Wall clock time and date at job start Tue Mar 31 2020 17:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.46904 * 2 1 4 4 C 1.46504 * 119.99958 * 274.85145 * 3 2 1 5 5 C 1.50705 * 109.47273 * 270.00623 * 4 3 2 6 6 H 1.08001 * 119.99622 * 359.97438 * 5 4 3 7 7 C 1.37871 * 119.99976 * 180.02562 * 5 4 3 8 8 N 1.31515 * 120.00161 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99977 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47247 * 59.99673 * 9 7 5 11 11 H 1.48501 * 109.47126 * 179.97438 * 9 7 5 12 12 H 1.48505 * 109.47051 * 299.99529 * 9 7 5 13 13 C 1.34773 * 120.00451 * 94.85572 * 3 2 1 14 14 O 1.21675 * 120.00062 * 185.68837 * 13 3 2 15 15 C 1.46917 * 119.99820 * 5.68291 * 13 3 2 16 16 C 1.36368 * 126.76301 * 54.15085 * 15 13 3 17 17 N 1.35478 * 109.76581 * 179.97438 * 16 15 13 18 18 C 1.46496 * 124.78635 * 179.97438 * 17 16 15 19 19 C 1.53004 * 109.47352 * 265.02817 * 18 17 16 20 20 O 1.42904 * 109.46691 * 180.02562 * 19 18 17 21 21 C 1.42903 * 113.99567 * 180.02562 * 20 19 18 22 22 C 1.37959 * 110.42642 * 0.26685 * 17 16 15 23 23 C 1.39124 * 133.18878 * 180.47678 * 22 17 16 24 24 C 1.37766 * 119.92933 * 179.57223 * 23 22 17 25 25 C 1.38755 * 120.63551 * 359.70826 * 24 23 22 26 26 C 1.37753 * 120.30114 * 0.02562 * 25 24 23 27 27 C 1.39277 * 119.67149 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47475 * 300.00159 * 1 2 3 29 29 H 1.09005 * 109.46724 * 60.00574 * 1 2 3 30 30 H 1.08999 * 109.47296 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47029 * 239.99914 * 2 1 3 32 32 H 1.08998 * 109.46786 * 119.99778 * 2 1 3 33 33 H 1.09009 * 109.46920 * 30.00069 * 4 3 2 34 34 H 1.08999 * 109.47457 * 149.99853 * 4 3 2 35 35 H 0.96998 * 120.00073 * 180.02562 * 8 7 5 36 36 H 1.07997 * 125.12250 * 359.95887 * 16 15 13 37 37 H 1.09005 * 109.47114 * 145.03198 * 18 17 16 38 38 H 1.08999 * 109.47370 * 25.03170 * 18 17 16 39 39 H 1.08995 * 109.47166 * 60.00391 * 19 18 17 40 40 H 1.08993 * 109.46839 * 299.99847 * 19 18 17 41 41 H 1.08997 * 109.46969 * 179.97438 * 21 20 19 42 42 H 1.09001 * 109.47153 * 300.00014 * 21 20 19 43 43 H 1.08999 * 109.46902 * 60.00105 * 21 20 19 44 44 H 1.08002 * 120.03488 * 359.28186 * 23 22 17 45 45 H 1.08001 * 119.68078 * 179.69911 * 24 23 22 46 46 H 1.08002 * 119.84704 * 179.97438 * 25 24 23 47 47 H 1.08000 * 120.16355 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1613 2.1076 -1.2642 5 6 3.5450 1.8847 -1.8180 6 1 4.2478 1.2644 -1.2816 7 6 3.9141 2.4736 -3.0087 8 7 3.0585 3.2294 -3.6616 9 14 5.6296 2.1978 -3.6948 10 1 5.8409 0.7471 -3.9312 11 1 5.7744 2.9341 -4.9763 12 1 6.6370 2.6928 -2.7224 13 6 2.3361 1.9837 1.1629 14 8 2.6422 3.1613 1.1743 15 6 2.3127 1.2186 2.4170 16 6 2.9693 0.0512 2.6731 17 7 2.7064 -0.3540 3.9389 18 6 3.2433 -1.5695 4.5558 19 6 2.2329 -2.7082 4.4027 20 8 2.7564 -3.8936 5.0051 21 6 1.8861 -5.0236 4.9165 22 6 1.8567 0.5359 4.5627 23 6 1.2995 0.5871 5.8365 24 6 0.4715 1.6322 6.1830 25 6 0.1899 2.6424 5.2745 26 6 0.7363 2.6124 4.0103 27 6 1.5751 1.5618 3.6465 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.4216 1.7442 -1.9777 34 1 2.0064 3.1725 -1.0910 35 1 3.3180 3.6433 -4.4996 36 1 3.6032 -0.4718 1.9725 37 1 3.4286 -1.3882 5.6145 38 1 4.1771 -1.8440 4.0652 39 1 2.0475 -2.8896 3.3441 40 1 1.2991 -2.4338 4.8934 41 1 2.3558 -5.8824 5.3961 42 1 0.9447 -4.7973 5.4171 43 1 1.6943 -5.2532 3.8684 44 1 1.5121 -0.1941 6.5513 45 1 0.0372 1.6654 7.1713 46 1 -0.4613 3.4555 5.5596 47 1 0.5153 3.3997 3.3048 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264019273.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:21 Heat of formation + Delta-G solvation = -34.882568 kcal Electronic energy + Delta-G solvation = -28468.579149 eV Core-core repulsion = 24616.494756 eV Total energy + Delta-G solvation = -3852.084393 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.60984 -40.31180 -38.98033 -37.98996 -36.90481 -34.98079 -34.26943 -31.75401 -31.59269 -30.30561 -29.91792 -28.67839 -27.12017 -25.40104 -24.57743 -24.31019 -23.46798 -22.68748 -21.61123 -19.86374 -18.62750 -18.32914 -17.88097 -17.48248 -17.26971 -16.88225 -16.67114 -16.46332 -16.37054 -16.06109 -15.50489 -15.15213 -14.97409 -14.81839 -14.63954 -14.47480 -14.30368 -14.10804 -13.67632 -13.47783 -13.27556 -13.19967 -13.12955 -12.68615 -12.63201 -12.54684 -12.40777 -12.38513 -12.19601 -12.12444 -11.90231 -11.84444 -11.73285 -10.82556 -10.71955 -10.63848 -10.54361 -9.46751 -9.22473 -8.64800 -8.20745 -6.36756 0.05217 0.60629 1.15655 1.37306 1.42342 1.49561 1.52424 2.05204 2.32936 2.52134 2.86124 2.97239 3.08183 3.61630 3.70420 3.77135 3.88017 3.94849 4.12739 4.20116 4.27584 4.28432 4.32962 4.41767 4.51455 4.53406 4.56809 4.58786 4.68502 4.71705 4.72642 4.82152 4.88106 4.89436 4.94560 5.03773 5.10525 5.23160 5.33105 5.47991 5.57565 5.59034 5.69953 5.71966 5.88122 6.04726 6.06957 6.13822 6.26369 6.70831 6.79774 7.28263 7.48819 8.86224 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011374 B = 0.003563 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.056458 B = 7856.272678 C = 9220.737332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.101 3.899 3 N -0.595 5.595 4 C 0.264 3.736 5 C -0.544 4.544 6 H 0.058 0.942 7 C 0.006 3.994 8 N -0.930 5.930 9 Si 0.970 3.030 10 H -0.256 1.256 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.576 3.424 14 O -0.603 6.603 15 C -0.242 4.242 16 C 0.116 3.884 17 N -0.459 5.459 18 C 0.109 3.891 19 C 0.050 3.950 20 O -0.404 6.404 21 C 0.027 3.973 22 C 0.087 3.913 23 C -0.118 4.118 24 C -0.098 4.098 25 C -0.135 4.135 26 C -0.103 4.103 27 C -0.095 4.095 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.023 0.977 34 H -0.007 1.007 35 H 0.267 0.733 36 H 0.198 0.802 37 H 0.112 0.888 38 H 0.116 0.884 39 H 0.059 0.941 40 H 0.059 0.941 41 H 0.101 0.899 42 H 0.051 0.949 43 H 0.048 0.952 44 H 0.153 0.847 45 H 0.163 0.837 46 H 0.143 0.857 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.391 -18.333 22.109 29.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.021 4.021 3 N -0.325 5.325 4 C 0.142 3.858 5 C -0.583 4.583 6 H 0.076 0.924 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.794 3.206 10 H -0.181 1.181 11 H -0.204 1.204 12 H -0.203 1.203 13 C 0.366 3.634 14 O -0.485 6.485 15 C -0.252 4.252 16 C -0.015 4.015 17 N -0.141 5.141 18 C -0.011 4.011 19 C -0.028 4.028 20 O -0.323 6.323 21 C -0.069 4.069 22 C -0.017 4.017 23 C -0.138 4.138 24 C -0.117 4.117 25 C -0.154 4.154 26 C -0.122 4.122 27 C -0.100 4.100 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.114 0.886 31 H 0.096 0.904 32 H 0.115 0.885 33 H 0.041 0.959 34 H 0.011 0.989 35 H 0.076 0.924 36 H 0.215 0.785 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.119 0.881 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.170 0.830 45 H 0.181 0.819 46 H 0.161 0.839 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.963 -17.965 22.153 28.951 hybrid contribution 0.413 0.770 -1.409 1.658 sum -4.550 -17.195 20.745 27.326 Atomic orbital electron populations 1.22074 0.95341 1.03108 1.00940 1.21779 0.94985 0.81640 1.03677 1.48151 1.62962 1.15184 1.06237 1.18712 0.96062 0.90935 0.80053 1.21696 0.99185 1.30956 1.06434 0.92366 1.25908 1.01964 0.94349 0.97018 1.70064 1.37289 1.32810 1.16790 0.85430 0.78686 0.79157 0.77307 1.18063 1.20437 1.20312 1.17913 0.76031 0.85868 0.83601 1.90705 1.51342 1.18906 1.87596 1.19919 1.10975 1.00078 0.94266 1.22113 0.99024 0.93741 0.86592 1.43551 1.39612 1.20361 1.10615 1.21764 0.97499 0.80535 1.01348 1.22767 0.96519 0.85207 0.98306 1.87769 1.45453 1.19520 1.79545 1.22954 0.94417 0.87932 1.01610 1.18388 0.97042 0.91050 0.95252 1.20397 0.99722 1.01276 0.92386 1.21214 0.97324 0.92676 1.00438 1.21199 1.01239 1.00602 0.92374 1.20608 0.97223 0.96682 0.97658 1.18989 1.01078 0.97197 0.92704 0.93767 0.94132 0.88642 0.90411 0.88456 0.95939 0.98884 0.92399 0.78478 0.87006 0.86629 0.92284 0.92243 0.88064 0.93070 0.93333 0.82971 0.81909 0.83905 0.88739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.67 10.24 71.98 0.74 -3.93 16 2 C 0.10 3.42 6.06 86.38 0.52 3.95 16 3 N -0.60 -27.62 2.46 -830.58 -2.04 -29.66 16 4 C 0.26 15.03 5.23 85.63 0.45 15.48 16 5 C -0.54 -32.18 9.39 25.60 0.24 -31.94 16 6 H 0.06 3.34 7.81 -2.91 -0.02 3.31 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -57.72 13.29 21.45 0.28 -57.44 16 9 Si 0.97 45.43 29.54 68.60 2.03 47.46 16 10 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 11 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 C 0.58 27.78 7.54 86.52 0.65 28.43 16 14 O -0.60 -35.73 16.66 -4.27 -0.07 -35.80 16 15 C -0.24 -8.91 5.20 -19.02 -0.10 -9.01 16 16 C 0.12 3.11 9.09 83.69 0.76 3.87 16 17 N -0.46 -9.77 2.74 -515.28 -1.41 -11.18 16 18 C 0.11 1.46 6.32 86.38 0.55 2.01 16 19 C 0.05 0.63 6.26 71.98 0.45 1.08 16 20 O -0.40 -5.57 10.70 -148.98 -1.59 -7.17 16 21 C 0.03 0.24 11.01 113.37 1.25 1.49 16 22 C 0.09 2.16 6.79 38.92 0.26 2.42 16 23 C -0.12 -2.18 9.97 22.37 0.22 -1.95 16 24 C -0.10 -1.74 10.01 22.28 0.22 -1.52 16 25 C -0.14 -3.17 10.03 22.28 0.22 -2.94 16 26 C -0.10 -3.36 10.09 22.41 0.23 -3.13 16 27 C -0.10 -3.19 6.36 -20.08 -0.13 -3.32 16 28 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 30 H 0.09 2.08 8.14 -2.39 -0.02 2.07 16 31 H 0.08 2.62 8.11 -2.39 -0.02 2.60 16 32 H 0.10 2.68 4.66 -2.39 -0.01 2.66 16 33 H 0.02 1.30 8.07 -2.38 -0.02 1.28 16 34 H -0.01 -0.46 7.35 -2.39 -0.02 -0.48 16 35 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 36 H 0.20 4.34 7.73 -2.91 -0.02 4.31 16 37 H 0.11 1.22 8.14 -2.38 -0.02 1.20 16 38 H 0.12 1.30 8.11 -2.39 -0.02 1.28 16 39 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 45 H 0.16 1.64 8.06 -2.91 -0.02 1.62 16 46 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 47 H 0.09 3.52 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -83.78 397.42 5.14 -78.63 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.95 Total: 13.34 kcal Atomic # 6 Polarization: -5.18 SS G_CDS: 7.00 Total: 1.82 kcal Atomic # 7 Polarization: -95.11 SS G_CDS: -3.17 Total: -98.28 kcal Atomic # 8 Polarization: -41.30 SS G_CDS: -1.67 Total: -42.97 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -83.78 5.14 -78.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264019273.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.751 kcal (2) G-P(sol) polarization free energy of solvation -83.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds