Wall clock time and date at job start Tue Mar 31 2020 15:51:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46957 * 2 1 4 4 C 1.50693 * 109.47112 * 239.99891 * 2 1 3 5 5 H 1.08001 * 119.99969 * 239.99399 * 4 2 1 6 6 C 1.37881 * 120.00199 * 59.99997 * 4 2 1 7 7 N 1.31517 * 119.99816 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00167 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47081 * 90.00050 * 8 6 4 10 10 H 1.48503 * 109.47395 * 209.99787 * 8 6 4 11 11 H 1.48497 * 109.47137 * 329.99936 * 8 6 4 12 12 N 1.46500 * 109.47208 * 119.99592 * 2 1 3 13 13 C 1.34778 * 120.00196 * 275.28066 * 12 2 1 14 14 O 1.21280 * 119.99977 * 359.72161 * 13 12 2 15 15 C 1.50705 * 119.99895 * 179.72579 * 13 12 2 16 16 H 1.08993 * 110.85452 * 59.29771 * 15 13 12 17 17 C 1.54627 * 110.96990 * 295.50490 * 15 13 12 18 18 C 1.51282 * 104.19372 * 266.68458 * 17 15 13 19 19 O 1.21284 * 124.94148 * 163.78836 * 18 17 15 20 20 N 1.34418 * 110.11367 * 343.74401 * 18 17 15 21 21 C 1.46508 * 124.34757 * 179.59296 * 20 18 17 22 22 H 1.08995 * 109.47028 * 183.33159 * 21 20 18 23 23 C 1.52999 * 109.47144 * 63.32526 * 21 20 18 24 24 C 1.50704 * 109.46703 * 303.33120 * 21 20 18 25 25 C 1.38236 * 120.00054 * 325.45334 * 24 21 20 26 26 C 1.38234 * 119.99659 * 179.78819 * 25 24 21 27 27 C 1.38234 * 120.00314 * 0.46845 * 26 25 24 28 28 C 1.38237 * 119.99614 * 359.76244 * 27 26 25 29 29 C 1.38232 * 120.00564 * 0.02562 * 28 27 26 30 30 C 1.46855 * 111.31678 * 359.59103 * 20 18 17 31 31 H 1.09000 * 109.46821 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46963 * 299.99547 * 1 2 3 33 33 H 1.08992 * 109.47306 * 60.00321 * 1 2 3 34 34 H 0.96997 * 119.99870 * 180.02562 * 7 6 4 35 35 H 0.96995 * 120.00078 * 95.00276 * 12 2 1 36 36 H 1.09000 * 110.48444 * 25.35732 * 17 15 13 37 37 H 1.08991 * 110.48402 * 148.00185 * 17 15 13 38 38 H 1.09000 * 109.47769 * 300.00693 * 23 21 20 39 39 H 1.09003 * 109.46795 * 60.00564 * 23 21 20 40 40 H 1.09004 * 109.47130 * 179.97438 * 23 21 20 41 41 H 1.07998 * 120.00217 * 0.02562 * 25 24 21 42 42 H 1.07997 * 119.99989 * 180.24970 * 26 25 24 43 43 H 1.07998 * 120.00235 * 179.79121 * 27 26 25 44 44 H 1.08009 * 119.99897 * 179.97438 * 28 27 26 45 45 H 1.07996 * 120.00204 * 179.97438 * 29 28 27 46 46 H 1.09001 * 110.26438 * 258.04652 * 30 20 18 47 47 H 1.09000 * 110.28287 * 136.00967 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0078 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6309 -1.7565 -3.7118 12 7 2.0184 -0.6905 1.1962 13 6 2.1418 -0.0195 2.3585 14 8 1.8533 1.1572 2.4130 15 6 2.6383 -0.7314 3.5906 16 1 3.6336 -1.1439 3.4257 17 6 1.6477 -1.8347 4.0291 18 6 0.7562 -1.1514 5.0425 19 8 -0.3152 -1.5743 5.4222 20 7 1.3249 -0.0078 5.4617 21 6 0.7242 0.9047 6.4379 22 1 1.3614 1.7811 6.5560 23 6 0.5837 0.1910 7.7839 24 6 -0.6363 1.3345 5.9527 25 6 -0.8650 1.5077 4.6005 26 6 -2.1142 1.8977 4.1552 27 6 -3.1320 2.1238 5.0629 28 6 -2.9020 1.9551 6.4155 29 6 -1.6540 1.5609 6.8605 30 6 2.6257 0.2096 4.8156 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8899 34 1 0.7081 1.1608 -3.4844 35 1 2.2491 -1.6316 1.1527 36 1 1.0616 -2.1815 3.1780 37 1 2.1818 -2.6657 4.4897 38 1 -0.0535 -0.6854 7.6658 39 1 1.5678 -0.1198 8.1348 40 1 0.1372 0.8701 8.5103 41 1 -0.0688 1.3347 3.8916 42 1 -2.2941 2.0292 3.0985 43 1 -4.1071 2.4317 4.7152 44 1 -3.6971 2.1322 7.1247 45 1 -1.4742 1.4296 7.9173 46 1 3.4345 -0.0497 5.4987 47 1 2.7196 1.2472 4.4952 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000245382975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:03 Heat of formation + Delta-G solvation = -44.379080 kcal Electronic energy + Delta-G solvation = -29273.325813 eV Core-core repulsion = 25420.829620 eV Total energy + Delta-G solvation = -3852.496193 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.97586 -39.15734 -38.40970 -36.17100 -34.91386 -34.51504 -32.47055 -31.07425 -30.49084 -29.10328 -28.52292 -27.60351 -25.29955 -24.41289 -23.28497 -22.20076 -21.38339 -20.73147 -19.42506 -18.95944 -17.64861 -17.23042 -16.47739 -16.13383 -15.56739 -15.27335 -15.11735 -14.73478 -14.56176 -14.30099 -14.13234 -13.98379 -13.66969 -13.44157 -13.16755 -12.85963 -12.78594 -12.52065 -12.43990 -12.08058 -11.93480 -11.79434 -11.70603 -11.65425 -11.37927 -11.13474 -10.97336 -10.87775 -10.80441 -10.68918 -10.36352 -10.27106 -9.65406 -9.13560 -9.08093 -8.78353 -8.71032 -8.59666 -8.47407 -7.99517 -6.16071 -4.25679 1.47706 1.61143 2.68578 3.00078 3.19097 3.22209 3.29109 3.30632 3.88539 3.97069 4.31714 4.32147 4.42449 4.70688 4.85276 4.89608 5.05559 5.11629 5.14440 5.17414 5.19158 5.33489 5.41990 5.43638 5.47822 5.61771 5.64884 5.69500 5.80725 5.83953 5.84184 6.05975 6.14836 6.23981 6.53351 6.60044 6.73624 6.78698 6.82794 6.93258 7.10558 7.18580 7.19590 7.38079 7.49738 7.64526 7.86215 8.10698 8.27825 8.57412 8.71984 9.01567 9.41908 10.89781 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.003474 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.584680 B = 8058.512782 C = 9134.734969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.266 3.734 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.882 5.882 8 Si 0.901 3.099 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.704 5.704 13 C 0.507 3.493 14 O -0.547 6.547 15 C -0.129 4.129 16 H 0.120 0.880 17 C -0.148 4.148 18 C 0.521 3.479 19 O -0.522 6.522 20 N -0.610 5.610 21 C 0.199 3.801 22 H 0.099 0.901 23 C -0.164 4.164 24 C -0.094 4.094 25 C -0.095 4.095 26 C -0.116 4.116 27 C -0.122 4.122 28 C -0.127 4.127 29 C -0.113 4.113 30 C 0.116 3.884 31 H 0.026 0.974 32 H 0.013 0.987 33 H 0.090 0.910 34 H 0.265 0.735 35 H 0.389 0.611 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.059 0.941 40 H 0.069 0.931 41 H 0.133 0.867 42 H 0.121 0.879 43 H 0.117 0.883 44 H 0.117 0.883 45 H 0.121 0.879 46 H 0.076 0.924 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.192 -1.207 18.802 18.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.351 5.351 13 C 0.291 3.709 14 O -0.426 6.426 15 C -0.151 4.151 16 H 0.138 0.862 17 C -0.188 4.188 18 C 0.309 3.691 19 O -0.398 6.398 20 N -0.345 5.345 21 C 0.097 3.903 22 H 0.117 0.883 23 C -0.222 4.222 24 C -0.095 4.095 25 C -0.113 4.113 26 C -0.134 4.134 27 C -0.140 4.140 28 C -0.145 4.145 29 C -0.131 4.131 30 C -0.007 4.007 31 H 0.045 0.955 32 H 0.032 0.968 33 H 0.108 0.892 34 H 0.075 0.925 35 H 0.222 0.778 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.078 0.922 40 H 0.088 0.912 41 H 0.151 0.849 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.139 0.861 46 H 0.094 0.906 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.303 -0.406 18.903 18.909 hybrid contribution 0.440 -0.929 -1.099 1.505 sum 0.743 -1.336 17.804 17.869 Atomic orbital electron populations 1.22068 0.98405 0.99133 1.00844 1.18754 0.90999 0.93932 0.79884 0.93316 1.21201 1.32583 1.13266 0.90309 0.92061 1.24883 0.94782 0.94912 0.99072 1.69899 1.35757 1.22395 1.23928 0.86451 0.79169 0.79290 0.82211 1.20535 1.21069 1.19843 1.46510 1.64587 1.13629 1.10348 1.20021 0.78925 0.87461 0.84480 1.90647 1.51116 1.15897 1.84924 1.22386 1.01520 0.96548 0.94601 0.86212 1.22380 0.97987 0.98210 1.00229 1.20730 0.85687 0.81010 0.81697 1.90713 1.21079 1.67994 1.59990 1.48321 1.20586 1.22410 1.43135 1.19688 0.91446 0.91748 0.87423 0.88335 1.22232 1.02546 1.01936 0.95461 1.19999 0.95183 1.00308 0.94038 1.21275 0.97757 0.96911 0.95364 1.21211 0.93254 0.99091 0.99851 1.21140 0.98952 1.00463 0.93447 1.21024 0.96848 1.00982 0.95681 1.20956 0.92848 1.00204 0.99102 1.22052 0.84551 1.02011 0.92097 0.95512 0.96766 0.89156 0.92547 0.77842 0.87462 0.87128 0.90893 0.92202 0.91201 0.84902 0.86064 0.86446 0.86452 0.86121 0.90604 0.88360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.57 9.26 37.16 0.34 -3.23 16 2 C 0.27 6.48 2.56 -69.08 -0.18 6.31 16 3 H 0.05 1.38 7.58 -51.93 -0.39 0.98 16 4 C -0.54 -13.73 8.73 -34.44 -0.30 -14.03 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.44 11.32 55.43 0.63 -23.81 16 8 Si 0.90 20.26 29.54 -169.99 -5.02 15.24 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 12 N -0.70 -13.49 4.88 -54.93 -0.27 -13.76 16 13 C 0.51 8.94 7.08 -10.98 -0.08 8.87 16 14 O -0.55 -11.61 13.98 5.56 0.08 -11.53 16 15 C -0.13 -1.54 3.54 -90.13 -0.32 -1.85 16 16 H 0.12 1.06 8.14 -51.93 -0.42 0.63 16 17 C -0.15 -1.76 6.40 -26.74 -0.17 -1.93 16 18 C 0.52 7.77 6.86 -10.86 -0.07 7.69 16 19 O -0.52 -9.59 16.05 5.55 0.09 -9.50 16 20 N -0.61 -7.84 2.04 -166.08 -0.34 -8.18 16 21 C 0.20 2.40 3.28 -69.08 -0.23 2.17 16 22 H 0.10 1.01 8.07 -51.93 -0.42 0.59 16 23 C -0.16 -1.66 8.41 37.16 0.31 -1.35 16 24 C -0.09 -1.36 4.70 -104.62 -0.49 -1.85 16 25 C -0.09 -1.60 8.82 -39.58 -0.35 -1.95 16 26 C -0.12 -1.86 10.05 -39.58 -0.40 -2.26 16 27 C -0.12 -1.68 10.05 -39.58 -0.40 -2.07 16 28 C -0.13 -1.61 10.05 -39.58 -0.40 -2.01 16 29 C -0.11 -1.45 9.13 -39.58 -0.36 -1.81 16 30 C 0.12 1.29 6.66 -3.07 -0.02 1.27 16 31 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.64 16 35 H 0.39 6.40 8.54 -40.82 -0.35 6.05 16 36 H 0.11 1.41 7.75 -51.93 -0.40 1.01 16 37 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.92 7.00 -51.93 -0.36 0.56 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.57 6.56 -51.93 -0.34 0.23 16 41 H 0.13 2.54 6.28 -52.49 -0.33 2.21 16 42 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 43 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 44 H 0.12 1.16 8.06 -52.48 -0.42 0.73 16 45 H 0.12 1.23 6.07 -52.49 -0.32 0.91 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 47 H 0.10 1.24 6.98 -51.93 -0.36 0.88 16 LS Contribution 379.97 15.07 5.73 5.73 Total: -1.00 -32.50 379.97 -9.25 -41.74 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -6.94 Total: 10.46 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -3.20 Total: -6.38 kcal Atomic # 7 Polarization: -45.77 SS G_CDS: 0.02 Total: -45.75 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: 0.17 Total: -21.03 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.50 -9.25 -41.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245382975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.636 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds