Wall clock time and date at job start Tue Mar 31 2020 15:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46957 * 2 1 4 4 C 1.50693 * 109.47112 * 239.99891 * 2 1 3 5 5 H 1.08001 * 119.99969 * 239.99399 * 4 2 1 6 6 C 1.37881 * 120.00199 * 59.99997 * 4 2 1 7 7 N 1.31517 * 119.99816 * 359.97438 * 6 4 2 8 8 Si 1.86792 * 120.00167 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47081 * 90.00050 * 8 6 4 10 10 H 1.48503 * 109.47395 * 209.99787 * 8 6 4 11 11 H 1.48497 * 109.47137 * 329.99936 * 8 6 4 12 12 N 1.46500 * 109.47208 * 119.99592 * 2 1 3 13 13 C 1.34778 * 120.00196 * 275.28066 * 12 2 1 14 14 O 1.21280 * 119.99977 * 359.72161 * 13 12 2 15 15 C 1.50705 * 119.99895 * 179.72579 * 13 12 2 16 16 H 1.08993 * 110.85452 * 59.29771 * 15 13 12 17 17 C 1.54627 * 110.96990 * 295.50490 * 15 13 12 18 18 C 1.51282 * 104.19372 * 266.68458 * 17 15 13 19 19 O 1.21284 * 124.94148 * 163.78836 * 18 17 15 20 20 N 1.34418 * 110.11367 * 343.74401 * 18 17 15 21 21 C 1.46508 * 124.34757 * 179.59296 * 20 18 17 22 22 H 1.08995 * 109.47028 * 183.33159 * 21 20 18 23 23 C 1.52999 * 109.47144 * 63.32526 * 21 20 18 24 24 C 1.50704 * 109.46703 * 303.33120 * 21 20 18 25 25 C 1.38236 * 120.00054 * 325.45334 * 24 21 20 26 26 C 1.38234 * 119.99659 * 179.78819 * 25 24 21 27 27 C 1.38234 * 120.00314 * 0.46845 * 26 25 24 28 28 C 1.38237 * 119.99614 * 359.76244 * 27 26 25 29 29 C 1.38232 * 120.00564 * 0.02562 * 28 27 26 30 30 C 1.46855 * 111.31678 * 359.59103 * 20 18 17 31 31 H 1.09000 * 109.46821 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46963 * 299.99547 * 1 2 3 33 33 H 1.08992 * 109.47306 * 60.00321 * 1 2 3 34 34 H 0.96997 * 119.99870 * 180.02562 * 7 6 4 35 35 H 0.96995 * 120.00078 * 95.00276 * 12 2 1 36 36 H 1.09000 * 110.48444 * 25.35732 * 17 15 13 37 37 H 1.08991 * 110.48402 * 148.00185 * 17 15 13 38 38 H 1.09000 * 109.47769 * 300.00693 * 23 21 20 39 39 H 1.09003 * 109.46795 * 60.00564 * 23 21 20 40 40 H 1.09004 * 109.47130 * 179.97438 * 23 21 20 41 41 H 1.07998 * 120.00217 * 0.02562 * 25 24 21 42 42 H 1.07997 * 119.99989 * 180.24970 * 26 25 24 43 43 H 1.07998 * 120.00235 * 179.79121 * 27 26 25 44 44 H 1.08009 * 119.99897 * 179.97438 * 28 27 26 45 45 H 1.07996 * 120.00204 * 179.97438 * 29 28 27 46 46 H 1.09001 * 110.26438 * 258.04652 * 30 20 18 47 47 H 1.09000 * 110.28287 * 136.00967 * 30 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5884 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3225 -1.1196 -4.0078 9 1 1.3448 -2.1616 -4.4123 10 1 2.4873 -0.1403 -5.1120 11 1 3.6309 -1.7565 -3.7118 12 7 2.0184 -0.6905 1.1962 13 6 2.1418 -0.0195 2.3585 14 8 1.8533 1.1572 2.4130 15 6 2.6383 -0.7314 3.5906 16 1 3.6336 -1.1439 3.4257 17 6 1.6477 -1.8347 4.0291 18 6 0.7562 -1.1514 5.0425 19 8 -0.3152 -1.5743 5.4222 20 7 1.3249 -0.0078 5.4617 21 6 0.7242 0.9047 6.4379 22 1 1.3614 1.7811 6.5560 23 6 0.5837 0.1910 7.7839 24 6 -0.6363 1.3345 5.9527 25 6 -0.8650 1.5077 4.6005 26 6 -2.1142 1.8977 4.1552 27 6 -3.1320 2.1238 5.0629 28 6 -2.9020 1.9551 6.4155 29 6 -1.6540 1.5609 6.8605 30 6 2.6257 0.2096 4.8156 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5137 -0.8899 34 1 0.7081 1.1608 -3.4844 35 1 2.2491 -1.6316 1.1527 36 1 1.0616 -2.1815 3.1780 37 1 2.1818 -2.6657 4.4897 38 1 -0.0535 -0.6854 7.6658 39 1 1.5678 -0.1198 8.1348 40 1 0.1372 0.8701 8.5103 41 1 -0.0688 1.3347 3.8916 42 1 -2.2941 2.0292 3.0985 43 1 -4.1071 2.4317 4.7152 44 1 -3.6971 2.1322 7.1247 45 1 -1.4742 1.4296 7.9173 46 1 3.4345 -0.0497 5.4987 47 1 2.7196 1.2472 4.4952 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000245382975.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:02 Heat of formation + Delta-G solvation = -64.443469 kcal Electronic energy + Delta-G solvation = -29274.195870 eV Core-core repulsion = 25420.829620 eV Total energy + Delta-G solvation = -3853.366250 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.07071 -40.43703 -39.67540 -37.38617 -36.62723 -35.60482 -34.30836 -32.23614 -31.66309 -30.64034 -29.68632 -28.61693 -27.36069 -25.44166 -24.53657 -23.30971 -22.60416 -22.24984 -20.96607 -20.03336 -19.09886 -18.32658 -17.79597 -17.49096 -17.15143 -16.59687 -16.42970 -15.99177 -15.90297 -15.52403 -15.49131 -15.05228 -14.81616 -14.68863 -14.42804 -14.35656 -13.96927 -13.93068 -13.66592 -13.47617 -13.07102 -12.98980 -12.87436 -12.80933 -12.77221 -12.67037 -12.63398 -12.37760 -12.31441 -12.13991 -11.91129 -11.79212 -11.11426 -10.78927 -10.68614 -10.54687 -9.85630 -9.81710 -9.73406 -9.52345 -8.18024 -6.35470 0.38441 0.47143 1.45082 1.45225 1.55897 1.59109 1.79705 2.06224 2.34257 2.59960 2.86493 3.12819 3.32826 3.41046 3.72931 3.82509 3.91316 4.01685 4.09356 4.19504 4.24335 4.27411 4.43646 4.52443 4.61605 4.68082 4.68416 4.71167 4.76621 4.86754 4.87618 4.90154 4.93910 5.07912 5.08927 5.11432 5.25270 5.41774 5.51446 5.53139 5.59884 5.61781 5.66719 5.74798 5.89220 6.08439 6.09779 6.18197 6.73256 6.97251 7.20214 7.32751 7.57279 8.88207 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.016194 B = 0.003474 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.584680 B = 8058.512782 C = 9134.734969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.275 3.725 3 H 0.000 1.000 4 C -0.545 4.545 5 H 0.076 0.924 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.274 1.274 10 H -0.288 1.288 11 H -0.260 1.260 12 N -0.703 5.703 13 C 0.500 3.500 14 O -0.588 6.588 15 C -0.113 4.113 16 H 0.168 0.832 17 C -0.140 4.140 18 C 0.508 3.492 19 O -0.567 6.567 20 N -0.608 5.608 21 C 0.190 3.810 22 H 0.117 0.883 23 C -0.153 4.153 24 C -0.101 4.101 25 C -0.124 4.124 26 C -0.145 4.145 27 C -0.128 4.128 28 C -0.124 4.124 29 C -0.114 4.114 30 C 0.115 3.885 31 H 0.034 0.966 32 H 0.003 0.997 33 H 0.064 0.936 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.091 0.909 37 H 0.155 0.845 38 H 0.046 0.954 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.139 0.861 44 H 0.153 0.847 45 H 0.154 0.846 46 H 0.127 0.873 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.909 -2.964 21.269 21.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.171 3.829 3 H 0.018 0.982 4 C -0.583 4.583 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.796 3.204 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.184 1.184 12 N -0.352 5.352 13 C 0.286 3.714 14 O -0.470 6.470 15 C -0.134 4.134 16 H 0.185 0.815 17 C -0.180 4.180 18 C 0.297 3.703 19 O -0.447 6.447 20 N -0.340 5.340 21 C 0.088 3.912 22 H 0.135 0.865 23 C -0.210 4.210 24 C -0.102 4.102 25 C -0.143 4.143 26 C -0.164 4.164 27 C -0.146 4.146 28 C -0.142 4.142 29 C -0.132 4.132 30 C -0.007 4.007 31 H 0.053 0.947 32 H 0.022 0.978 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.241 0.759 36 H 0.110 0.890 37 H 0.173 0.827 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.157 0.843 44 H 0.171 0.829 45 H 0.171 0.829 46 H 0.145 0.855 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.065 -2.178 21.395 21.605 hybrid contribution -0.137 -0.282 -1.821 1.848 sum 1.927 -2.460 19.574 19.822 Atomic orbital electron populations 1.21872 0.99046 0.98910 0.99047 1.18251 0.90402 0.92023 0.82179 0.98192 1.21562 1.32479 1.13551 0.90702 0.90544 1.25811 0.94897 0.95535 1.02414 1.70062 1.37096 1.24052 1.24523 0.85351 0.79087 0.77959 0.77985 1.19965 1.21399 1.18400 1.46228 1.65032 1.14305 1.09613 1.21100 0.77555 0.87173 0.85539 1.90642 1.52418 1.18214 1.85697 1.22411 1.03356 0.96170 0.91442 0.81465 1.22429 0.97464 0.99045 0.99085 1.21266 0.85482 0.81622 0.81975 1.90679 1.22950 1.69359 1.61684 1.48449 1.21051 1.21709 1.42832 1.19974 0.90452 0.92620 0.88165 0.86504 1.22151 1.03344 1.01024 0.94497 1.20336 0.97147 0.99630 0.93092 1.21145 0.97279 0.99472 0.96387 1.21272 0.94329 1.00981 0.99771 1.21400 0.99102 1.00189 0.93925 1.21492 0.97830 0.99238 0.95596 1.21392 0.92390 0.98941 1.00464 1.22274 0.85069 1.00818 0.92547 0.94697 0.97754 0.91693 0.92668 0.75932 0.89009 0.82704 0.93501 0.90239 0.88953 0.88123 0.87806 0.84343 0.82888 0.82869 0.85538 0.90308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.75 9.26 71.98 0.67 -6.09 16 2 C 0.28 14.01 2.56 44.24 0.11 14.13 16 3 H 0.00 0.01 7.58 -2.39 -0.02 -0.01 16 4 C -0.54 -28.26 8.73 25.60 0.22 -28.03 16 5 H 0.08 3.65 7.74 -2.91 -0.02 3.62 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -52.83 11.32 21.45 0.24 -52.59 16 8 Si 0.97 41.60 29.54 68.60 2.03 43.62 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.29 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 12 N -0.70 -27.32 4.88 -446.09 -2.18 -29.49 16 13 C 0.50 17.84 7.08 87.66 0.62 18.46 16 14 O -0.59 -26.45 13.98 -3.03 -0.04 -26.49 16 15 C -0.11 -2.42 3.54 -10.48 -0.04 -2.45 16 16 H 0.17 2.10 8.14 -2.39 -0.02 2.08 16 17 C -0.14 -3.04 6.40 30.59 0.20 -2.84 16 18 C 0.51 14.77 6.86 87.90 0.60 15.38 16 19 O -0.57 -21.08 16.05 -3.04 -0.05 -21.13 16 20 N -0.61 -14.85 2.04 -797.94 -1.62 -16.47 16 21 C 0.19 4.30 3.28 44.24 0.15 4.45 16 22 H 0.12 2.18 8.07 -2.39 -0.02 2.16 16 23 C -0.15 -2.66 8.41 71.98 0.61 -2.06 16 24 C -0.10 -2.92 4.70 -19.86 -0.09 -3.02 16 25 C -0.12 -4.51 8.82 22.27 0.20 -4.31 16 26 C -0.15 -5.08 10.05 22.27 0.22 -4.86 16 27 C -0.13 -3.57 10.05 22.27 0.22 -3.35 16 28 C -0.12 -2.93 10.05 22.27 0.22 -2.70 16 29 C -0.11 -2.74 9.13 22.27 0.20 -2.53 16 30 C 0.12 2.28 6.66 86.82 0.58 2.85 16 31 H 0.03 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 33 H 0.06 3.70 6.07 -2.39 -0.01 3.69 16 34 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.41 12.96 8.54 -92.71 -0.79 12.17 16 36 H 0.09 2.33 7.75 -2.39 -0.02 2.32 16 37 H 0.16 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.05 1.10 7.00 -2.39 -0.02 1.08 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.09 1.16 6.56 -2.39 -0.02 1.15 16 41 H 0.10 4.23 6.28 -2.91 -0.02 4.21 16 42 H 0.10 3.78 8.06 -2.91 -0.02 3.75 16 43 H 0.14 3.12 8.06 -2.91 -0.02 3.10 16 44 H 0.15 2.49 8.06 -2.91 -0.02 2.47 16 45 H 0.15 2.60 6.07 -2.91 -0.02 2.59 16 46 H 0.13 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.08 1.94 6.98 -2.39 -0.02 1.92 16 Total: -1.00 -78.11 379.97 3.71 -74.40 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: 0.19 Total: 33.96 kcal Atomic # 6 Polarization: -10.95 SS G_CDS: 5.14 Total: -5.81 kcal Atomic # 7 Polarization: -94.99 SS G_CDS: -3.56 Total: -98.55 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: -0.09 Total: -47.62 kcal Atomic # 14 Polarization: 41.60 SS G_CDS: 2.03 Total: 43.62 kcal Total: -78.11 3.71 -74.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000245382975.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.961 kcal (2) G-P(sol) polarization free energy of solvation -78.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds