Wall clock time and date at job start Tue Mar 31 2020 15:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21276 * 119.99722 * 2 1 4 4 N 1.34774 * 119.99961 * 180.02562 * 2 1 3 5 5 C 1.47240 * 121.34707 * 359.97438 * 4 2 1 6 6 C 1.52788 * 107.88377 * 115.69506 * 5 4 2 7 7 C 1.50605 * 110.84842 * 47.47848 * 6 5 4 8 8 C 1.38973 * 117.61155 * 160.41897 * 7 6 5 9 9 C 1.37908 * 120.59001 * 179.37867 * 8 7 6 10 10 C 1.38267 * 119.81669 * 0.02562 * 9 8 7 11 11 C 1.37955 * 119.72149 * 0.18787 * 10 9 8 12 12 C 1.37673 * 122.86555 * 340.17297 * 7 6 5 13 13 C 1.46686 * 121.34030 * 180.02562 * 4 2 1 14 14 H 1.09003 * 109.40634 * 344.30538 * 13 4 2 15 15 C 1.52999 * 109.43961 * 104.20273 * 13 4 2 16 16 C 1.50706 * 109.46573 * 295.21139 * 15 13 4 17 17 O 1.21274 * 120.00042 * 359.72068 * 16 15 13 18 18 N 1.34777 * 119.99766 * 179.97438 * 16 15 13 19 19 C 1.46496 * 120.00266 * 179.97438 * 18 16 15 20 20 H 1.09002 * 109.46997 * 325.00809 * 19 18 16 21 21 C 1.52998 * 109.46844 * 85.00291 * 19 18 16 22 22 C 1.50694 * 109.47397 * 205.00611 * 19 18 16 23 23 H 1.07998 * 120.00315 * 359.97438 * 22 19 18 24 24 C 1.37877 * 119.99781 * 180.02562 * 22 19 18 25 25 N 1.31512 * 120.00649 * 359.97438 * 24 22 19 26 26 Si 1.86805 * 120.00019 * 179.97438 * 24 22 19 27 27 H 1.48504 * 109.46759 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47331 * 119.99542 * 26 24 22 29 29 H 1.48502 * 109.47204 * 239.99734 * 26 24 22 30 30 H 1.09001 * 109.47067 * 269.99373 * 1 2 3 31 31 H 1.08997 * 109.47323 * 30.00068 * 1 2 3 32 32 H 1.09002 * 109.46608 * 149.99806 * 1 2 3 33 33 H 1.09001 * 109.77791 * 356.10055 * 5 4 2 34 34 H 1.09003 * 109.78222 * 235.29532 * 5 4 2 35 35 H 1.09004 * 109.20519 * 287.12988 * 6 5 4 36 36 H 1.09001 * 109.20614 * 167.83207 * 6 5 4 37 37 H 1.08007 * 119.70467 * 359.35887 * 8 7 6 38 38 H 1.07999 * 120.09280 * 180.02562 * 9 8 7 39 39 H 1.08001 * 120.13665 * 180.22353 * 10 9 8 40 40 H 1.07998 * 119.74312 * 179.97438 * 11 10 9 41 41 H 1.09000 * 109.47486 * 175.21204 * 15 13 4 42 42 H 1.09001 * 109.47362 * 55.20482 * 15 13 4 43 43 H 0.96999 * 120.00043 * 0.02562 * 18 16 15 44 44 H 1.09002 * 109.47121 * 180.02562 * 21 19 18 45 45 H 1.09001 * 109.47093 * 300.00142 * 21 19 18 46 46 H 1.09000 * 109.47516 * 60.00038 * 21 19 18 47 47 H 0.96994 * 120.00753 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4749 -2.4593 -0.0005 6 6 1.8026 -3.1730 -1.3111 7 6 3.2832 -3.1380 -1.5848 8 6 3.7946 -4.0684 -2.4815 9 6 5.1394 -4.0832 -2.7868 10 6 5.9885 -3.1655 -2.1965 11 6 5.4844 -2.2435 -1.3026 12 6 4.1312 -2.2296 -0.9922 13 6 3.6473 -1.2015 0.0000 14 1 4.0327 -0.2203 -0.2773 15 6 4.1476 -1.5682 1.3986 16 6 3.7690 -0.4791 2.3690 17 8 3.1636 0.4968 1.9793 18 7 4.1077 -0.5873 3.6691 19 6 3.7402 0.4717 4.6123 20 1 3.7925 1.4385 4.1116 21 6 2.3149 0.2344 5.1154 22 6 4.6936 0.4581 5.7792 23 1 5.4932 -0.2671 5.8149 24 6 4.5446 1.3708 6.8018 25 7 3.5708 2.2536 6.7587 26 14 5.7261 1.3536 8.2487 27 1 6.7247 0.2709 8.0594 28 1 6.4237 2.6617 8.3338 29 1 4.9687 1.1140 9.5034 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3632 -0.8900 -0.5139 33 1 0.4000 -2.2923 0.0697 34 1 1.8107 -3.0632 0.8424 35 1 1.2752 -2.6815 -2.1287 36 1 1.4745 -4.2104 -1.2462 37 1 3.1331 -4.7866 -2.9431 38 1 5.5282 -4.8096 -3.4851 39 1 7.0420 -3.1700 -2.4346 40 1 6.1474 -1.5268 -0.8410 41 1 5.2319 -1.6772 1.3797 42 1 3.6933 -2.5082 1.7122 43 1 4.5954 -1.3659 3.9800 44 1 2.0413 1.0225 5.8169 45 1 1.6253 0.2442 4.2714 46 1 2.2625 -0.7324 5.6161 47 1 3.4662 2.8960 7.4779 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194659894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:29 Heat of formation + Delta-G solvation = -45.435770 kcal Electronic energy + Delta-G solvation = -29143.491464 eV Core-core repulsion = 25290.949450 eV Total energy + Delta-G solvation = -3852.542014 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.78250 -38.87121 -38.34949 -36.06242 -34.71907 -33.54402 -32.28329 -32.04276 -30.20016 -29.34980 -29.07308 -27.77531 -25.21261 -24.38092 -23.79719 -22.25379 -21.08556 -20.67179 -19.24819 -18.28631 -17.40788 -16.87147 -16.67596 -15.84835 -15.56674 -15.49649 -15.09629 -14.95562 -14.53552 -14.32579 -14.25694 -13.82554 -13.46607 -13.30275 -13.15362 -12.97747 -12.63513 -12.50225 -12.37272 -12.14339 -11.93131 -11.76852 -11.69087 -11.56522 -11.36967 -11.05053 -10.94551 -10.93124 -10.87750 -10.61414 -10.24896 -10.19879 -9.30983 -8.99838 -8.97607 -8.83088 -8.63722 -8.48249 -8.43499 -7.75747 -6.07604 -4.16608 1.18595 1.20857 3.07794 3.20159 3.25799 3.33394 3.36160 3.55961 3.60419 4.12629 4.38355 4.45586 4.60308 4.75354 4.81918 4.89009 4.96117 5.05151 5.12490 5.17813 5.24330 5.27984 5.33374 5.39240 5.46469 5.49155 5.59748 5.64372 5.73082 5.83193 5.84717 5.91185 6.00124 6.09041 6.28438 6.35294 6.42709 6.74828 6.83532 6.87833 7.01378 7.22352 7.57331 7.65624 7.72589 7.76320 7.99202 8.21492 8.66995 8.78804 8.87230 9.31125 9.52289 10.98338 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015868 B = 0.003310 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.186383 B = 8458.115721 C = 9583.629917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.519 3.481 3 O -0.498 6.498 4 N -0.612 5.612 5 C 0.105 3.895 6 C -0.097 4.097 7 C -0.069 4.069 8 C -0.122 4.122 9 C -0.122 4.122 10 C -0.121 4.121 11 C -0.110 4.110 12 C -0.081 4.081 13 C 0.203 3.797 14 H 0.113 0.887 15 C -0.150 4.150 16 C 0.490 3.510 17 O -0.521 6.521 18 N -0.715 5.715 19 C 0.267 3.733 20 H 0.047 0.953 21 C -0.143 4.143 22 C -0.532 4.532 23 H 0.060 0.940 24 C 0.065 3.935 25 N -0.883 5.883 26 Si 0.900 3.100 27 H -0.273 1.273 28 H -0.283 1.283 29 H -0.283 1.283 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.385 0.615 44 H 0.088 0.912 45 H 0.012 0.988 46 H 0.023 0.977 47 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.789 -15.958 -18.056 24.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.307 3.693 3 O -0.370 6.370 4 N -0.347 5.347 5 C -0.019 4.019 6 C -0.135 4.135 7 C -0.070 4.070 8 C -0.140 4.140 9 C -0.140 4.140 10 C -0.139 4.139 11 C -0.128 4.128 12 C -0.082 4.082 13 C 0.098 3.902 14 H 0.131 0.869 15 C -0.191 4.191 16 C 0.274 3.726 17 O -0.397 6.397 18 N -0.364 5.364 19 C 0.165 3.835 20 H 0.065 0.935 21 C -0.202 4.202 22 C -0.570 4.570 23 H 0.078 0.922 24 C -0.138 4.138 25 N -0.521 5.521 26 Si 0.728 3.272 27 H -0.198 1.198 28 H -0.209 1.209 29 H -0.209 1.209 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.216 0.784 44 H 0.107 0.893 45 H 0.031 0.969 46 H 0.042 0.958 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.025 -14.421 -18.204 23.420 hybrid contribution 0.948 -0.673 1.088 1.592 sum -2.077 -15.094 -17.116 22.915 Atomic orbital electron populations 1.21932 0.92778 1.03819 1.04602 1.20406 0.89849 0.82987 0.76042 1.90753 1.69943 1.30347 1.45945 1.47913 1.05455 1.05691 1.75673 1.21708 0.98099 0.85059 0.96998 1.20858 0.92431 1.01472 0.98703 1.19460 0.95282 0.95195 0.97035 1.21134 0.95587 0.98914 0.98385 1.21050 0.93700 0.99113 1.00122 1.21063 0.99781 0.95727 0.97359 1.21125 0.94550 0.99081 0.98062 1.19858 0.93681 0.96681 0.97970 1.19505 0.80759 0.98516 0.91381 0.86909 1.22106 1.02730 0.99544 0.94717 1.20370 0.80924 0.87909 0.83433 1.90867 1.39992 1.31452 1.77415 1.46510 1.57134 1.24754 1.08010 1.18657 0.92125 0.86360 0.86379 0.93492 1.22040 0.97694 1.00955 0.99482 1.21277 1.13575 1.17316 1.04840 0.92163 1.24896 0.95588 0.95073 0.98233 1.69917 1.30630 1.18506 1.33045 0.86417 0.80767 0.77976 0.82066 1.19774 1.20888 1.20926 0.89048 0.89372 0.90720 0.88908 0.90983 0.90235 0.89784 0.86259 0.86224 0.85976 0.85706 0.88729 0.89562 0.78387 0.89335 0.96932 0.95763 0.92704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.05 9.52 36.01 0.34 -1.71 16 2 C 0.52 8.67 6.61 -10.99 -0.07 8.60 16 3 O -0.50 -10.97 14.16 -18.46 -0.26 -11.23 16 4 N -0.61 -8.56 2.32 -166.73 -0.39 -8.95 16 5 C 0.10 1.01 6.12 -3.75 -0.02 0.99 16 6 C -0.10 -0.79 5.86 -28.04 -0.16 -0.95 16 7 C -0.07 -0.71 5.76 -104.60 -0.60 -1.32 16 8 C -0.12 -1.09 9.59 -39.43 -0.38 -1.47 16 9 C -0.12 -1.06 10.05 -39.69 -0.40 -1.46 16 10 C -0.12 -1.14 10.05 -39.67 -0.40 -1.54 16 11 C -0.11 -1.20 9.18 -39.46 -0.36 -1.56 16 12 C -0.08 -0.97 5.17 -104.53 -0.54 -1.51 16 13 C 0.20 2.94 2.00 -68.91 -0.14 2.80 16 14 H 0.11 2.00 6.99 -51.93 -0.36 1.64 16 15 C -0.15 -2.18 5.21 -27.88 -0.15 -2.32 16 16 C 0.49 9.91 7.65 -10.98 -0.08 9.82 16 17 O -0.52 -12.72 11.44 -18.46 -0.21 -12.94 16 18 N -0.72 -15.25 5.07 -54.94 -0.28 -15.52 16 19 C 0.27 6.99 2.56 -69.09 -0.18 6.81 16 20 H 0.05 1.45 7.57 -51.93 -0.39 1.05 16 21 C -0.14 -3.65 9.26 37.16 0.34 -3.31 16 22 C -0.53 -14.45 8.73 -34.44 -0.30 -14.75 16 23 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 24 C 0.06 1.79 5.30 -17.82 -0.09 1.70 16 25 N -0.88 -25.54 11.32 55.43 0.63 -24.91 16 26 Si 0.90 21.05 29.54 -169.99 -5.02 16.02 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 29 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.62 6.19 -51.93 -0.32 0.30 16 33 H 0.09 0.71 5.57 -51.93 -0.29 0.42 16 34 H 0.07 0.69 7.25 -51.93 -0.38 0.31 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.50 8.11 -51.93 -0.42 0.08 16 37 H 0.12 0.80 8.05 -52.48 -0.42 0.37 16 38 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 39 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 40 H 0.12 1.28 8.05 -52.49 -0.42 0.85 16 41 H 0.09 1.20 7.79 -51.93 -0.40 0.80 16 42 H 0.09 1.10 7.22 -51.93 -0.37 0.73 16 43 H 0.38 7.13 8.54 -40.82 -0.35 6.78 16 44 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16 45 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 46 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -35.41 374.06 -10.04 -45.45 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -6.95 Total: 7.60 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -3.19 Total: -1.16 kcal Atomic # 7 Polarization: -49.35 SS G_CDS: -0.04 Total: -49.39 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.47 Total: -24.16 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -35.41 -10.04 -45.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194659894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.015 kcal (2) G-P(sol) polarization free energy of solvation -35.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds