Wall clock time and date at job start Tue Mar 31 2020 17:02:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46906 * 109.46900 * 2 1 4 4 C 1.46899 * 110.99605 * 199.61253 * 3 2 1 5 5 C 1.52995 * 109.47282 * 66.04746 * 4 3 2 6 6 H 1.08998 * 109.47112 * 304.99792 * 5 4 3 7 7 C 1.47199 * 109.47257 * 64.99520 * 5 4 3 8 8 N 4.43042 * 98.62966 * 309.41135 * 2 1 3 9 9 C 1.53001 * 109.47285 * 184.99604 * 5 4 3 10 10 C 1.50697 * 109.47430 * 174.99770 * 9 5 4 11 11 H 1.08003 * 119.99704 * 0.02562 * 10 9 5 12 12 C 1.37876 * 120.00273 * 179.97438 * 10 9 5 13 13 N 1.31515 * 119.99662 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00066 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47038 * 90.00377 * 14 12 10 16 16 H 1.48500 * 109.47199 * 210.00089 * 14 12 10 17 17 H 1.48500 * 109.47436 * 330.00319 * 14 12 10 18 18 C 1.46896 * 111.00002 * 75.65968 * 3 2 1 19 19 C 1.52996 * 109.47046 * 199.83594 * 18 3 2 20 20 H 1.09004 * 109.70705 * 299.89852 * 19 18 3 21 21 C 1.53481 * 109.74240 * 179.27973 * 19 18 3 22 22 O 1.43177 * 108.24719 * 180.53806 * 21 19 18 23 23 C 1.36109 * 116.71304 * 46.15921 * 22 21 19 24 24 C 1.38702 * 119.39465 * 162.89601 * 23 22 21 25 25 C 1.38198 * 120.06368 * 179.86933 * 24 23 22 26 26 C 1.38254 * 120.11461 * 0.02562 * 25 24 23 27 27 C 1.38197 * 120.11024 * 0.04977 * 26 25 24 28 28 C 1.38698 * 120.06882 * 0.02562 * 27 26 25 29 29 O 1.36106 * 119.38985 * 179.81605 * 28 27 26 30 30 H 1.09003 * 109.47067 * 174.83860 * 1 2 3 31 31 H 1.09001 * 109.47111 * 294.83166 * 1 2 3 32 32 H 1.08997 * 109.47154 * 54.83622 * 1 2 3 33 33 H 1.09000 * 109.46956 * 240.00086 * 2 1 3 34 34 H 1.09002 * 109.47266 * 119.99743 * 2 1 3 35 35 H 1.09007 * 109.46567 * 186.04320 * 4 3 2 36 36 H 1.08999 * 109.46896 * 306.04262 * 4 3 2 37 37 H 1.08999 * 109.47299 * 294.99920 * 9 5 4 38 38 H 1.09000 * 109.46754 * 55.00114 * 9 5 4 39 39 H 0.97005 * 119.99608 * 179.97438 * 13 12 10 40 40 H 1.09000 * 109.47309 * 79.83192 * 18 3 2 41 41 H 1.09008 * 109.46943 * 319.83373 * 18 3 2 42 42 H 1.08993 * 109.71413 * 60.84276 * 21 19 18 43 43 H 1.09002 * 109.70103 * 300.21867 * 21 19 18 44 44 H 1.07996 * 119.96717 * 359.83324 * 24 23 22 45 45 H 1.08003 * 119.93889 * 179.97438 * 25 24 23 46 46 H 1.08004 * 119.94337 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.96036 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4131 1.4507 -0.4603 5 6 3.4838 1.0397 -1.9323 6 1 3.0308 0.0562 -2.0571 7 6 2.7562 2.0224 -2.7518 8 7 2.1948 2.7810 -3.3842 9 6 4.9467 0.9876 -2.3776 10 6 5.0239 0.4651 -3.7890 11 1 4.1200 0.1973 -4.3159 12 6 6.2485 0.3298 -4.4080 13 7 7.3492 0.6564 -3.7665 14 14 6.3441 -0.3172 -6.1577 15 1 6.2667 0.8192 -7.1106 16 1 7.6285 -1.0374 -6.3497 17 1 5.2133 -1.2476 -6.4040 18 6 1.8748 1.9946 1.3287 19 6 1.9132 3.5185 1.1976 20 1 2.8641 3.8261 0.7623 21 6 1.7444 4.1622 2.5806 22 8 1.7723 5.5846 2.4194 23 6 1.0171 6.1012 1.4118 24 6 0.7114 7.4541 1.4149 25 6 -0.0522 7.9937 0.3972 26 6 -0.5139 7.1868 -0.6262 27 6 -0.2142 5.8377 -0.6343 28 6 0.5503 5.2895 0.3848 29 8 0.8340 3.9585 0.3650 30 1 -0.3633 -1.0235 -0.0925 31 1 -0.3633 0.4316 0.9327 32 1 -0.3633 0.5918 -0.8401 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.7847 2.4695 -0.3493 36 1 4.0249 0.7737 0.1358 37 1 5.3747 1.9892 -2.3371 38 1 5.5049 0.3268 -1.7145 39 1 8.2107 0.5609 -4.2019 40 1 2.6913 1.6644 1.9708 41 1 0.9234 1.6914 1.7658 42 1 2.5595 3.8501 3.2334 43 1 0.7904 3.8599 3.0126 44 1 1.0700 8.0863 2.2136 45 1 -0.2893 9.0473 0.4018 46 1 -1.1100 7.6115 -1.4203 47 1 -0.5758 5.2098 -1.4351 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000248400165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:06 Heat of formation + Delta-G solvation = -21.804129 kcal Electronic energy + Delta-G solvation = -28468.203310 eV Core-core repulsion = 24616.686041 eV Total energy + Delta-G solvation = -3851.517270 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.33002 -38.69014 -37.63464 -37.15982 -35.74376 -33.65491 -32.42853 -31.91951 -30.71930 -30.00912 -28.76407 -27.02277 -25.50393 -23.63464 -23.30572 -22.72139 -21.73717 -20.98378 -20.55038 -18.73240 -17.65116 -16.98006 -16.71368 -16.49714 -15.62771 -15.52781 -15.22218 -14.97792 -14.61175 -14.47028 -14.36162 -14.31062 -13.91932 -13.72516 -13.52712 -13.12075 -12.85562 -12.60874 -12.31692 -12.10530 -11.98862 -11.90017 -11.83020 -11.68683 -11.42096 -11.26132 -11.18833 -11.09335 -10.99761 -10.77175 -10.66709 -10.51487 -10.40579 -10.05728 -9.54107 -9.23341 -8.69954 -8.46564 -8.26463 -8.09288 -6.10556 -4.13593 1.23673 1.26633 2.93081 3.12503 3.29450 3.36073 3.39185 3.65458 3.67771 3.81153 3.91242 4.23075 4.40493 4.57424 4.60582 4.62145 4.91101 4.92020 4.95083 5.01450 5.13435 5.17583 5.22270 5.27710 5.29952 5.35889 5.40100 5.46388 5.54085 5.67084 5.71683 5.79977 5.85870 5.94237 6.04336 6.07922 6.14889 6.30704 6.34385 6.40275 6.50842 6.56787 6.86172 7.08793 7.12243 7.40193 7.42749 7.51338 7.84755 8.22254 8.65147 8.91178 9.51980 11.00376 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013192 B = 0.003120 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.943267 B = 8971.226001 C = 9737.471681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.045 3.955 3 N -0.533 5.533 4 C 0.058 3.942 5 C 0.011 3.989 6 H 0.100 0.900 7 C 0.254 3.746 8 N -0.474 5.474 9 C 0.032 3.968 10 C -0.525 4.525 11 H 0.057 0.943 12 C 0.063 3.937 13 N -0.892 5.892 14 Si 0.891 3.109 15 H -0.280 1.280 16 H -0.285 1.285 17 H -0.272 1.272 18 C 0.064 3.936 19 C 0.057 3.943 20 H 0.086 0.914 21 C 0.027 3.973 22 O -0.307 6.307 23 C 0.042 3.958 24 C -0.116 4.116 25 C -0.124 4.124 26 C -0.116 4.116 27 C -0.112 4.112 28 C 0.060 3.940 29 O -0.278 6.278 30 H 0.055 0.945 31 H 0.048 0.952 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.025 0.975 38 H 0.036 0.964 39 H 0.262 0.738 40 H 0.063 0.937 41 H 0.086 0.914 42 H 0.121 0.879 43 H 0.076 0.924 44 H 0.131 0.869 45 H 0.129 0.871 46 H 0.129 0.871 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.524 5.805 16.389 22.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.082 4.082 3 N -0.257 5.257 4 C -0.070 4.070 5 C -0.010 4.010 6 H 0.118 0.882 7 C -0.064 4.064 8 N -0.151 5.151 9 C -0.007 4.007 10 C -0.564 4.564 11 H 0.075 0.925 12 C -0.139 4.139 13 N -0.530 5.530 14 Si 0.719 3.281 15 H -0.206 1.206 16 H -0.211 1.211 17 H -0.197 1.197 18 C -0.064 4.064 19 C -0.001 4.001 20 H 0.104 0.896 21 C -0.049 4.049 22 O -0.222 6.222 23 C -0.003 4.003 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.134 4.134 27 C -0.130 4.130 28 C 0.014 3.986 29 O -0.192 6.192 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.054 0.946 35 H 0.095 0.905 36 H 0.073 0.927 37 H 0.043 0.957 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.104 0.896 42 H 0.139 0.861 43 H 0.094 0.906 44 H 0.149 0.851 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.440 7.145 15.117 22.093 hybrid contribution 1.066 -1.188 -0.177 1.606 sum -13.374 5.957 14.940 20.918 Atomic orbital electron populations 1.21750 0.95062 1.01167 1.02206 1.22191 0.96063 0.88350 1.01604 1.61953 1.21235 1.18470 1.24020 1.22327 0.87470 1.02061 0.95153 1.19236 0.98773 0.93836 0.89194 0.88183 1.28753 0.91648 0.93437 0.92516 1.80970 1.11827 1.11225 1.11052 1.19168 0.85929 0.98545 0.97049 1.21130 0.92764 1.43879 0.98578 0.92496 1.24948 0.95738 0.95274 0.97979 1.69940 0.97817 1.48004 1.37289 0.86595 0.77483 0.79126 0.84901 1.20618 1.21111 1.19724 1.22034 1.02518 0.90448 0.91413 1.23225 0.90692 0.96055 0.90122 0.89624 1.23623 1.04388 0.79385 0.97533 1.86291 1.64530 1.22356 1.49005 1.18946 0.98441 0.93870 0.89064 1.20392 1.00458 0.92024 1.00624 1.20865 0.98918 0.99951 0.94466 1.20924 1.00811 0.92649 0.99035 1.20526 1.00186 0.95264 0.97062 1.19049 1.00379 0.84343 0.94786 1.86519 1.50147 1.18735 1.63807 0.92560 0.93329 0.91695 0.89630 0.94566 0.90521 0.92670 0.95661 0.94530 0.92806 0.91943 0.89560 0.86145 0.90590 0.85135 0.85337 0.85268 0.84757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.96 37.16 0.37 -1.16 16 2 C 0.05 0.51 5.55 -3.82 -0.02 0.49 16 3 N -0.53 -6.87 3.95 -234.63 -0.93 -7.80 16 4 C 0.06 0.85 4.15 -3.83 -0.02 0.83 16 5 C 0.01 0.21 2.16 -93.41 -0.20 0.01 16 6 H 0.10 1.73 6.08 -51.93 -0.32 1.41 16 7 C 0.25 5.40 13.67 -20.76 -0.28 5.12 16 8 N -0.47 -11.00 18.54 42.15 0.78 -10.22 16 9 C 0.03 0.73 4.42 -27.88 -0.12 0.61 16 10 C -0.53 -13.98 8.60 -34.44 -0.30 -14.27 16 11 H 0.06 1.51 7.59 -52.48 -0.40 1.12 16 12 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 13 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 14 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 17 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 18 C 0.06 0.66 4.53 -3.83 -0.02 0.64 16 19 C 0.06 0.68 3.08 -26.48 -0.08 0.59 16 20 H 0.09 1.15 6.81 -51.93 -0.35 0.80 16 21 C 0.03 0.26 6.56 37.41 0.25 0.51 16 22 O -0.31 -3.90 10.42 -32.86 -0.34 -4.24 16 23 C 0.04 0.56 6.49 -39.14 -0.25 0.31 16 24 C -0.12 -1.35 9.96 -39.42 -0.39 -1.74 16 25 C -0.12 -1.29 10.04 -39.59 -0.40 -1.68 16 26 C -0.12 -1.30 10.04 -39.59 -0.40 -1.70 16 27 C -0.11 -1.52 9.96 -39.43 -0.39 -1.92 16 28 C 0.06 0.88 6.49 -39.14 -0.25 0.62 16 29 O -0.28 -4.16 9.95 -32.86 -0.33 -4.49 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.47 6.89 -51.93 -0.36 0.11 16 32 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.09 1.04 5.82 -51.93 -0.30 0.74 16 34 H 0.04 0.35 8.00 -51.93 -0.42 -0.06 16 35 H 0.08 1.16 6.65 -51.92 -0.35 0.81 16 36 H 0.06 0.71 8.12 -51.93 -0.42 0.29 16 37 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 39 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.06 0.51 8.00 -51.93 -0.42 0.09 16 41 H 0.09 0.80 6.55 -51.92 -0.34 0.46 16 42 H 0.12 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 45 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 46 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 47 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 388.02 15.07 5.85 5.85 Total: -1.00 -32.40 388.02 -8.89 -41.29 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -7.03 Total: -0.84 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -2.61 Total: -11.11 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.59 Total: -42.76 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -0.67 Total: -8.73 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.40 -8.89 -41.29 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248400165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.484 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds