Wall clock time and date at job start Tue Mar 31 2020 15:50:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46634 * 2 1 4 4 C 1.50704 * 109.47123 * 119.99216 * 2 1 3 5 5 H 1.08004 * 119.99579 * 119.99909 * 4 2 1 6 6 C 1.37875 * 120.00003 * 300.00763 * 4 2 1 7 7 N 1.31511 * 120.00240 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99457 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46948 * 89.99933 * 8 6 4 10 10 H 1.48507 * 109.46730 * 209.99447 * 8 6 4 11 11 H 1.48495 * 109.47242 * 329.99615 * 8 6 4 12 12 N 1.46498 * 109.47330 * 239.99603 * 2 1 3 13 13 C 1.34775 * 119.99751 * 85.00280 * 12 2 1 14 14 O 1.21284 * 120.00234 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00152 * 180.02562 * 13 12 2 16 16 H 1.09005 * 109.49506 * 300.00156 * 15 13 12 17 17 C 1.53029 * 109.50127 * 179.97438 * 15 13 12 18 18 C 1.53042 * 109.54054 * 178.71400 * 17 15 13 19 19 C 1.53187 * 109.33828 * 61.31651 * 18 17 15 20 20 N 1.46927 * 108.77828 * 305.38107 * 19 18 17 21 21 C 1.34771 * 120.63019 * 233.63198 * 20 19 18 22 22 O 1.21561 * 119.99659 * 174.36035 * 21 20 19 23 23 C 1.47845 * 120.00305 * 354.36310 * 21 20 19 24 24 C 1.39578 * 120.14394 * 324.42051 * 23 21 20 25 25 C 1.37952 * 119.85078 * 179.74366 * 24 23 21 26 26 C 1.38357 * 120.14622 * 0.53497 * 25 24 23 27 27 C 1.38358 * 120.29328 * 359.73685 * 26 25 24 28 28 C 1.37961 * 120.14681 * 359.97438 * 27 26 25 29 29 C 1.46932 * 118.73610 * 53.60786 * 20 19 18 30 30 H 1.08996 * 109.47341 * 300.00265 * 1 2 3 31 31 H 1.09001 * 109.47072 * 60.00705 * 1 2 3 32 32 H 1.09003 * 109.46634 * 179.97438 * 1 2 3 33 33 H 0.96999 * 119.99938 * 180.02562 * 7 6 4 34 34 H 0.96998 * 120.00256 * 264.72191 * 12 2 1 35 35 H 1.09001 * 109.46241 * 298.70231 * 17 15 13 36 36 H 1.09005 * 109.46405 * 58.65953 * 17 15 13 37 37 H 1.09004 * 109.46941 * 301.36171 * 18 17 15 38 38 H 1.09001 * 109.52533 * 181.30357 * 18 17 15 39 39 H 1.09007 * 109.58799 * 185.59296 * 19 18 17 40 40 H 1.09000 * 109.70564 * 65.24065 * 19 18 17 41 41 H 1.07995 * 120.06956 * 359.97438 * 24 23 21 42 42 H 1.07997 * 119.92761 * 180.27294 * 25 24 23 43 43 H 1.08003 * 119.85579 * 179.72277 * 26 25 24 44 44 H 1.08008 * 119.92914 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.07384 * 179.97438 * 28 27 26 46 46 H 1.08997 * 109.58276 * 186.60946 * 29 20 19 47 47 H 1.08999 * 109.69944 * 66.25151 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2391 2.4828 7 7 0.9433 0.8303 2.6034 8 14 2.3213 -1.1201 4.0080 9 1 3.6295 -0.5455 4.4124 10 1 1.3430 -0.9489 5.1121 11 1 2.4858 -2.5659 3.7121 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0183 -2.3570 14 8 1.8583 1.1583 -2.4117 15 6 2.6490 -0.7289 -3.5877 16 1 3.6481 -1.1217 -3.3989 17 6 2.7003 0.2537 -4.7597 18 6 3.2401 -0.4589 -6.0019 19 6 2.3001 -1.6093 -6.3754 20 7 2.1315 -2.4814 -5.2050 21 6 2.3666 -3.8053 -5.2956 22 8 2.3236 -4.4998 -4.2988 23 6 2.6769 -4.4130 -6.6071 24 6 2.0609 -3.9346 -7.7646 25 6 2.3589 -4.5026 -8.9860 26 6 3.2578 -5.5516 -9.0637 27 6 3.8677 -6.0343 -7.9194 28 6 3.5830 -5.4713 -6.6924 29 6 1.7022 -1.8825 -3.9338 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7092 1.1620 3.4843 34 1 2.2529 -1.6308 -1.1515 35 1 1.6972 0.6283 -4.9637 36 1 3.3545 1.0879 -4.5060 37 1 4.2336 -0.8547 -5.7907 38 1 3.2983 0.2470 -6.8304 39 1 2.7306 -2.1807 -7.1978 40 1 1.3315 -1.2097 -6.6759 41 1 1.3554 -3.1191 -7.7046 42 1 1.8863 -4.1305 -9.8829 43 1 3.4843 -5.9957 -10.0217 44 1 4.5681 -6.8536 -7.9868 45 1 4.0594 -5.8493 -5.8000 46 1 1.7384 -2.6340 -3.1452 47 1 0.6849 -1.5036 -4.0312 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264590604.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:09 Heat of formation + Delta-G solvation = -46.416449 kcal Electronic energy + Delta-G solvation = -28194.693831 eV Core-core repulsion = 24342.109291 eV Total energy + Delta-G solvation = -3852.584540 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.91594 -39.41213 -38.43635 -37.08492 -34.81431 -33.28194 -32.48545 -31.80109 -31.35543 -30.84660 -28.65853 -26.02370 -25.24051 -24.48462 -23.37886 -22.76190 -21.81031 -20.53106 -19.67363 -19.22577 -17.82017 -17.00247 -16.88176 -16.30137 -15.68668 -15.62960 -15.26334 -15.01697 -14.90510 -14.62778 -14.18089 -14.02539 -13.84887 -13.52989 -13.46731 -13.27738 -13.10623 -12.79305 -12.51948 -12.36135 -12.04105 -11.66030 -11.56982 -11.42232 -11.14491 -11.00200 -10.95254 -10.94512 -10.72207 -10.62375 -10.28898 -10.21037 -10.08319 -9.35357 -9.24794 -9.06970 -9.02286 -8.75466 -8.52271 -7.89997 -6.10097 -4.19033 0.58457 0.96636 2.53447 2.71524 3.27006 3.33415 3.35713 3.38828 3.44765 4.05071 4.16296 4.38559 4.45836 4.54118 4.65276 4.70492 4.76510 4.78026 4.98708 5.00275 5.09424 5.13592 5.22283 5.27431 5.38424 5.43104 5.58179 5.59994 5.61952 5.72568 5.77325 5.89950 5.94061 6.01823 6.06309 6.17123 6.28813 6.34255 6.49449 6.84537 6.98053 7.16854 7.17834 7.46723 7.57912 7.71931 7.93279 7.95548 8.17061 8.67911 8.79940 9.12421 9.48434 10.95883 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018823 B = 0.002633 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.172376 B =10631.604113 C =11643.367046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.707 5.707 13 C 0.508 3.492 14 O -0.552 6.552 15 C -0.123 4.123 16 H 0.095 0.905 17 C -0.099 4.099 18 C -0.135 4.135 19 C 0.091 3.909 20 N -0.603 5.603 21 C 0.558 3.442 22 O -0.530 6.530 23 C -0.127 4.127 24 C -0.093 4.093 25 C -0.128 4.128 26 C -0.099 4.099 27 C -0.126 4.126 28 C -0.065 4.065 29 C 0.123 3.877 30 H 0.090 0.910 31 H 0.014 0.986 32 H 0.027 0.973 33 H 0.264 0.736 34 H 0.390 0.610 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.098 0.902 40 H 0.073 0.927 41 H 0.135 0.865 42 H 0.129 0.871 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.133 0.867 46 H 0.100 0.900 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.391 -9.820 -25.780 27.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.571 4.571 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.198 1.198 12 N -0.354 5.354 13 C 0.291 3.709 14 O -0.431 6.431 15 C -0.146 4.146 16 H 0.113 0.887 17 C -0.137 4.137 18 C -0.173 4.173 19 C -0.032 4.032 20 N -0.336 5.336 21 C 0.346 3.654 22 O -0.407 6.407 23 C -0.130 4.130 24 C -0.111 4.111 25 C -0.146 4.146 26 C -0.117 4.117 27 C -0.144 4.144 28 C -0.084 4.084 29 C 0.000 4.000 30 H 0.109 0.891 31 H 0.033 0.967 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.222 0.778 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.091 0.909 41 H 0.153 0.847 42 H 0.147 0.853 43 H 0.144 0.856 44 H 0.147 0.853 45 H 0.151 0.849 46 H 0.119 0.881 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.043 -9.215 -25.077 27.020 hybrid contribution 0.426 -0.839 0.897 1.300 sum 4.469 -10.054 -24.180 26.565 Atomic orbital electron populations 1.22070 0.98427 0.99146 1.00854 1.18747 0.91055 0.93924 0.80063 0.93412 1.21234 1.32368 1.13199 0.90346 0.92061 1.24884 0.94799 0.94972 0.99057 1.69902 1.35920 1.22504 1.23843 0.86449 0.78565 0.79940 0.82173 1.20585 1.21073 1.19788 1.46602 1.64523 1.13694 1.10601 1.20159 0.78801 0.87410 0.84504 1.90653 1.51245 1.16027 1.85201 1.21728 1.01055 0.96653 0.95140 0.88688 1.21312 1.02824 0.97253 0.92284 1.21971 0.99282 0.97225 0.98841 1.22314 1.00308 0.92258 0.88281 1.47977 1.67303 1.06593 1.11743 1.18397 0.76738 0.81696 0.88546 1.90817 1.51320 1.61149 1.37428 1.19931 1.00975 0.98942 0.93129 1.21545 0.98896 0.98949 0.91757 1.21131 0.98872 0.97029 0.97604 1.21372 0.95736 0.95966 0.98675 1.21168 1.00581 1.00464 0.92237 1.21267 0.95378 0.93292 0.98421 1.21580 0.97253 0.95180 0.85962 0.89150 0.96703 0.95425 0.92610 0.77784 0.90932 0.90604 0.91398 0.90236 0.88446 0.90863 0.84744 0.85340 0.85626 0.85313 0.84937 0.88126 0.90565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 2 C 0.26 6.81 2.56 -69.08 -0.18 6.63 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 4 C -0.53 -14.42 8.73 -34.44 -0.30 -14.72 16 5 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -25.21 11.32 55.43 0.63 -24.59 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.05 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.71 -14.97 4.98 -54.93 -0.27 -15.25 16 13 C 0.51 10.00 7.12 -10.98 -0.08 9.92 16 14 O -0.55 -12.93 15.64 5.55 0.09 -12.84 16 15 C -0.12 -1.79 2.67 -91.66 -0.25 -2.03 16 16 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 17 C -0.10 -1.23 4.46 -26.69 -0.12 -1.35 16 18 C -0.13 -1.20 6.08 -26.61 -0.16 -1.36 16 19 C 0.09 0.76 4.78 -3.71 -0.02 0.75 16 20 N -0.60 -7.03 2.97 -173.88 -0.52 -7.54 16 21 C 0.56 7.33 7.38 -12.33 -0.09 7.23 16 22 O -0.53 -8.97 16.25 5.31 0.09 -8.89 16 23 C -0.13 -1.31 5.29 -104.97 -0.56 -1.86 16 24 C -0.09 -0.72 7.36 -39.19 -0.29 -1.01 16 25 C -0.13 -0.80 10.03 -39.64 -0.40 -1.20 16 26 C -0.10 -0.61 10.04 -39.49 -0.40 -1.01 16 27 C -0.13 -0.90 10.03 -39.64 -0.40 -1.30 16 28 C -0.06 -0.61 9.61 -39.18 -0.38 -0.99 16 29 C 0.12 1.67 5.58 -3.71 -0.02 1.65 16 30 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 31 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 34 H 0.39 7.45 8.09 -40.82 -0.33 7.12 16 35 H 0.07 0.94 8.13 -51.93 -0.42 0.52 16 36 H 0.08 1.02 8.07 -51.93 -0.42 0.60 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.10 0.68 4.46 -51.92 -0.23 0.45 16 40 H 0.07 0.53 8.05 -51.93 -0.42 0.11 16 41 H 0.13 0.86 6.06 -52.49 -0.32 0.54 16 42 H 0.13 0.50 8.06 -52.49 -0.42 0.08 16 43 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 44 H 0.13 0.65 8.06 -52.48 -0.42 0.22 16 45 H 0.13 1.28 8.01 -52.49 -0.42 0.86 16 46 H 0.10 1.52 6.60 -51.93 -0.34 1.18 16 47 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -33.32 378.50 -9.64 -42.96 By element: Atomic # 1 Polarization: 13.64 SS G_CDS: -6.96 Total: 6.68 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -3.37 Total: -2.28 kcal Atomic # 7 Polarization: -47.22 SS G_CDS: -0.16 Total: -47.38 kcal Atomic # 8 Polarization: -21.90 SS G_CDS: 0.17 Total: -21.73 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.32 -9.64 -42.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264590604.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.461 kcal (2) G-P(sol) polarization free energy of solvation -33.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds