Wall clock time and date at job start Tue Mar 31 2020 15:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 116.99940 * 2 1 4 4 C 1.38760 * 120.05430 * 0.24720 * 3 2 1 5 5 C 1.38119 * 119.94197 * 180.32015 * 4 3 2 6 6 C 1.38285 * 120.05766 * 359.67890 * 5 4 3 7 7 C 1.38247 * 120.11146 * 0.02960 * 6 5 4 8 8 C 1.38165 * 120.05308 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.02373 * 179.97438 * 8 7 6 10 10 H 1.09008 * 109.46977 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47043 * 299.99111 * 9 8 7 12 12 C 1.52997 * 109.47721 * 59.99577 * 9 8 7 13 13 C 1.50701 * 109.47212 * 174.99887 * 12 9 8 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 9 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 9 16 16 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.47162 * 90.00410 * 16 15 13 18 18 H 1.07998 * 119.99576 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00057 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99930 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47235 * 59.99855 * 21 19 17 23 23 H 1.48500 * 109.47168 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47142 * 299.99797 * 21 19 17 25 25 C 1.46490 * 120.00111 * 0.02562 * 15 13 12 26 26 C 1.53001 * 109.47305 * 89.99580 * 25 15 13 27 27 C 1.47208 * 109.47132 * 179.97438 * 26 25 15 28 28 N 8.06200 * 127.00014 * 81.06222 * 2 1 3 29 29 H 1.09000 * 109.47279 * 299.99942 * 1 2 3 30 30 H 1.09002 * 109.46964 * 60.00598 * 1 2 3 31 31 H 1.09001 * 109.46994 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.02787 * 0.03138 * 4 3 2 33 33 H 1.08003 * 119.97437 * 179.71069 * 5 4 3 34 34 H 1.08007 * 119.94656 * 180.02562 * 6 5 4 35 35 H 1.07994 * 119.96964 * 179.97438 * 7 6 5 36 36 H 1.08996 * 109.47271 * 300.01083 * 11 9 8 37 37 H 1.09008 * 109.46731 * 60.00465 * 11 9 8 38 38 H 1.08998 * 109.47430 * 180.02562 * 11 9 8 39 39 H 1.09002 * 109.47153 * 54.99889 * 12 9 8 40 40 H 1.09001 * 109.46832 * 295.00079 * 12 9 8 41 41 H 1.09000 * 109.47018 * 209.99971 * 16 15 13 42 42 H 1.09000 * 109.47828 * 330.00266 * 16 15 13 43 43 H 0.97001 * 119.99961 * 180.02562 * 20 19 17 44 44 H 1.09006 * 109.47028 * 209.99878 * 25 15 13 45 45 H 1.09002 * 109.47109 * 329.99455 * 25 15 13 46 46 H 1.09001 * 109.47263 * 299.99631 * 26 25 15 47 47 H 1.08996 * 109.47107 * 60.00334 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3754 0.0052 5 6 1.9207 3.6048 -0.0015 6 6 3.3017 3.6759 -0.0067 7 6 4.0559 2.5172 -0.0058 8 6 3.4310 1.2849 -0.0002 9 6 4.2537 0.0223 0.0002 10 1 3.5910 -0.8431 0.0054 11 6 5.1318 -0.0146 -1.2522 12 6 5.1411 -0.0080 1.2462 13 6 5.8721 -1.3242 1.3105 14 8 5.7006 -2.1560 0.4447 15 7 6.7171 -1.5767 2.3297 16 6 7.4281 -2.8560 2.3918 17 6 8.7424 -2.7362 1.6639 18 1 9.0199 -1.8008 1.2011 19 6 9.5903 -3.8208 1.5891 20 7 9.2524 -4.9598 2.1532 21 14 11.2195 -3.6721 0.6875 22 1 12.0443 -2.6154 1.3266 23 1 11.9408 -4.9686 0.7515 24 1 10.9691 -3.3140 -0.7317 25 6 6.9247 -0.5718 3.3751 26 6 5.9102 -0.7888 4.4997 27 6 6.1192 0.2207 5.5506 28 7 6.2808 1.0003 6.3604 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2128 2.3204 0.0097 33 1 1.3338 4.5114 -0.0022 34 1 3.7921 4.6382 -0.0115 35 1 5.1342 2.5754 -0.0102 36 1 4.4997 0.0070 -2.1399 37 1 5.7945 0.8508 -1.2570 38 1 5.7265 -0.9280 -1.2522 39 1 4.5221 0.1077 2.1360 40 1 5.8634 0.8069 1.1977 41 1 7.6124 -3.1191 3.4334 42 1 6.8225 -3.6315 1.9229 43 1 9.8492 -5.7227 2.1008 44 1 7.9348 -0.6656 3.7739 45 1 6.7917 0.4244 2.9531 46 1 4.9001 -0.6949 4.1010 47 1 6.0432 -1.7849 4.9218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264084322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:23 Heat of formation + Delta-G solvation = -30.802429 kcal Electronic energy + Delta-G solvation = -28205.011513 eV Core-core repulsion = 24353.104048 eV Total energy + Delta-G solvation = -3851.907465 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.51460 -39.29644 -37.61095 -36.85425 -35.45962 -34.67782 -32.84503 -30.79527 -30.27114 -30.04673 -28.31293 -27.34927 -26.51460 -23.96449 -23.79424 -22.59462 -22.13674 -20.15739 -18.30531 -18.18034 -17.55400 -16.72256 -16.42902 -16.28055 -15.87738 -15.47931 -15.41977 -14.81420 -14.65919 -14.52534 -14.17965 -13.97221 -13.82315 -13.48639 -13.23738 -12.95024 -12.73397 -12.47267 -12.38130 -12.32861 -12.06133 -12.03334 -11.85296 -11.74272 -11.41301 -11.27514 -11.26006 -10.98161 -10.93097 -10.80083 -10.62462 -10.54510 -10.40553 -10.15062 -9.68763 -8.98076 -8.81598 -8.44475 -8.23008 -7.78041 -6.06139 -4.10618 1.20403 1.33400 2.77002 2.85124 3.16090 3.31708 3.36094 3.36588 3.42729 3.61650 3.73684 4.24276 4.43610 4.61473 4.67193 4.86712 4.91936 4.94897 5.04482 5.12256 5.14816 5.18644 5.27681 5.28270 5.30497 5.33380 5.41547 5.52074 5.53717 5.66606 5.80885 5.89168 5.94286 5.99699 6.12724 6.17887 6.22294 6.31959 6.40288 6.67233 6.67782 6.75643 6.99619 7.28618 7.41264 7.48562 7.61137 7.90148 8.20929 8.33338 8.88291 9.06016 9.54854 11.01924 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011263 B = 0.003343 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.398185 B = 8374.202773 C = 9429.363324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.309 6.309 3 C 0.129 3.871 4 C -0.209 4.209 5 C -0.090 4.090 6 C -0.156 4.156 7 C -0.078 4.078 8 C -0.100 4.100 9 C -0.030 4.030 10 H 0.094 0.906 11 C -0.147 4.147 12 C -0.135 4.135 13 C 0.509 3.491 14 O -0.528 6.528 15 N -0.599 5.599 16 C 0.245 3.755 17 C -0.528 4.528 18 H 0.057 0.943 19 C 0.063 3.937 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.276 1.276 25 C 0.119 3.881 26 C -0.051 4.051 27 C 0.218 3.782 28 N -0.447 5.447 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.129 0.871 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.033 0.967 42 H 0.046 0.954 43 H 0.264 0.736 44 H 0.092 0.908 45 H 0.075 0.925 46 H 0.106 0.894 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.316 14.368 -2.479 21.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.222 6.222 3 C 0.083 3.917 4 C -0.228 4.228 5 C -0.108 4.108 6 C -0.175 4.175 7 C -0.096 4.096 8 C -0.100 4.100 9 C -0.048 4.048 10 H 0.112 0.888 11 C -0.204 4.204 12 C -0.175 4.175 13 C 0.296 3.704 14 O -0.405 6.405 15 N -0.331 5.331 16 C 0.126 3.874 17 C -0.566 4.566 18 H 0.076 0.924 19 C -0.140 4.140 20 N -0.533 5.533 21 Si 0.724 3.276 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.008 4.008 26 C -0.093 4.093 27 C -0.100 4.100 28 N -0.125 5.125 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.118 0.882 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.147 0.853 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.051 0.949 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.111 0.889 45 H 0.094 0.906 46 H 0.124 0.876 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -16.007 14.659 -1.705 21.772 hybrid contribution 0.575 0.007 -0.656 0.872 sum -15.433 14.666 -2.361 21.420 Atomic orbital electron populations 1.23047 0.78719 1.03980 1.01009 1.86140 1.20976 1.26627 1.88507 1.18876 0.91882 0.84219 0.96675 1.21190 0.99807 0.92433 1.09356 1.20876 0.94721 0.96783 0.98405 1.21039 0.93882 0.98370 1.04166 1.20920 1.00129 0.91014 0.97541 1.19388 0.90338 0.96048 1.04273 1.19725 0.95763 0.94665 0.94681 0.88782 1.21960 0.99303 1.03334 0.95836 1.21844 0.99145 0.97063 0.99465 1.20337 0.79697 0.88532 0.81873 1.90653 1.64223 1.48118 1.37489 1.48223 1.43454 1.18948 1.22436 1.19318 0.91403 0.79158 0.97509 1.21389 1.02520 0.97750 1.34979 0.92443 1.24909 0.98441 0.95089 0.95522 1.69911 1.37340 1.01818 1.44250 0.86595 0.83380 0.77203 0.80467 1.20284 1.21246 1.20165 1.21279 0.98984 0.92768 0.87765 1.19920 1.02906 0.95276 0.91183 1.29115 0.92968 0.93898 0.94010 1.81184 1.09015 1.11113 1.11144 0.92826 0.92882 0.88202 0.85747 0.86177 0.86087 0.85296 0.93325 0.93482 0.89564 0.89667 0.89439 0.94907 0.93578 0.92660 0.88913 0.90632 0.87560 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.31 -3.69 9.26 -19.44 -0.18 -3.87 16 3 C 0.13 1.53 6.66 -39.22 -0.26 1.27 16 4 C -0.21 -2.06 9.04 -39.43 -0.36 -2.42 16 5 C -0.09 -0.82 10.04 -39.61 -0.40 -1.22 16 6 C -0.16 -1.48 10.04 -39.56 -0.40 -1.88 16 7 C -0.08 -0.83 8.76 -39.60 -0.35 -1.18 16 8 C -0.10 -1.22 4.79 -104.48 -0.50 -1.72 16 9 C -0.03 -0.41 2.17 -91.77 -0.20 -0.61 16 10 H 0.09 1.50 6.81 -51.92 -0.35 1.15 16 11 C -0.15 -2.15 8.75 37.16 0.33 -1.82 16 12 C -0.13 -1.81 3.47 -27.88 -0.10 -1.91 16 13 C 0.51 9.28 7.39 -10.98 -0.08 9.20 16 14 O -0.53 -11.93 13.54 5.56 0.08 -11.86 16 15 N -0.60 -10.95 2.46 -175.06 -0.43 -11.38 16 16 C 0.25 5.80 5.16 -5.19 -0.03 5.78 16 17 C -0.53 -14.06 9.39 -34.44 -0.32 -14.38 16 18 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 19 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -25.59 13.29 55.43 0.74 -24.85 16 21 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.12 1.60 5.17 -4.05 -0.02 1.58 16 26 C -0.05 -0.56 6.03 -29.51 -0.18 -0.74 16 27 C 0.22 2.72 15.43 -20.77 -0.32 2.40 16 28 N -0.45 -6.71 18.54 42.14 0.78 -5.93 16 29 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 30 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.12 0.95 6.30 -52.49 -0.33 0.62 16 33 H 0.12 0.81 8.06 -52.48 -0.42 0.39 16 34 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 35 H 0.13 1.23 7.16 -52.49 -0.38 0.85 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.05 0.61 7.39 -51.92 -0.38 0.22 16 38 H 0.09 1.54 5.95 -51.93 -0.31 1.23 16 39 H 0.08 0.98 7.19 -51.93 -0.37 0.60 16 40 H 0.09 1.03 6.83 -51.93 -0.35 0.68 16 41 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 42 H 0.05 1.25 7.42 -51.93 -0.39 0.87 16 43 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 44 H 0.09 1.34 8.07 -51.93 -0.42 0.92 16 45 H 0.08 0.86 6.44 -51.93 -0.33 0.52 16 46 H 0.11 0.97 7.22 -51.93 -0.38 0.60 16 47 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 LS Contribution 392.35 15.07 5.91 5.91 Total: -1.00 -33.22 392.35 -7.28 -40.51 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.87 Total: 0.08 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -2.29 Total: -4.83 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: 1.09 Total: -42.17 kcal Atomic # 8 Polarization: -15.62 SS G_CDS: -0.10 Total: -15.73 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.22 -7.28 -40.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264084322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.704 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds