Wall clock time and date at job start Tue Mar 31 2020 15:49:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21279 * 120.00042 * 2 1 4 4 N 1.34783 * 119.99931 * 179.97438 * 2 1 3 5 5 C 1.47232 * 121.33690 * 354.39066 * 4 2 1 6 6 C 1.52785 * 107.90264 * 115.49360 * 5 4 2 7 7 C 1.50601 * 110.86054 * 47.48721 * 6 5 4 8 8 C 1.38980 * 117.62488 * 159.93675 * 7 6 5 9 9 C 1.37911 * 120.57799 * 179.54144 * 8 7 6 10 10 C 1.38267 * 119.82819 * 359.93187 * 9 8 7 11 11 C 1.37957 * 119.71725 * 0.23028 * 10 9 8 12 12 C 1.37674 * 122.85396 * 339.83844 * 7 6 5 13 13 C 1.46688 * 121.33555 * 174.10672 * 4 2 1 14 14 H 1.08998 * 109.43626 * 104.60106 * 13 4 2 15 15 C 1.53003 * 109.43416 * 344.73000 * 13 4 2 16 16 C 1.50702 * 109.47107 * 82.00671 * 15 13 4 17 17 O 1.21277 * 119.99951 * 5.85858 * 16 15 13 18 18 N 1.34773 * 119.99902 * 185.85881 * 16 15 13 19 19 C 1.46494 * 119.99861 * 180.02562 * 18 16 15 20 20 H 1.08999 * 109.47671 * 324.99604 * 19 18 16 21 21 C 1.53001 * 109.47568 * 84.99967 * 19 18 16 22 22 C 1.50703 * 109.47355 * 204.99611 * 19 18 16 23 23 H 1.08006 * 119.99906 * 0.02562 * 22 19 18 24 24 C 1.37879 * 120.00400 * 179.97438 * 22 19 18 25 25 N 1.31515 * 119.99902 * 0.02562 * 24 22 19 26 26 Si 1.86795 * 120.00019 * 179.97438 * 24 22 19 27 27 H 1.48506 * 109.47080 * 0.02562 * 26 24 22 28 28 H 1.48500 * 109.46865 * 120.00262 * 26 24 22 29 29 H 1.48494 * 109.47482 * 240.00354 * 26 24 22 30 30 H 1.09008 * 109.46819 * 174.49190 * 1 2 3 31 31 H 1.08992 * 109.47381 * 294.49394 * 1 2 3 32 32 H 1.08998 * 109.47180 * 54.49725 * 1 2 3 33 33 H 1.09006 * 109.76954 * 235.09041 * 5 4 2 34 34 H 1.08995 * 109.77190 * 355.83252 * 5 4 2 35 35 H 1.09006 * 109.19882 * 167.84630 * 6 5 4 36 36 H 1.09005 * 109.20100 * 287.13130 * 6 5 4 37 37 H 1.07994 * 119.70801 * 359.56422 * 8 7 6 38 38 H 1.08004 * 120.08301 * 179.97438 * 9 8 7 39 39 H 1.08000 * 120.13637 * 180.24971 * 10 9 8 40 40 H 1.07996 * 119.74296 * 180.02562 * 11 10 9 41 41 H 1.09005 * 109.46905 * 202.00793 * 15 13 4 42 42 H 1.08998 * 109.47128 * 322.00655 * 15 13 4 43 43 H 0.97001 * 120.00140 * 359.97438 * 18 16 15 44 44 H 1.09001 * 109.47472 * 59.99699 * 21 19 18 45 45 H 1.08996 * 109.47466 * 179.97438 * 21 19 18 46 46 H 1.09001 * 109.46980 * 299.99953 * 21 19 18 47 47 H 0.96994 * 120.00151 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1673 0.0005 5 6 1.4799 -2.4561 0.1240 6 6 1.6929 -3.2329 -1.1743 7 6 3.1437 -3.2152 -1.5779 8 6 3.5786 -4.1953 -2.4621 9 6 4.8925 -4.2305 -2.8796 10 6 5.7867 -3.2827 -2.4171 11 6 5.3585 -2.3107 -1.5367 12 6 4.0374 -2.2776 -1.1113 13 6 3.6416 -1.2048 -0.1281 14 1 4.0858 -1.4213 0.8434 15 6 4.1439 0.1520 -0.6257 16 6 4.2515 1.1049 0.5369 17 8 4.0586 0.7077 1.6664 18 7 4.5622 2.3985 0.3213 19 6 4.6674 3.3247 1.4514 20 1 3.9315 3.0577 2.2098 21 6 6.0722 3.2396 2.0517 22 6 4.4094 4.7308 0.9744 23 1 4.1887 4.9159 -0.0666 24 6 4.4540 5.7808 1.8669 25 7 4.7223 5.5553 3.1345 26 14 4.1350 7.5236 1.2753 27 1 3.8594 7.5084 -0.1839 28 1 2.9624 8.0834 1.9943 29 1 5.3288 8.3644 1.5453 30 1 -0.3633 -1.0230 -0.0987 31 1 -0.3634 0.4260 0.9351 32 1 -0.3633 0.5968 -0.8366 33 1 1.8894 -3.0197 0.9624 34 1 0.4152 -2.2832 0.2809 35 1 1.3731 -4.2651 -1.0310 36 1 1.0952 -2.7798 -1.9653 37 1 2.8814 -4.9356 -2.8257 38 1 5.2219 -4.9960 -3.5667 39 1 6.8158 -3.3032 -2.7439 40 1 6.0565 -1.5700 -1.1755 41 1 5.1239 0.0297 -1.0872 42 1 3.4441 0.5517 -1.3595 43 1 4.7169 2.7162 -0.5821 44 1 6.8082 3.5068 1.2933 45 1 6.1505 3.9291 2.8922 46 1 6.2588 2.2227 2.3968 47 1 4.7540 6.2940 3.7623 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194659863.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:19 Heat of formation + Delta-G solvation = -51.030102 kcal Electronic energy + Delta-G solvation = -29282.569479 eV Core-core repulsion = 25429.784876 eV Total energy + Delta-G solvation = -3852.784603 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.11173 -40.20854 -39.72269 -37.15548 -36.63929 -34.78643 -34.21482 -33.11588 -31.36240 -30.71450 -30.08788 -28.83087 -27.34895 -25.81550 -24.59766 -23.36001 -22.29497 -21.92993 -20.92884 -19.67380 -18.95304 -18.31690 -17.65817 -17.56989 -17.08742 -16.73849 -16.63590 -15.98422 -15.66162 -15.55718 -15.49543 -15.16322 -14.80300 -14.45889 -14.38841 -14.09275 -13.92867 -13.79335 -13.63949 -13.51379 -13.29656 -12.98893 -12.92626 -12.89481 -12.77067 -12.62716 -12.53023 -12.30162 -12.22111 -12.13537 -11.85105 -11.65934 -11.08965 -10.72180 -10.59100 -10.30123 -9.80474 -9.57376 -9.53150 -9.47203 -8.17671 -6.34774 0.40589 0.47292 1.40311 1.41482 1.54621 1.61518 1.98131 2.22085 2.38501 2.74304 2.89079 3.11637 3.48766 3.67082 3.79541 3.90276 3.99885 4.14393 4.15999 4.26710 4.32305 4.34207 4.42248 4.45916 4.61393 4.65867 4.70404 4.73238 4.77167 4.79653 4.88930 4.91378 5.02484 5.09275 5.10469 5.11586 5.25163 5.42485 5.45273 5.60419 5.63532 5.65999 5.72679 5.75743 5.99132 6.11328 6.14626 6.47505 6.74381 7.15366 7.24851 7.33407 7.79138 8.89318 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018129 B = 0.003282 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1544.084881 B = 8528.110978 C = 9388.237958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.495 3.505 3 O -0.570 6.570 4 N -0.608 5.608 5 C 0.096 3.904 6 C -0.091 4.091 7 C -0.079 4.079 8 C -0.120 4.120 9 C -0.120 4.120 10 C -0.126 4.126 11 C -0.130 4.130 12 C -0.104 4.104 13 C 0.204 3.796 14 H 0.064 0.936 15 C -0.117 4.117 16 C 0.544 3.456 17 O -0.618 6.618 18 N -0.711 5.711 19 C 0.280 3.720 20 H -0.015 1.015 21 C -0.130 4.130 22 C -0.543 4.543 23 H 0.065 0.935 24 C 0.011 3.989 25 N -0.920 5.920 26 Si 0.976 3.024 27 H -0.263 1.263 28 H -0.281 1.281 29 H -0.273 1.273 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.127 0.873 35 H 0.119 0.881 36 H 0.093 0.907 37 H 0.151 0.849 38 H 0.148 0.852 39 H 0.140 0.860 40 H 0.118 0.882 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.394 0.606 44 H 0.039 0.961 45 H 0.066 0.934 46 H 0.009 0.991 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.944 -23.893 -15.138 29.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.287 3.713 3 O -0.450 6.450 4 N -0.341 5.341 5 C -0.025 4.025 6 C -0.129 4.129 7 C -0.079 4.079 8 C -0.138 4.138 9 C -0.137 4.137 10 C -0.144 4.144 11 C -0.148 4.148 12 C -0.105 4.105 13 C 0.100 3.900 14 H 0.082 0.918 15 C -0.157 4.157 16 C 0.334 3.666 17 O -0.503 6.503 18 N -0.358 5.358 19 C 0.176 3.824 20 H 0.003 0.997 21 C -0.189 4.189 22 C -0.582 4.582 23 H 0.083 0.917 24 C -0.188 4.188 25 N -0.558 5.558 26 Si 0.800 3.200 27 H -0.187 1.187 28 H -0.207 1.207 29 H -0.199 1.199 30 H 0.137 0.863 31 H 0.107 0.893 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.144 0.856 35 H 0.137 0.863 36 H 0.111 0.889 37 H 0.169 0.831 38 H 0.166 0.834 39 H 0.158 0.842 40 H 0.135 0.865 41 H 0.117 0.883 42 H 0.115 0.885 43 H 0.227 0.773 44 H 0.058 0.942 45 H 0.085 0.915 46 H 0.028 0.972 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.772 -23.505 -14.170 28.269 hybrid contribution 0.331 1.460 0.114 1.502 sum -6.441 -22.045 -14.056 26.926 Atomic orbital electron populations 1.21989 0.88155 1.06678 1.05470 1.21684 0.92472 0.82480 0.74711 1.90656 1.70047 1.33299 1.50969 1.48170 1.06163 1.07422 1.72368 1.22184 0.99613 0.82194 0.98489 1.20916 0.91594 1.03012 0.97345 1.19781 0.96205 0.94509 0.97452 1.21486 0.96771 0.98374 0.97137 1.21466 0.93555 0.98909 0.99810 1.21330 1.00980 0.94807 0.97271 1.21238 0.95005 0.99754 0.98805 1.19712 0.94908 0.96985 0.98910 1.19480 0.81285 0.92336 0.96890 0.91802 1.21916 1.03219 0.93497 0.97057 1.20345 0.72928 0.83228 0.90063 1.90523 1.54679 1.78250 1.26810 1.46014 1.70413 1.08884 1.10524 1.18144 0.92403 0.87306 0.84551 0.99734 1.21879 0.98180 0.97631 1.01187 1.21573 1.49108 0.91719 0.95759 0.91702 1.25860 0.94366 1.03843 0.94779 1.70076 1.49048 1.33129 1.03593 0.85246 0.77818 0.78259 0.78681 1.18683 1.20712 1.19874 0.86291 0.89291 0.87974 0.90755 0.85552 0.86326 0.88887 0.83103 0.83404 0.84203 0.86451 0.88297 0.88513 0.77267 0.94154 0.91523 0.97210 0.92570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.25 10.05 71.24 0.72 -2.53 16 2 C 0.50 15.65 7.35 87.66 0.64 16.29 16 3 O -0.57 -24.78 10.89 16.50 0.18 -24.60 16 4 N -0.61 -16.34 2.93 -799.91 -2.35 -18.68 16 5 C 0.10 1.49 6.28 86.17 0.54 2.03 16 6 C -0.09 -1.04 5.87 29.75 0.17 -0.87 16 7 C -0.08 -1.40 5.76 -19.85 -0.11 -1.51 16 8 C -0.12 -1.63 9.59 22.37 0.21 -1.42 16 9 C -0.12 -1.67 10.04 22.20 0.22 -1.45 16 10 C -0.13 -2.18 10.05 22.21 0.22 -1.96 16 11 C -0.13 -2.91 8.85 22.35 0.20 -2.72 16 12 C -0.10 -2.49 5.43 -19.82 -0.11 -2.60 16 13 C 0.20 6.31 2.64 44.24 0.12 6.43 16 14 H 0.06 2.39 7.16 -2.39 -0.02 2.37 16 15 C -0.12 -4.12 4.71 29.85 0.14 -3.98 16 16 C 0.54 25.87 4.73 87.66 0.41 26.28 16 17 O -0.62 -34.49 14.73 16.51 0.24 -34.25 16 18 N -0.71 -35.56 5.05 -446.11 -2.25 -37.81 16 19 C 0.28 16.53 2.56 44.25 0.11 16.64 16 20 H -0.02 -1.07 7.58 -2.39 -0.02 -1.09 16 21 C -0.13 -7.32 9.26 71.98 0.67 -6.65 16 22 C -0.54 -32.20 8.73 25.60 0.22 -31.98 16 23 H 0.06 3.68 7.74 -2.91 -0.02 3.66 16 24 C 0.01 0.63 5.30 84.66 0.45 1.08 16 25 N -0.92 -56.62 11.32 21.45 0.24 -56.38 16 26 Si 0.98 45.29 29.54 68.60 2.03 47.31 16 27 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 28 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 29 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 30 H 0.12 1.25 5.34 -2.38 -0.01 1.23 16 31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.13 1.15 5.30 -2.39 -0.01 1.13 16 35 H 0.12 0.63 8.10 -2.38 -0.02 0.61 16 36 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.15 1.11 8.05 -2.91 -0.02 1.08 16 38 H 0.15 1.23 8.06 -2.91 -0.02 1.20 16 39 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.12 2.72 6.71 -2.91 -0.02 2.70 16 41 H 0.10 2.99 5.96 -2.38 -0.01 2.98 16 42 H 0.10 3.45 6.38 -2.39 -0.02 3.44 16 43 H 0.39 17.55 8.54 -92.71 -0.79 16.76 16 44 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.07 4.02 6.07 -2.39 -0.01 4.01 16 46 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 47 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -86.32 369.18 3.13 -83.18 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: 0.21 Total: 30.13 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 4.84 Total: 11.10 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -4.36 Total: -112.87 kcal Atomic # 8 Polarization: -59.28 SS G_CDS: 0.42 Total: -58.85 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -86.32 3.13 -83.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194659863.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.153 kcal (2) G-P(sol) polarization free energy of solvation -86.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.183 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds