Wall clock time and date at job start Tue Mar 31 2020 17:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46906 * 109.46900 * 2 1 4 4 C 1.46899 * 110.99605 * 199.61253 * 3 2 1 5 5 C 1.52995 * 109.47282 * 66.04746 * 4 3 2 6 6 H 1.08998 * 109.47112 * 304.99792 * 5 4 3 7 7 C 1.47199 * 109.47257 * 64.99520 * 5 4 3 8 8 N 4.43042 * 98.62966 * 309.41135 * 2 1 3 9 9 C 1.53001 * 109.47285 * 184.99604 * 5 4 3 10 10 C 1.50697 * 109.47430 * 174.99770 * 9 5 4 11 11 H 1.08003 * 119.99704 * 0.02562 * 10 9 5 12 12 C 1.37876 * 120.00273 * 179.97438 * 10 9 5 13 13 N 1.31515 * 119.99662 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00066 * 180.02562 * 12 10 9 15 15 H 1.48504 * 109.47038 * 90.00377 * 14 12 10 16 16 H 1.48500 * 109.47199 * 210.00089 * 14 12 10 17 17 H 1.48500 * 109.47436 * 330.00319 * 14 12 10 18 18 C 1.46896 * 111.00002 * 75.65968 * 3 2 1 19 19 C 1.52996 * 109.47046 * 199.83594 * 18 3 2 20 20 H 1.09004 * 109.70705 * 299.89852 * 19 18 3 21 21 C 1.53481 * 109.74240 * 179.27973 * 19 18 3 22 22 O 1.43177 * 108.24719 * 180.53806 * 21 19 18 23 23 C 1.36109 * 116.71304 * 46.15921 * 22 21 19 24 24 C 1.38702 * 119.39465 * 162.89601 * 23 22 21 25 25 C 1.38198 * 120.06368 * 179.86933 * 24 23 22 26 26 C 1.38254 * 120.11461 * 0.02562 * 25 24 23 27 27 C 1.38197 * 120.11024 * 0.04977 * 26 25 24 28 28 C 1.38698 * 120.06882 * 0.02562 * 27 26 25 29 29 O 1.36106 * 119.38985 * 179.81605 * 28 27 26 30 30 H 1.09003 * 109.47067 * 174.83860 * 1 2 3 31 31 H 1.09001 * 109.47111 * 294.83166 * 1 2 3 32 32 H 1.08997 * 109.47154 * 54.83622 * 1 2 3 33 33 H 1.09000 * 109.46956 * 240.00086 * 2 1 3 34 34 H 1.09002 * 109.47266 * 119.99743 * 2 1 3 35 35 H 1.09007 * 109.46567 * 186.04320 * 4 3 2 36 36 H 1.08999 * 109.46896 * 306.04262 * 4 3 2 37 37 H 1.08999 * 109.47299 * 294.99920 * 9 5 4 38 38 H 1.09000 * 109.46754 * 55.00114 * 9 5 4 39 39 H 0.97005 * 119.99608 * 179.97438 * 13 12 10 40 40 H 1.09000 * 109.47309 * 79.83192 * 18 3 2 41 41 H 1.09008 * 109.46943 * 319.83373 * 18 3 2 42 42 H 1.08993 * 109.71413 * 60.84276 * 21 19 18 43 43 H 1.09002 * 109.70103 * 300.21867 * 21 19 18 44 44 H 1.07996 * 119.96717 * 359.83324 * 24 23 22 45 45 H 1.08003 * 119.93889 * 179.97438 * 25 24 23 46 46 H 1.08004 * 119.94337 * 180.02562 * 26 25 24 47 47 H 1.08002 * 119.96036 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 3.4131 1.4507 -0.4603 5 6 3.4838 1.0397 -1.9323 6 1 3.0308 0.0562 -2.0571 7 6 2.7562 2.0224 -2.7518 8 7 2.1948 2.7810 -3.3842 9 6 4.9467 0.9876 -2.3776 10 6 5.0239 0.4651 -3.7890 11 1 4.1200 0.1973 -4.3159 12 6 6.2485 0.3298 -4.4080 13 7 7.3492 0.6564 -3.7665 14 14 6.3441 -0.3172 -6.1577 15 1 6.2667 0.8192 -7.1106 16 1 7.6285 -1.0374 -6.3497 17 1 5.2133 -1.2476 -6.4040 18 6 1.8748 1.9946 1.3287 19 6 1.9132 3.5185 1.1976 20 1 2.8641 3.8261 0.7623 21 6 1.7444 4.1622 2.5806 22 8 1.7723 5.5846 2.4194 23 6 1.0171 6.1012 1.4118 24 6 0.7114 7.4541 1.4149 25 6 -0.0522 7.9937 0.3972 26 6 -0.5139 7.1868 -0.6262 27 6 -0.2142 5.8377 -0.6343 28 6 0.5503 5.2895 0.3848 29 8 0.8340 3.9585 0.3650 30 1 -0.3633 -1.0235 -0.0925 31 1 -0.3633 0.4316 0.9327 32 1 -0.3633 0.5918 -0.8401 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.7847 2.4695 -0.3493 36 1 4.0249 0.7737 0.1358 37 1 5.3747 1.9892 -2.3371 38 1 5.5049 0.3268 -1.7145 39 1 8.2107 0.5609 -4.2019 40 1 2.6913 1.6644 1.9708 41 1 0.9234 1.6914 1.7658 42 1 2.5595 3.8501 3.2334 43 1 0.7904 3.8599 3.0126 44 1 1.0700 8.0863 2.2136 45 1 -0.2893 9.0473 0.4018 46 1 -1.1100 7.6115 -1.4203 47 1 -0.5758 5.2098 -1.4351 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000248400165.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:05 Heat of formation + Delta-G solvation = -40.644129 kcal Electronic energy + Delta-G solvation = -28469.020274 eV Core-core repulsion = 24616.686041 eV Total energy + Delta-G solvation = -3852.334233 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.24346 -39.76689 -38.59436 -38.17546 -37.25150 -35.52353 -33.78261 -33.16994 -31.62955 -31.08486 -29.79369 -28.46794 -26.62524 -24.94097 -24.27983 -23.70148 -23.47521 -21.92304 -21.46764 -19.68715 -18.65992 -18.45655 -18.11593 -17.85864 -16.81263 -16.57359 -16.35648 -16.21345 -15.80688 -15.54772 -15.39250 -15.28825 -14.84411 -14.78019 -14.67293 -14.53884 -14.35529 -13.92160 -13.79721 -13.41917 -13.28641 -13.04250 -12.91877 -12.80542 -12.77374 -12.63757 -12.52403 -12.38674 -12.31578 -12.13916 -12.08378 -11.70219 -11.60985 -11.34112 -11.28383 -11.06312 -10.56768 -9.63466 -9.19430 -9.03943 -8.20885 -6.29002 0.29820 0.34145 1.38530 1.41126 1.50073 2.05216 2.08800 2.16577 2.27851 2.40264 2.74986 2.77204 3.14583 3.30060 3.38978 3.66660 3.73938 3.81101 4.04054 4.11969 4.21425 4.23364 4.24383 4.33585 4.43295 4.44738 4.48989 4.54453 4.62456 4.70301 4.74056 4.75425 4.80746 4.90318 4.94838 5.07857 5.19794 5.20691 5.22546 5.44118 5.44553 5.50475 5.59490 5.72220 5.77538 5.94121 6.09249 6.20352 6.21825 6.48073 6.82102 6.94999 7.39555 8.90025 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.013192 B = 0.003120 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2121.943267 B = 8971.226001 C = 9737.471681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.044 3.956 3 N -0.553 5.553 4 C 0.070 3.930 5 C 0.020 3.980 6 H 0.118 0.882 7 C 0.263 3.737 8 N -0.513 5.513 9 C 0.040 3.960 10 C -0.539 4.539 11 H 0.052 0.948 12 C 0.013 3.987 13 N -0.922 5.922 14 Si 0.947 3.053 15 H -0.285 1.285 16 H -0.277 1.277 17 H -0.264 1.264 18 C 0.069 3.931 19 C 0.051 3.949 20 H 0.062 0.938 21 C 0.029 3.971 22 O -0.319 6.319 23 C 0.026 3.974 24 C -0.122 4.122 25 C -0.117 4.117 26 C -0.116 4.116 27 C -0.137 4.137 28 C 0.033 3.967 29 O -0.303 6.303 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.035 0.965 33 H 0.074 0.926 34 H 0.062 0.938 35 H 0.066 0.934 36 H 0.079 0.921 37 H -0.003 1.003 38 H 0.038 0.962 39 H 0.264 0.736 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.153 0.847 43 H 0.088 0.912 44 H 0.151 0.849 45 H 0.164 0.836 46 H 0.153 0.847 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.130 5.504 18.058 23.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.083 4.083 3 N -0.278 5.278 4 C -0.058 4.058 5 C -0.001 4.001 6 H 0.135 0.865 7 C -0.053 4.053 8 N -0.191 5.191 9 C 0.001 3.999 10 C -0.577 4.577 11 H 0.070 0.930 12 C -0.186 4.186 13 N -0.562 5.562 14 Si 0.773 3.227 15 H -0.212 1.212 16 H -0.202 1.202 17 H -0.188 1.188 18 C -0.059 4.059 19 C -0.006 4.006 20 H 0.080 0.920 21 C -0.047 4.047 22 O -0.234 6.234 23 C -0.019 4.019 24 C -0.140 4.140 25 C -0.134 4.134 26 C -0.134 4.134 27 C -0.156 4.156 28 C -0.012 4.012 29 O -0.218 6.218 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.015 0.985 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.171 0.829 43 H 0.106 0.894 44 H 0.169 0.831 45 H 0.182 0.818 46 H 0.171 0.829 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.060 6.833 16.796 23.571 hybrid contribution 1.227 -1.054 -0.689 1.758 sum -13.833 5.779 16.106 22.004 Atomic orbital electron populations 1.21699 0.94694 1.01705 1.01490 1.22239 0.96284 0.87488 1.02248 1.61832 1.19900 1.19841 1.26203 1.22110 0.89263 1.01914 0.92544 1.19250 0.95460 0.94105 0.91326 0.86463 1.29371 0.91012 0.93077 0.91852 1.80960 1.13113 1.12585 1.12414 1.18975 0.88720 0.96507 0.95678 1.21531 0.92533 1.43382 1.00253 0.92959 1.25693 0.95660 0.95747 1.01530 1.70029 0.98239 1.49178 1.38782 0.85719 0.78018 0.78507 0.80504 1.21171 1.20179 1.18778 1.22129 1.04430 0.88911 0.90420 1.23384 0.88995 0.97376 0.90862 0.91968 1.23853 1.06358 0.77877 0.96591 1.86256 1.64532 1.23924 1.48675 1.19199 0.98842 0.94630 0.89208 1.20795 1.00210 0.91570 1.01464 1.21290 0.97442 1.01469 0.93242 1.21259 1.00546 0.91692 0.99938 1.20678 1.01324 0.96522 0.97103 1.19314 1.01491 0.84620 0.95778 1.86473 1.51087 1.19184 1.65054 0.90947 0.92292 0.94559 0.90787 0.91953 0.91589 0.90268 0.98490 0.94363 0.92689 0.88886 0.88108 0.82947 0.89371 0.83130 0.81834 0.82908 0.86201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.72 9.96 71.98 0.72 -2.01 16 2 C 0.04 0.91 5.55 86.30 0.48 1.39 16 3 N -0.55 -13.58 3.95 -896.22 -3.54 -17.12 16 4 C 0.07 1.98 4.15 86.30 0.36 2.34 16 5 C 0.02 0.74 2.16 -12.60 -0.03 0.72 16 6 H 0.12 3.95 6.08 -2.39 -0.01 3.93 16 7 C 0.26 11.46 13.67 89.44 1.22 12.68 16 8 N -0.51 -24.59 18.54 20.01 0.37 -24.21 16 9 C 0.04 1.86 4.42 29.85 0.13 1.99 16 10 C -0.54 -28.85 8.60 25.60 0.22 -28.63 16 11 H 0.05 2.79 7.59 -2.91 -0.02 2.77 16 12 C 0.01 0.70 5.46 84.65 0.46 1.16 16 13 N -0.92 -53.10 13.29 21.45 0.28 -52.82 16 14 Si 0.95 43.74 29.54 68.60 2.03 45.76 16 15 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 16 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 17 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 18 C 0.07 1.27 4.53 86.30 0.39 1.66 16 19 C 0.05 1.20 3.08 30.75 0.09 1.29 16 20 H 0.06 1.72 6.81 -2.38 -0.02 1.70 16 21 C 0.03 0.51 6.56 72.14 0.47 0.99 16 22 O -0.32 -7.85 10.42 -82.57 -0.86 -8.71 16 23 C 0.03 0.70 6.49 22.56 0.15 0.85 16 24 C -0.12 -2.68 9.96 22.37 0.22 -2.45 16 25 C -0.12 -2.21 10.04 22.26 0.22 -1.99 16 26 C -0.12 -2.54 10.04 22.26 0.22 -2.32 16 27 C -0.14 -3.93 9.96 22.37 0.22 -3.70 16 28 C 0.03 1.01 6.49 22.56 0.15 1.15 16 29 O -0.30 -9.38 9.95 -82.54 -0.82 -10.20 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.03 6.89 -2.39 -0.02 1.01 16 32 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 1.68 5.82 -2.39 -0.01 1.67 16 34 H 0.06 0.98 8.00 -2.39 -0.02 0.96 16 35 H 0.07 2.00 6.65 -2.38 -0.02 1.99 16 36 H 0.08 1.85 8.12 -2.39 -0.02 1.84 16 37 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 39 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 40 H 0.09 1.18 8.00 -2.39 -0.02 1.16 16 41 H 0.10 1.59 6.55 -2.38 -0.02 1.57 16 42 H 0.15 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 45 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 46 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 47 H 0.12 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -72.21 388.02 4.14 -68.07 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: 0.97 Total: 14.10 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 5.71 Total: -14.87 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -2.88 Total: -94.15 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -1.68 Total: -18.91 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -72.21 4.14 -68.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000248400165.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.427 kcal (2) G-P(sol) polarization free energy of solvation -72.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds