Wall clock time and date at job start Tue Mar 31 2020 15:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21276 * 119.99722 * 2 1 4 4 N 1.34774 * 119.99961 * 180.02562 * 2 1 3 5 5 C 1.47240 * 121.34707 * 359.97438 * 4 2 1 6 6 C 1.52788 * 107.88377 * 115.69506 * 5 4 2 7 7 C 1.50605 * 110.84842 * 47.47848 * 6 5 4 8 8 C 1.38973 * 117.61155 * 160.41897 * 7 6 5 9 9 C 1.37908 * 120.59001 * 179.37867 * 8 7 6 10 10 C 1.38267 * 119.81669 * 0.02562 * 9 8 7 11 11 C 1.37955 * 119.72149 * 0.18787 * 10 9 8 12 12 C 1.37673 * 122.86555 * 340.17297 * 7 6 5 13 13 C 1.46686 * 121.34030 * 180.02562 * 4 2 1 14 14 H 1.09003 * 109.40634 * 344.30538 * 13 4 2 15 15 C 1.52999 * 109.43961 * 104.20273 * 13 4 2 16 16 C 1.50706 * 109.46573 * 295.21139 * 15 13 4 17 17 O 1.21274 * 120.00042 * 359.72068 * 16 15 13 18 18 N 1.34777 * 119.99766 * 179.97438 * 16 15 13 19 19 C 1.46496 * 120.00266 * 179.97438 * 18 16 15 20 20 H 1.09002 * 109.46997 * 325.00809 * 19 18 16 21 21 C 1.52998 * 109.46844 * 85.00291 * 19 18 16 22 22 C 1.50694 * 109.47397 * 205.00611 * 19 18 16 23 23 H 1.07998 * 120.00315 * 359.97438 * 22 19 18 24 24 C 1.37877 * 119.99781 * 180.02562 * 22 19 18 25 25 N 1.31512 * 120.00649 * 359.97438 * 24 22 19 26 26 Si 1.86805 * 120.00019 * 179.97438 * 24 22 19 27 27 H 1.48504 * 109.46759 * 359.97438 * 26 24 22 28 28 H 1.48493 * 109.47331 * 119.99542 * 26 24 22 29 29 H 1.48502 * 109.47204 * 239.99734 * 26 24 22 30 30 H 1.09001 * 109.47067 * 269.99373 * 1 2 3 31 31 H 1.08997 * 109.47323 * 30.00068 * 1 2 3 32 32 H 1.09002 * 109.46608 * 149.99806 * 1 2 3 33 33 H 1.09001 * 109.77791 * 356.10055 * 5 4 2 34 34 H 1.09003 * 109.78222 * 235.29532 * 5 4 2 35 35 H 1.09004 * 109.20519 * 287.12988 * 6 5 4 36 36 H 1.09001 * 109.20614 * 167.83207 * 6 5 4 37 37 H 1.08007 * 119.70467 * 359.35887 * 8 7 6 38 38 H 1.07999 * 120.09280 * 180.02562 * 9 8 7 39 39 H 1.08001 * 120.13665 * 180.22353 * 10 9 8 40 40 H 1.07998 * 119.74312 * 179.97438 * 11 10 9 41 41 H 1.09000 * 109.47486 * 175.21204 * 15 13 4 42 42 H 1.09001 * 109.47362 * 55.20482 * 15 13 4 43 43 H 0.96999 * 120.00043 * 0.02562 * 18 16 15 44 44 H 1.09002 * 109.47121 * 180.02562 * 21 19 18 45 45 H 1.09001 * 109.47093 * 300.00142 * 21 19 18 46 46 H 1.09000 * 109.47516 * 60.00038 * 21 19 18 47 47 H 0.96994 * 120.00753 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4749 -2.4593 -0.0005 6 6 1.8026 -3.1730 -1.3111 7 6 3.2832 -3.1380 -1.5848 8 6 3.7946 -4.0684 -2.4815 9 6 5.1394 -4.0832 -2.7868 10 6 5.9885 -3.1655 -2.1965 11 6 5.4844 -2.2435 -1.3026 12 6 4.1312 -2.2296 -0.9922 13 6 3.6473 -1.2015 0.0000 14 1 4.0327 -0.2203 -0.2773 15 6 4.1476 -1.5682 1.3986 16 6 3.7690 -0.4791 2.3690 17 8 3.1636 0.4968 1.9793 18 7 4.1077 -0.5873 3.6691 19 6 3.7402 0.4717 4.6123 20 1 3.7925 1.4385 4.1116 21 6 2.3149 0.2344 5.1154 22 6 4.6936 0.4581 5.7792 23 1 5.4932 -0.2671 5.8149 24 6 4.5446 1.3708 6.8018 25 7 3.5708 2.2536 6.7587 26 14 5.7261 1.3536 8.2487 27 1 6.7247 0.2709 8.0594 28 1 6.4237 2.6617 8.3338 29 1 4.9687 1.1140 9.5034 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3634 0.8899 -0.5138 32 1 -0.3632 -0.8900 -0.5139 33 1 0.4000 -2.2923 0.0697 34 1 1.8107 -3.0632 0.8424 35 1 1.2752 -2.6815 -2.1287 36 1 1.4745 -4.2104 -1.2462 37 1 3.1331 -4.7866 -2.9431 38 1 5.5282 -4.8096 -3.4851 39 1 7.0420 -3.1700 -2.4346 40 1 6.1474 -1.5268 -0.8410 41 1 5.2319 -1.6772 1.3797 42 1 3.6933 -2.5082 1.7122 43 1 4.5954 -1.3659 3.9800 44 1 2.0413 1.0225 5.8169 45 1 1.6253 0.2442 4.2714 46 1 2.2625 -0.7324 5.6161 47 1 3.4662 2.8960 7.4779 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194659894.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:28 Heat of formation + Delta-G solvation = -67.497804 kcal Electronic energy + Delta-G solvation = -29144.448146 eV Core-core repulsion = 25290.949450 eV Total energy + Delta-G solvation = -3853.498696 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.81100 -40.17014 -39.72686 -37.17308 -36.61103 -34.54820 -34.26078 -33.00353 -31.44488 -30.67432 -30.03936 -29.08692 -27.36107 -25.44985 -24.62051 -23.27576 -22.58312 -21.75614 -21.03717 -19.31899 -18.92513 -18.13452 -17.86467 -17.15696 -17.13253 -16.70286 -16.44065 -16.10693 -15.83025 -15.53257 -15.38046 -15.13668 -14.66555 -14.54437 -14.33228 -14.05070 -14.00771 -13.69467 -13.66592 -13.44008 -13.16344 -12.99650 -12.86361 -12.85593 -12.73979 -12.69829 -12.43380 -12.38231 -12.28657 -12.12733 -11.81107 -11.68967 -11.10440 -10.67813 -10.59962 -10.44622 -9.72482 -9.64691 -9.52436 -9.47620 -8.18925 -6.37075 0.42713 0.49552 1.41869 1.42733 1.55257 1.84839 2.01098 2.13273 2.34759 2.63934 2.87536 3.11014 3.60071 3.74275 3.86309 3.89673 3.99516 4.13595 4.22542 4.28552 4.34127 4.38512 4.40707 4.53580 4.54942 4.65744 4.67017 4.75357 4.79254 4.81594 4.89469 4.92594 5.00998 5.08489 5.09345 5.13382 5.27730 5.43741 5.50937 5.62563 5.64188 5.65561 5.70571 5.79726 5.93479 6.10599 6.13536 6.62548 6.72550 7.05283 7.31650 7.45669 7.72212 8.87618 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015868 B = 0.003310 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.186383 B = 8458.115721 C = 9583.629917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.503 3.497 3 O -0.570 6.570 4 N -0.610 5.610 5 C 0.095 3.905 6 C -0.091 4.091 7 C -0.077 4.077 8 C -0.121 4.121 9 C -0.120 4.120 10 C -0.127 4.127 11 C -0.127 4.127 12 C -0.100 4.100 13 C 0.206 3.794 14 H 0.065 0.935 15 C -0.132 4.132 16 C 0.483 3.517 17 O -0.563 6.563 18 N -0.712 5.712 19 C 0.275 3.725 20 H -0.013 1.013 21 C -0.126 4.126 22 C -0.546 4.546 23 H 0.073 0.927 24 C 0.011 3.989 25 N -0.919 5.919 26 Si 0.974 3.026 27 H -0.259 1.259 28 H -0.285 1.285 29 H -0.276 1.276 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.118 0.882 41 H 0.114 0.886 42 H 0.115 0.885 43 H 0.401 0.599 44 H 0.063 0.937 45 H 0.007 0.993 46 H 0.040 0.960 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.668 -20.249 -18.869 27.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.293 3.707 3 O -0.447 6.447 4 N -0.344 5.344 5 C -0.026 4.026 6 C -0.128 4.128 7 C -0.077 4.077 8 C -0.139 4.139 9 C -0.138 4.138 10 C -0.145 4.145 11 C -0.145 4.145 12 C -0.101 4.101 13 C 0.101 3.899 14 H 0.083 0.917 15 C -0.173 4.173 16 C 0.269 3.731 17 O -0.442 6.442 18 N -0.362 5.362 19 C 0.171 3.829 20 H 0.005 0.995 21 C -0.185 4.185 22 C -0.584 4.584 23 H 0.091 0.909 24 C -0.188 4.188 25 N -0.558 5.558 26 Si 0.799 3.201 27 H -0.182 1.182 28 H -0.211 1.211 29 H -0.202 1.202 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.136 0.864 37 H 0.167 0.833 38 H 0.165 0.835 39 H 0.157 0.843 40 H 0.136 0.864 41 H 0.132 0.868 42 H 0.133 0.867 43 H 0.236 0.764 44 H 0.081 0.919 45 H 0.026 0.974 46 H 0.060 0.940 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.899 -18.810 -19.034 26.917 hybrid contribution 0.925 0.645 1.240 1.676 sum -1.975 -18.165 -17.794 25.505 Atomic orbital electron populations 1.21928 0.89262 1.06062 1.05020 1.21332 0.91753 0.82790 0.74838 1.90713 1.71647 1.32961 1.49390 1.48060 1.05484 1.06771 1.74082 1.22092 0.99106 0.82930 0.98467 1.20901 0.91093 1.03230 0.97622 1.19756 0.96245 0.94804 0.96916 1.21470 0.96154 0.98713 0.97579 1.21447 0.93713 0.98879 0.99716 1.21317 1.01005 0.95360 0.96782 1.21215 0.94406 0.99803 0.99086 1.19656 0.94466 0.97153 0.98845 1.19279 0.81386 0.97278 0.91941 0.91709 1.22039 1.04153 0.97963 0.93122 1.21359 0.79626 0.88595 0.83492 1.90884 1.41702 1.33622 1.77999 1.46279 1.57636 1.24256 1.08043 1.18213 0.92743 0.85318 0.86612 0.99478 1.21819 0.97228 1.00771 0.98663 1.21598 1.14013 1.17782 1.05024 0.90924 1.25859 0.97247 0.94482 1.01255 1.70077 1.32432 1.19221 1.34054 0.85264 0.78548 0.78084 0.78225 1.18225 1.21078 1.20183 0.89291 0.89415 0.86287 0.86551 0.90407 0.89515 0.86372 0.83338 0.83543 0.84252 0.86414 0.86768 0.86718 0.76437 0.91856 0.97375 0.94046 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.85 9.52 71.24 0.68 -3.17 16 2 C 0.50 17.55 6.61 87.66 0.58 18.13 16 3 O -0.57 -27.35 14.16 19.95 0.28 -27.07 16 4 N -0.61 -17.09 2.32 -799.82 -1.85 -18.95 16 5 C 0.10 1.59 6.12 86.17 0.53 2.12 16 6 C -0.09 -1.13 5.86 29.75 0.17 -0.95 16 7 C -0.08 -1.36 5.76 -19.85 -0.11 -1.48 16 8 C -0.12 -1.67 9.59 22.37 0.21 -1.45 16 9 C -0.12 -1.65 10.05 22.20 0.22 -1.43 16 10 C -0.13 -2.11 10.05 22.21 0.22 -1.89 16 11 C -0.13 -2.71 9.18 22.35 0.21 -2.51 16 12 C -0.10 -2.32 5.17 -19.80 -0.10 -2.42 16 13 C 0.21 6.17 2.00 44.26 0.09 6.26 16 14 H 0.06 2.55 6.99 -2.39 -0.02 2.53 16 15 C -0.13 -3.84 5.21 29.85 0.16 -3.69 16 16 C 0.48 20.31 7.65 87.66 0.67 20.98 16 17 O -0.56 -29.53 11.44 19.96 0.23 -29.31 16 18 N -0.71 -31.01 5.07 -446.12 -2.26 -33.27 16 19 C 0.27 15.02 2.56 44.24 0.11 15.13 16 20 H -0.01 -0.84 7.57 -2.39 -0.02 -0.86 16 21 C -0.13 -6.66 9.26 71.98 0.67 -5.99 16 22 C -0.55 -30.07 8.73 25.60 0.22 -29.85 16 23 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 24 C 0.01 0.63 5.30 84.65 0.45 1.07 16 25 N -0.92 -54.84 11.32 21.45 0.24 -54.60 16 26 Si 0.97 43.23 29.54 68.60 2.03 45.26 16 27 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 28 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 29 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 30 H 0.09 2.15 8.14 -2.39 -0.02 2.14 16 31 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 32 H 0.12 1.63 6.19 -2.39 -0.01 1.62 16 33 H 0.12 1.35 5.57 -2.39 -0.01 1.34 16 34 H 0.08 1.24 7.25 -2.39 -0.02 1.22 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.12 0.73 8.11 -2.39 -0.02 0.71 16 37 H 0.15 1.16 8.05 -2.91 -0.02 1.14 16 38 H 0.15 1.22 8.06 -2.91 -0.02 1.19 16 39 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 40 H 0.12 2.54 8.05 -2.91 -0.02 2.51 16 41 H 0.11 2.87 7.79 -2.39 -0.02 2.85 16 42 H 0.11 2.70 7.22 -2.39 -0.02 2.68 16 43 H 0.40 14.65 8.54 -92.71 -0.79 13.86 16 44 H 0.06 3.67 6.07 -2.39 -0.01 3.65 16 45 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 47 H 0.26 14.87 8.31 -92.71 -0.77 14.10 16 Total: -1.00 -84.62 374.06 3.83 -80.78 By element: Atomic # 1 Polarization: 28.08 SS G_CDS: 0.20 Total: 28.28 kcal Atomic # 6 Polarization: 3.91 SS G_CDS: 4.98 Total: 8.88 kcal Atomic # 7 Polarization: -102.95 SS G_CDS: -3.87 Total: -106.82 kcal Atomic # 8 Polarization: -56.88 SS G_CDS: 0.51 Total: -56.37 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -84.62 3.83 -80.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194659894.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.283 kcal (2) G-P(sol) polarization free energy of solvation -84.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds