Wall clock time and date at job start Tue Mar 31 2020 17:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46904 * 2 1 4 4 C 1.46504 * 119.99958 * 274.85145 * 3 2 1 5 5 C 1.50705 * 109.47273 * 270.00623 * 4 3 2 6 6 H 1.08001 * 119.99622 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99976 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00161 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99977 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47247 * 59.99673 * 9 7 5 11 11 H 1.48501 * 109.47126 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47051 * 299.99529 * 9 7 5 13 13 C 1.34773 * 120.00451 * 94.85572 * 3 2 1 14 14 O 1.21675 * 120.00062 * 185.68837 * 13 3 2 15 15 C 1.46917 * 119.99820 * 5.68291 * 13 3 2 16 16 C 1.36368 * 126.76301 * 54.15085 * 15 13 3 17 17 N 1.35478 * 109.76581 * 179.97438 * 16 15 13 18 18 C 1.46496 * 124.78635 * 179.97438 * 17 16 15 19 19 C 1.53004 * 109.47352 * 265.02817 * 18 17 16 20 20 O 1.42904 * 109.46691 * 180.02562 * 19 18 17 21 21 C 1.42903 * 113.99567 * 180.02562 * 20 19 18 22 22 C 1.37959 * 110.42642 * 0.26685 * 17 16 15 23 23 C 1.39124 * 133.18878 * 180.47678 * 22 17 16 24 24 C 1.37766 * 119.92933 * 179.57223 * 23 22 17 25 25 C 1.38755 * 120.63551 * 359.70826 * 24 23 22 26 26 C 1.37753 * 120.30114 * 0.02562 * 25 24 23 27 27 C 1.39277 * 119.67149 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47475 * 300.00159 * 1 2 3 29 29 H 1.09005 * 109.46724 * 60.00574 * 1 2 3 30 30 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47029 * 239.99914 * 2 1 3 32 32 H 1.08998 * 109.46786 * 119.99778 * 2 1 3 33 33 H 1.09009 * 109.46920 * 30.00069 * 4 3 2 34 34 H 1.08999 * 109.47457 * 149.99853 * 4 3 2 35 35 H 0.96998 * 120.00073 * 180.02562 * 8 7 5 36 36 H 1.07997 * 125.12250 * 359.95887 * 16 15 13 37 37 H 1.09005 * 109.47114 * 145.03198 * 18 17 16 38 38 H 1.08999 * 109.47370 * 25.03170 * 18 17 16 39 39 H 1.08995 * 109.47166 * 60.00391 * 19 18 17 40 40 H 1.08993 * 109.46839 * 299.99847 * 19 18 17 41 41 H 1.08997 * 109.46969 * 179.97438 * 21 20 19 42 42 H 1.09001 * 109.47153 * 300.00014 * 21 20 19 43 43 H 1.08999 * 109.46902 * 60.00105 * 21 20 19 44 44 H 1.08002 * 120.03488 * 359.28186 * 23 22 17 45 45 H 1.08001 * 119.68078 * 179.69911 * 24 23 22 46 46 H 1.08002 * 119.84704 * 179.97438 * 25 24 23 47 47 H 1.08000 * 120.16355 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1613 2.1076 -1.2642 5 6 3.5450 1.8847 -1.8180 6 1 4.2478 1.2644 -1.2816 7 6 3.9141 2.4736 -3.0087 8 7 3.0585 3.2294 -3.6616 9 14 5.6296 2.1978 -3.6948 10 1 5.8409 0.7471 -3.9312 11 1 5.7744 2.9341 -4.9763 12 1 6.6370 2.6928 -2.7224 13 6 2.3361 1.9837 1.1629 14 8 2.6422 3.1613 1.1743 15 6 2.3127 1.2186 2.4170 16 6 2.9693 0.0512 2.6731 17 7 2.7064 -0.3540 3.9389 18 6 3.2433 -1.5695 4.5558 19 6 2.2329 -2.7082 4.4027 20 8 2.7564 -3.8936 5.0051 21 6 1.8861 -5.0236 4.9165 22 6 1.8567 0.5359 4.5627 23 6 1.2995 0.5871 5.8365 24 6 0.4715 1.6322 6.1830 25 6 0.1899 2.6424 5.2745 26 6 0.7363 2.6124 4.0103 27 6 1.5751 1.5618 3.6465 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.4216 1.7442 -1.9777 34 1 2.0064 3.1725 -1.0910 35 1 3.3180 3.6433 -4.4996 36 1 3.6032 -0.4718 1.9725 37 1 3.4286 -1.3882 5.6145 38 1 4.1771 -1.8440 4.0652 39 1 2.0475 -2.8896 3.3441 40 1 1.2991 -2.4338 4.8934 41 1 2.3558 -5.8824 5.3961 42 1 0.9447 -4.7973 5.4171 43 1 1.6943 -5.2532 3.8684 44 1 1.5121 -0.1941 6.5513 45 1 0.0372 1.6654 7.1713 46 1 -0.4613 3.4555 5.5596 47 1 0.5153 3.3997 3.3048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264019273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:22 Heat of formation + Delta-G solvation = -13.574174 kcal Electronic energy + Delta-G solvation = -28467.655148 eV Core-core repulsion = 24616.494756 eV Total energy + Delta-G solvation = -3851.160392 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.54218 -38.65469 -38.32812 -37.04596 -35.12516 -33.49297 -32.66211 -30.81465 -29.99323 -29.17477 -28.86505 -27.08035 -26.36487 -23.95303 -23.24386 -23.04803 -22.39544 -21.41066 -20.53285 -18.45210 -17.30012 -16.91604 -16.55437 -16.35261 -16.18845 -15.83953 -15.61005 -15.42187 -15.08872 -14.42482 -14.16439 -14.09759 -13.89947 -13.77510 -13.41671 -13.21848 -12.98322 -12.59668 -12.55576 -12.11789 -11.96552 -11.93100 -11.81980 -11.63465 -11.47331 -11.29162 -11.15846 -10.90893 -10.85383 -10.62266 -10.49402 -10.17133 -10.09916 -9.61402 -9.56009 -8.92829 -8.40192 -8.21749 -7.68158 -7.46933 -6.00923 -4.05933 1.10470 1.59947 2.31492 2.49270 3.33111 3.37944 3.40511 3.47331 3.65385 3.95517 4.11808 4.33658 4.48358 4.53961 4.63862 4.82681 4.86343 4.90290 4.93521 4.98423 5.10059 5.12337 5.24571 5.28740 5.32110 5.37067 5.46772 5.54121 5.62079 5.72887 5.75143 5.82870 5.91741 6.09017 6.14421 6.32131 6.45603 6.58426 6.59803 6.61719 6.73650 6.74937 7.13305 7.16946 7.21080 7.52300 7.62559 7.96422 8.27484 8.51883 8.93792 9.19355 9.59203 11.06957 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011374 B = 0.003563 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.056458 B = 7856.272678 C = 9220.737332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.105 3.895 3 N -0.592 5.592 4 C 0.247 3.753 5 C -0.527 4.527 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.579 3.421 14 O -0.538 6.538 15 C -0.193 4.193 16 C 0.086 3.914 17 N -0.473 5.473 18 C 0.113 3.887 19 C 0.044 3.956 20 O -0.390 6.390 21 C 0.033 3.967 22 C 0.092 3.908 23 C -0.130 4.130 24 C -0.102 4.102 25 C -0.146 4.146 26 C -0.061 4.061 27 C -0.067 4.067 28 H 0.051 0.949 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.032 0.968 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.177 0.823 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.089 0.911 42 H 0.043 0.957 43 H 0.044 0.956 44 H 0.117 0.883 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.078 -14.627 19.333 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.019 4.019 3 N -0.323 5.323 4 C 0.128 3.872 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.366 3.634 14 O -0.415 6.415 15 C -0.203 4.203 16 C -0.041 4.041 17 N -0.157 5.157 18 C -0.010 4.010 19 C -0.033 4.033 20 O -0.308 6.308 21 C -0.063 4.063 22 C -0.012 4.012 23 C -0.151 4.151 24 C -0.121 4.121 25 C -0.165 4.165 26 C -0.080 4.080 27 C -0.072 4.072 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.194 0.806 37 H 0.114 0.886 38 H 0.120 0.880 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.107 0.893 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.135 0.865 45 H 0.141 0.859 46 H 0.140 0.860 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.618 -14.181 19.337 24.629 hybrid contribution 0.709 -0.346 -0.668 1.034 sum -4.909 -14.527 18.669 24.159 Atomic orbital electron populations 1.22152 0.96870 1.01007 1.02328 1.21484 0.93741 0.84430 1.02287 1.48151 1.62984 1.13442 1.07766 1.19261 0.96633 0.93214 0.78081 1.21413 0.98559 1.30642 1.05996 0.92543 1.24925 0.97433 0.94938 0.96746 1.69924 1.35012 1.32043 1.16338 0.86578 0.84619 0.78127 0.78200 1.20300 1.21188 1.20177 1.17201 0.77754 0.86316 0.82165 1.90769 1.48425 1.15833 1.86492 1.20370 1.06576 0.97858 0.95497 1.21964 1.01056 0.95516 0.85574 1.43418 1.40816 1.19874 1.11638 1.21491 0.96962 0.81951 1.00560 1.22873 0.96837 0.85375 0.98255 1.87797 1.44548 1.18999 1.79455 1.22780 0.94197 0.88325 1.01027 1.18201 0.96553 0.91587 0.94839 1.19941 1.01320 1.00689 0.93133 1.20749 0.98128 0.93932 0.99325 1.20894 1.02325 0.99654 0.93669 1.20620 0.94617 0.96476 0.96258 1.18806 1.00267 0.95697 0.92444 0.92995 0.92125 0.92634 0.90450 0.91477 0.94995 0.93734 0.92681 0.80575 0.88619 0.88007 0.92227 0.92463 0.89279 0.93851 0.93694 0.86547 0.85923 0.85952 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.46 10.24 37.16 0.38 -2.08 16 2 C 0.10 1.76 6.06 -4.04 -0.02 1.73 16 3 N -0.59 -12.93 2.46 -176.51 -0.43 -13.36 16 4 C 0.25 6.55 5.23 -5.19 -0.03 6.53 16 5 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 8 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 9 Si 0.90 21.88 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.58 12.98 7.54 -12.75 -0.10 12.88 16 14 O -0.54 -14.47 16.66 5.21 0.09 -14.39 16 15 C -0.19 -3.43 5.20 -103.31 -0.54 -3.97 16 16 C 0.09 1.22 9.09 -16.62 -0.15 1.07 16 17 N -0.47 -5.68 2.74 -114.22 -0.31 -6.00 16 18 C 0.11 0.98 6.32 -4.04 -0.03 0.95 16 19 C 0.04 0.37 6.26 37.16 0.23 0.60 16 20 O -0.39 -3.38 10.70 -35.23 -0.38 -3.76 16 21 C 0.03 0.20 11.01 101.05 1.11 1.31 16 22 C 0.09 1.25 6.79 -83.97 -0.57 0.68 16 23 C -0.13 -1.47 9.97 -39.43 -0.39 -1.86 16 24 C -0.10 -1.10 10.01 -39.56 -0.40 -1.50 16 25 C -0.15 -1.79 10.03 -39.57 -0.40 -2.18 16 26 C -0.06 -0.94 10.09 -39.37 -0.40 -1.34 16 27 C -0.07 -1.10 6.36 -104.95 -0.67 -1.77 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.31 8.11 -51.93 -0.42 0.89 16 32 H 0.07 0.96 4.66 -51.93 -0.24 0.72 16 33 H 0.03 0.85 8.07 -51.92 -0.42 0.43 16 34 H 0.04 1.34 7.35 -51.93 -0.38 0.96 16 35 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 36 H 0.18 2.14 7.73 -52.49 -0.41 1.74 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.10 0.78 8.11 -51.93 -0.42 0.36 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 43 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 44 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 45 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.12 1.21 8.06 -52.49 -0.42 0.78 16 47 H 0.13 2.04 8.06 -52.49 -0.42 1.62 16 LS Contribution 397.42 15.07 5.99 5.99 Total: -1.00 -35.02 397.42 -9.04 -44.06 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -7.33 Total: -0.81 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -2.38 Total: -2.59 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: -0.01 Total: -45.36 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.29 Total: -18.15 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.02 -9.04 -44.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264019273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.486 kcal (2) G-P(sol) polarization free energy of solvation -35.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds