.20 2.97 2.64 -68.93 -0.18 2.78 16 14 H 0.10 1.71 7.16 -51.93 -0.37 1.33 16 15 C -0.14 -2.26 4.71 -27.88 -0.13 -2.39 16 16 C 0.55 12.14 4.73 -10.99 -0.05 12.09 16 17 O -0.58 -14.86 14.73 -14.86 -0.22 -15.08 16 18 N -0.71 -16.78 5.05 -54.94 -0.28 -17.05 16 19 C 0.27 7.54 2.56 -69.08 -0.18 7.36 16 20 H 0.04 1.44 7.58 -51.93 -0.39 1.05 16 21 C -0.15 -3.91 9.26 37.16 0.34 -3.57 16 22 C -0.52 -15.02 8.73 -34.44 -0.30 -15.32 16 23 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 24 C 0.06 1.80 5.30 -17.82 -0.09 1.70 16 25 N -0.89 -26.47 11.32 55.43 0.63 -25.84 16 26 Si 0.90 21.87 29.54 -169.99 -5.02 16.85 16 27 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 29 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 30 H 0.08 0.54 5.34 -51.92 -0.28 0.26 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 0.62 5.30 -51.93 -0.28 0.34 16 35 H 0.08 0.45 8.10 -51.93 -0.42 0.03 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.12 0.77 8.05 -52.49 -0.42 0.35 16 38 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 39 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.13 1.40 6.71 -52.49 -0.35 1.05 16 41 H 0.08 1.14 5.96 -51.93 -0.31 0.83 16 42 H 0.10 1.66 6.38 -51.93 -0.33 1.33 16 43 H 0.38 8.15 8.54 -40.82 -0.35 7.81 16 44 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 45 H 0.09 2.52 6.07 -51.93 -0.32 2.21 16 46 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 369.18 15.07 5.56 5.56 Total: -1.00 -36.55 369.18 -9.91 -46.46 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: -6.74 Total: 8.27 kcal Atomic # 6 Polarization: 3.25 SS G_CDS: -3.20 Total: 0.06 kcal Atomic # 7 Polarization: -51.42 SS G_CDS: -0.14 Total: -51.56 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: -0.38 Total: -25.64 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.55 -9.91 -46.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194659863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.311 kcal (2) G-P(sol) polarization free energy of solvation -36.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds