Wall clock time and date at job start Tue Mar 31 2020 15:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35903 * 116.99940 * 2 1 4 4 C 1.38760 * 120.05430 * 0.24720 * 3 2 1 5 5 C 1.38119 * 119.94197 * 180.32015 * 4 3 2 6 6 C 1.38285 * 120.05766 * 359.67890 * 5 4 3 7 7 C 1.38247 * 120.11146 * 0.02960 * 6 5 4 8 8 C 1.38165 * 120.05308 * 0.02562 * 7 6 5 9 9 C 1.50698 * 120.02373 * 179.97438 * 8 7 6 10 10 H 1.09008 * 109.46977 * 179.97438 * 9 8 7 11 11 C 1.53001 * 109.47043 * 299.99111 * 9 8 7 12 12 C 1.52997 * 109.47721 * 59.99577 * 9 8 7 13 13 C 1.50701 * 109.47212 * 174.99887 * 12 9 8 14 14 O 1.21280 * 119.99781 * 0.02562 * 13 12 9 15 15 N 1.34780 * 119.99795 * 179.97438 * 13 12 9 16 16 C 1.46497 * 119.99566 * 180.02562 * 15 13 12 17 17 C 1.50707 * 109.47162 * 90.00410 * 16 15 13 18 18 H 1.07998 * 119.99576 * 359.97438 * 17 16 15 19 19 C 1.37873 * 120.00057 * 179.97438 * 17 16 15 20 20 N 1.31516 * 119.99930 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99982 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.47235 * 59.99855 * 21 19 17 23 23 H 1.48500 * 109.47168 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47142 * 299.99797 * 21 19 17 25 25 C 1.46490 * 120.00111 * 0.02562 * 15 13 12 26 26 C 1.53001 * 109.47305 * 89.99580 * 25 15 13 27 27 C 1.47208 * 109.47132 * 179.97438 * 26 25 15 28 28 N 8.06200 * 127.00014 * 81.06222 * 2 1 3 29 29 H 1.09000 * 109.47279 * 299.99942 * 1 2 3 30 30 H 1.09002 * 109.46964 * 60.00598 * 1 2 3 31 31 H 1.09001 * 109.46994 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.02787 * 0.03138 * 4 3 2 33 33 H 1.08003 * 119.97437 * 179.71069 * 5 4 3 34 34 H 1.08007 * 119.94656 * 180.02562 * 6 5 4 35 35 H 1.07994 * 119.96964 * 179.97438 * 7 6 5 36 36 H 1.08996 * 109.47271 * 300.01083 * 11 9 8 37 37 H 1.09008 * 109.46731 * 60.00465 * 11 9 8 38 38 H 1.08998 * 109.47430 * 180.02562 * 11 9 8 39 39 H 1.09002 * 109.47153 * 54.99889 * 12 9 8 40 40 H 1.09001 * 109.46832 * 295.00079 * 12 9 8 41 41 H 1.09000 * 109.47018 * 209.99971 * 16 15 13 42 42 H 1.09000 * 109.47828 * 330.00266 * 16 15 13 43 43 H 0.97001 * 119.99961 * 180.02562 * 20 19 17 44 44 H 1.09006 * 109.47028 * 209.99878 * 25 15 13 45 45 H 1.09002 * 109.47109 * 329.99455 * 25 15 13 46 46 H 1.09001 * 109.47263 * 299.99631 * 26 25 15 47 47 H 1.08996 * 109.47107 * 60.00334 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2913 2.3754 0.0052 5 6 1.9207 3.6048 -0.0015 6 6 3.3017 3.6759 -0.0067 7 6 4.0559 2.5172 -0.0058 8 6 3.4310 1.2849 -0.0002 9 6 4.2537 0.0223 0.0002 10 1 3.5910 -0.8431 0.0054 11 6 5.1318 -0.0146 -1.2522 12 6 5.1411 -0.0080 1.2462 13 6 5.8721 -1.3242 1.3105 14 8 5.7006 -2.1560 0.4447 15 7 6.7171 -1.5767 2.3297 16 6 7.4281 -2.8560 2.3918 17 6 8.7424 -2.7362 1.6639 18 1 9.0199 -1.8008 1.2011 19 6 9.5903 -3.8208 1.5891 20 7 9.2524 -4.9598 2.1532 21 14 11.2195 -3.6721 0.6875 22 1 12.0443 -2.6154 1.3266 23 1 11.9408 -4.9686 0.7515 24 1 10.9691 -3.3140 -0.7317 25 6 6.9247 -0.5718 3.3751 26 6 5.9102 -0.7888 4.4997 27 6 6.1192 0.2207 5.5506 28 7 6.2808 1.0003 6.3604 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 0.2128 2.3204 0.0097 33 1 1.3338 4.5114 -0.0022 34 1 3.7921 4.6382 -0.0115 35 1 5.1342 2.5754 -0.0102 36 1 4.4997 0.0070 -2.1399 37 1 5.7945 0.8508 -1.2570 38 1 5.7265 -0.9280 -1.2522 39 1 4.5221 0.1077 2.1360 40 1 5.8634 0.8069 1.1977 41 1 7.6124 -3.1191 3.4334 42 1 6.8225 -3.6315 1.9229 43 1 9.8492 -5.7227 2.1008 44 1 7.9348 -0.6656 3.7739 45 1 6.7917 0.4244 2.9531 46 1 4.9001 -0.6949 4.1010 47 1 6.0432 -1.7849 4.9218 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264084322.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:38:22 Heat of formation + Delta-G solvation = -49.363957 kcal Electronic energy + Delta-G solvation = -28205.816401 eV Core-core repulsion = 24353.104048 eV Total energy + Delta-G solvation = -3852.712353 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.39197 -40.61478 -38.41492 -37.98371 -36.77982 -35.83404 -34.80207 -32.13577 -31.07156 -30.90438 -29.73930 -28.08994 -27.99212 -25.30609 -25.00599 -23.98019 -22.89967 -21.20207 -19.66084 -18.99055 -18.73448 -18.30234 -17.87734 -17.31626 -16.86821 -16.57234 -16.27752 -16.24313 -15.97161 -15.61530 -15.25520 -15.04757 -14.91433 -14.38063 -14.35261 -14.30923 -13.93651 -13.77293 -13.52496 -13.46188 -13.22596 -13.18489 -13.02110 -12.79048 -12.69472 -12.62236 -12.50969 -12.40492 -12.14062 -12.02908 -11.91739 -11.82008 -11.65360 -11.52193 -11.42185 -10.55742 -10.37337 -9.70154 -9.40240 -9.00418 -8.15005 -6.27234 0.45416 0.58666 1.41474 1.44429 1.51061 1.71018 1.85015 1.98434 2.34200 2.48271 2.49165 2.89740 3.13683 3.17941 3.70620 3.85484 4.00605 4.07364 4.14079 4.21195 4.22076 4.31818 4.35521 4.43184 4.51748 4.54099 4.60429 4.63183 4.72934 4.76836 4.84519 4.85701 4.91880 5.02779 5.10375 5.16503 5.22379 5.33897 5.38709 5.43782 5.56241 5.65349 5.67643 5.72959 5.93430 5.97535 6.16984 6.56455 6.61170 6.79724 6.87438 7.38375 7.61130 8.91442 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.011263 B = 0.003343 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2485.398185 B = 8374.202773 C = 9429.363324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.338 6.338 3 C 0.111 3.889 4 C -0.212 4.212 5 C -0.088 4.088 6 C -0.159 4.159 7 C -0.083 4.083 8 C -0.118 4.118 9 C -0.022 4.022 10 H 0.065 0.935 11 C -0.142 4.142 12 C -0.121 4.121 13 C 0.503 3.497 14 O -0.581 6.581 15 N -0.600 5.600 16 C 0.260 3.740 17 C -0.538 4.538 18 H 0.055 0.945 19 C 0.010 3.990 20 N -0.927 5.927 21 Si 0.957 3.043 22 H -0.263 1.263 23 H -0.283 1.283 24 H -0.279 1.279 25 C 0.114 3.886 26 C -0.039 4.039 27 C 0.246 3.754 28 N -0.488 5.488 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.144 0.856 35 H 0.139 0.861 36 H 0.048 0.952 37 H 0.064 0.936 38 H 0.047 0.953 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.031 0.969 42 H 0.002 0.998 43 H 0.265 0.735 44 H 0.083 0.917 45 H 0.107 0.893 46 H 0.133 0.867 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.016 17.517 -2.243 24.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.252 6.252 3 C 0.066 3.934 4 C -0.230 4.230 5 C -0.106 4.106 6 C -0.177 4.177 7 C -0.101 4.101 8 C -0.119 4.119 9 C -0.041 4.041 10 H 0.083 0.917 11 C -0.199 4.199 12 C -0.160 4.160 13 C 0.292 3.708 14 O -0.461 6.461 15 N -0.331 5.331 16 C 0.139 3.861 17 C -0.577 4.577 18 H 0.073 0.927 19 C -0.189 4.189 20 N -0.567 5.567 21 Si 0.782 3.218 22 H -0.187 1.187 23 H -0.209 1.209 24 H -0.204 1.204 25 C -0.010 4.010 26 C -0.080 4.080 27 C -0.071 4.071 28 N -0.166 5.166 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.126 0.874 32 H 0.162 0.838 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.157 0.843 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.131 0.869 40 H 0.131 0.869 41 H 0.049 0.951 42 H 0.020 0.980 43 H 0.073 0.927 44 H 0.101 0.899 45 H 0.125 0.875 46 H 0.150 0.850 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.716 17.854 -1.439 24.500 hybrid contribution 0.702 -0.965 -0.767 1.419 sum -16.014 16.888 -2.206 23.378 Atomic orbital electron populations 1.23281 0.76895 1.05062 1.02199 1.86106 1.23068 1.27313 1.88713 1.19112 0.92093 0.84860 0.97354 1.21454 1.00848 0.92026 1.08699 1.21267 0.95002 0.97483 0.96871 1.21349 0.94194 0.98879 1.03234 1.21080 1.00829 0.90773 0.97374 1.19254 0.90525 0.95516 1.06579 1.19518 0.95309 0.94970 0.94292 0.91677 1.21869 0.99310 1.02041 0.96689 1.21833 0.99369 0.94278 1.00570 1.21230 0.79171 0.89702 0.80673 1.90639 1.65829 1.50192 1.39402 1.48108 1.42933 1.18136 1.23889 1.18765 0.90073 0.80934 0.96311 1.21740 1.03607 0.97570 1.34779 0.92720 1.25729 1.01902 0.94866 0.96370 1.70025 1.38588 1.02482 1.45642 0.85628 0.79594 0.77593 0.78968 1.18734 1.20865 1.20443 1.21499 0.99411 0.92728 0.87399 1.19836 1.03390 0.94922 0.89870 1.29111 0.91625 0.93044 0.93328 1.81226 1.10427 1.12509 1.12412 0.91464 0.91733 0.87352 0.83818 0.83512 0.83840 0.84283 0.93271 0.91659 0.93389 0.86901 0.86875 0.95062 0.97974 0.92651 0.89850 0.87520 0.84958 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.34 -7.95 9.26 -92.46 -0.86 -8.80 16 3 C 0.11 2.48 6.66 22.51 0.15 2.63 16 4 C -0.21 -3.60 9.04 22.37 0.20 -3.40 16 5 C -0.09 -1.29 10.04 22.25 0.22 -1.07 16 6 C -0.16 -2.44 10.04 22.28 0.22 -2.21 16 7 C -0.08 -1.53 8.76 22.25 0.19 -1.34 16 8 C -0.12 -2.71 4.79 -19.77 -0.09 -2.80 16 9 C -0.02 -0.61 2.17 -11.54 -0.03 -0.63 16 10 H 0.06 2.17 6.81 -2.38 -0.02 2.15 16 11 C -0.14 -4.21 8.75 71.98 0.63 -3.58 16 12 C -0.12 -3.06 3.47 29.85 0.10 -2.95 16 13 C 0.50 18.51 7.39 87.66 0.65 19.16 16 14 O -0.58 -27.63 13.54 -3.03 -0.04 -27.67 16 15 N -0.60 -21.90 2.46 -826.16 -2.03 -23.93 16 16 C 0.26 12.75 5.16 85.64 0.44 13.19 16 17 C -0.54 -29.26 9.39 25.60 0.24 -29.02 16 18 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 19 C 0.01 0.57 5.46 84.65 0.46 1.03 16 20 N -0.93 -54.38 13.29 21.45 0.28 -54.10 16 21 Si 0.96 43.91 29.54 68.60 2.03 45.93 16 22 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 25 C 0.11 2.88 5.17 86.38 0.45 3.32 16 26 C -0.04 -0.76 6.03 28.79 0.17 -0.58 16 27 C 0.25 5.56 15.43 89.45 1.38 6.94 16 28 N -0.49 -13.77 18.54 20.00 0.37 -13.40 16 29 H 0.07 0.73 7.65 -2.39 -0.02 0.72 16 30 H 0.06 0.73 7.67 -2.39 -0.02 0.71 16 31 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.14 1.77 6.30 -2.91 -0.02 1.75 16 33 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 35 H 0.14 2.19 7.16 -2.91 -0.02 2.17 16 36 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.63 7.39 -2.38 -0.02 1.62 16 38 H 0.05 1.80 5.95 -2.39 -0.01 1.78 16 39 H 0.11 2.25 7.19 -2.39 -0.02 2.23 16 40 H 0.11 2.31 6.83 -2.39 -0.02 2.29 16 41 H 0.03 1.52 8.07 -2.39 -0.02 1.51 16 42 H 0.00 0.12 7.42 -2.39 -0.02 0.11 16 43 H 0.26 14.75 8.31 -92.71 -0.77 13.97 16 44 H 0.08 2.30 8.07 -2.38 -0.02 2.28 16 45 H 0.11 2.05 6.44 -2.39 -0.02 2.03 16 46 H 0.13 1.98 7.22 -2.39 -0.02 1.96 16 47 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -76.00 392.35 7.24 -68.75 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.98 Total: 13.14 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 6.51 Total: 0.08 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -1.37 Total: -91.43 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -0.90 Total: -36.47 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.93 kcal Total: -76.00 7.24 -68.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264084322.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.389 kcal (2) G-P(sol) polarization free energy of solvation -75.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds