Wall clock time and date at job start Tue Mar 31 2020 15:50:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46634 * 2 1 4 4 C 1.50704 * 109.47123 * 119.99216 * 2 1 3 5 5 H 1.08004 * 119.99579 * 119.99909 * 4 2 1 6 6 C 1.37875 * 120.00003 * 300.00763 * 4 2 1 7 7 N 1.31511 * 120.00240 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99457 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.46948 * 89.99933 * 8 6 4 10 10 H 1.48507 * 109.46730 * 209.99447 * 8 6 4 11 11 H 1.48495 * 109.47242 * 329.99615 * 8 6 4 12 12 N 1.46498 * 109.47330 * 239.99603 * 2 1 3 13 13 C 1.34775 * 119.99751 * 85.00280 * 12 2 1 14 14 O 1.21284 * 120.00234 * 359.97438 * 13 12 2 15 15 C 1.50703 * 120.00152 * 180.02562 * 13 12 2 16 16 H 1.09005 * 109.49506 * 300.00156 * 15 13 12 17 17 C 1.53029 * 109.50127 * 179.97438 * 15 13 12 18 18 C 1.53042 * 109.54054 * 178.71400 * 17 15 13 19 19 C 1.53187 * 109.33828 * 61.31651 * 18 17 15 20 20 N 1.46927 * 108.77828 * 305.38107 * 19 18 17 21 21 C 1.34771 * 120.63019 * 233.63198 * 20 19 18 22 22 O 1.21561 * 119.99659 * 174.36035 * 21 20 19 23 23 C 1.47845 * 120.00305 * 354.36310 * 21 20 19 24 24 C 1.39578 * 120.14394 * 324.42051 * 23 21 20 25 25 C 1.37952 * 119.85078 * 179.74366 * 24 23 21 26 26 C 1.38357 * 120.14622 * 0.53497 * 25 24 23 27 27 C 1.38358 * 120.29328 * 359.73685 * 26 25 24 28 28 C 1.37961 * 120.14681 * 359.97438 * 27 26 25 29 29 C 1.46932 * 118.73610 * 53.60786 * 20 19 18 30 30 H 1.08996 * 109.47341 * 300.00265 * 1 2 3 31 31 H 1.09001 * 109.47072 * 60.00705 * 1 2 3 32 32 H 1.09003 * 109.46634 * 179.97438 * 1 2 3 33 33 H 0.96999 * 119.99938 * 180.02562 * 7 6 4 34 34 H 0.96998 * 120.00256 * 264.72191 * 12 2 1 35 35 H 1.09001 * 109.46241 * 298.70231 * 17 15 13 36 36 H 1.09005 * 109.46405 * 58.65953 * 17 15 13 37 37 H 1.09004 * 109.46941 * 301.36171 * 18 17 15 38 38 H 1.09001 * 109.52533 * 181.30357 * 18 17 15 39 39 H 1.09007 * 109.58799 * 185.59296 * 19 18 17 40 40 H 1.09000 * 109.70564 * 65.24065 * 19 18 17 41 41 H 1.07995 * 120.06956 * 359.97438 * 24 23 21 42 42 H 1.07997 * 119.92761 * 180.27294 * 25 24 23 43 43 H 1.08003 * 119.85579 * 179.72277 * 26 25 24 44 44 H 1.08008 * 119.92914 * 179.97438 * 27 26 25 45 45 H 1.07998 * 120.07384 * 179.97438 * 28 27 26 46 46 H 1.08997 * 109.58276 * 186.60946 * 29 20 19 47 47 H 1.08999 * 109.69944 * 66.25151 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6991 -0.2391 2.4828 7 7 0.9433 0.8303 2.6034 8 14 2.3213 -1.1201 4.0080 9 1 3.6295 -0.5455 4.4124 10 1 1.3430 -0.9489 5.1121 11 1 2.4858 -2.5659 3.7121 12 7 2.0184 -0.6907 -1.1961 13 6 2.1471 -0.0183 -2.3570 14 8 1.8583 1.1583 -2.4117 15 6 2.6490 -0.7289 -3.5877 16 1 3.6481 -1.1217 -3.3989 17 6 2.7003 0.2537 -4.7597 18 6 3.2401 -0.4589 -6.0019 19 6 2.3001 -1.6093 -6.3754 20 7 2.1315 -2.4814 -5.2050 21 6 2.3666 -3.8053 -5.2956 22 8 2.3236 -4.4998 -4.2988 23 6 2.6769 -4.4130 -6.6071 24 6 2.0609 -3.9346 -7.7646 25 6 2.3589 -4.5026 -8.9860 26 6 3.2578 -5.5516 -9.0637 27 6 3.8677 -6.0343 -7.9194 28 6 3.5830 -5.4713 -6.6924 29 6 1.7022 -1.8825 -3.9338 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7092 1.1620 3.4843 34 1 2.2529 -1.6308 -1.1515 35 1 1.6972 0.6283 -4.9637 36 1 3.3545 1.0879 -4.5060 37 1 4.2336 -0.8547 -5.7907 38 1 3.2983 0.2470 -6.8304 39 1 2.7306 -2.1807 -7.1978 40 1 1.3315 -1.2097 -6.6759 41 1 1.3554 -3.1191 -7.7046 42 1 1.8863 -4.1305 -9.8829 43 1 3.4843 -5.9957 -10.0217 44 1 4.5681 -6.8536 -7.9868 45 1 4.0594 -5.8493 -5.8000 46 1 1.7384 -2.6340 -3.1452 47 1 0.6849 -1.5036 -4.0312 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264590604.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:08 Heat of formation + Delta-G solvation = -67.428863 kcal Electronic energy + Delta-G solvation = -28195.604998 eV Core-core repulsion = 24342.109291 eV Total energy + Delta-G solvation = -3853.495706 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.86737 -40.75729 -39.31235 -38.21697 -36.74377 -34.50029 -34.20775 -32.78090 -31.92880 -31.77700 -30.46004 -27.37708 -26.93497 -25.62074 -24.11655 -23.45439 -23.13399 -21.92373 -21.04782 -20.42380 -19.09426 -18.32802 -17.67006 -17.46504 -17.19062 -17.12174 -16.55062 -16.08969 -16.02797 -15.62561 -15.36188 -14.95901 -14.84896 -14.82598 -14.48063 -14.40162 -14.30467 -14.09892 -13.80320 -13.58578 -13.36052 -13.03033 -12.90162 -12.79558 -12.68335 -12.41710 -12.29831 -12.17000 -12.10932 -11.99101 -11.81643 -11.67275 -11.14237 -11.07691 -10.72007 -10.58646 -9.98433 -9.84438 -9.80456 -9.70112 -8.20776 -6.38146 -0.04831 0.42979 1.41855 1.42289 1.53378 1.54935 1.74610 1.90560 2.32826 2.58785 2.84338 3.09224 3.36585 3.67731 3.71239 3.78485 3.94877 4.00424 4.04966 4.12776 4.23987 4.26887 4.44638 4.51117 4.51741 4.57154 4.67344 4.71561 4.75698 4.81929 4.89377 4.90750 5.03155 5.06319 5.09278 5.15838 5.32825 5.36432 5.39861 5.42925 5.46682 5.55142 5.57235 5.65394 5.85949 5.98295 6.07084 6.27346 6.68898 6.89460 6.99366 7.28264 7.47482 8.85453 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.018823 B = 0.002633 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1487.172376 B =10631.604113 C =11643.367046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.270 3.730 3 H 0.001 0.999 4 C -0.550 4.550 5 H 0.068 0.932 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.971 3.029 9 H -0.276 1.276 10 H -0.281 1.281 11 H -0.264 1.264 12 N -0.706 5.706 13 C 0.506 3.494 14 O -0.591 6.591 15 C -0.108 4.108 16 H 0.102 0.898 17 C -0.097 4.097 18 C -0.125 4.125 19 C 0.087 3.913 20 N -0.599 5.599 21 C 0.553 3.447 22 O -0.582 6.582 23 C -0.149 4.149 24 C -0.093 4.093 25 C -0.123 4.123 26 C -0.093 4.093 27 C -0.129 4.129 28 C -0.086 4.086 29 C 0.128 3.872 30 H 0.068 0.932 31 H 0.015 0.985 32 H 0.037 0.963 33 H 0.266 0.734 34 H 0.401 0.599 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.067 0.933 38 H 0.111 0.889 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.150 0.850 42 H 0.160 0.840 43 H 0.156 0.844 44 H 0.148 0.852 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.037 -11.236 -29.001 31.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.167 3.833 3 H 0.019 0.981 4 C -0.588 4.588 5 H 0.086 0.914 6 C -0.184 4.184 7 N -0.553 5.553 8 Si 0.796 3.204 9 H -0.202 1.202 10 H -0.206 1.206 11 H -0.188 1.188 12 N -0.355 5.355 13 C 0.292 3.708 14 O -0.472 6.472 15 C -0.130 4.130 16 H 0.120 0.880 17 C -0.135 4.135 18 C -0.163 4.163 19 C -0.034 4.034 20 N -0.330 5.330 21 C 0.344 3.656 22 O -0.463 6.463 23 C -0.152 4.152 24 C -0.112 4.112 25 C -0.141 4.141 26 C -0.111 4.111 27 C -0.146 4.146 28 C -0.105 4.105 29 C 0.005 3.995 30 H 0.086 0.914 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.076 0.924 34 H 0.235 0.765 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.129 0.871 39 H 0.138 0.862 40 H 0.112 0.888 41 H 0.167 0.833 42 H 0.178 0.822 43 H 0.174 0.826 44 H 0.165 0.835 45 H 0.134 0.866 46 H 0.100 0.900 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.704 -10.634 -28.353 30.645 hybrid contribution 0.231 -0.374 1.804 1.857 sum 4.935 -11.009 -26.549 29.161 Atomic orbital electron populations 1.21882 0.98126 0.99354 0.99745 1.18355 0.91246 0.91875 0.81833 0.98125 1.21535 1.32694 1.13521 0.91050 0.91400 1.25775 0.94826 0.95609 1.02221 1.70038 1.36815 1.23802 1.24669 0.85359 0.77937 0.79031 0.78107 1.20178 1.20598 1.18814 1.46417 1.64814 1.14138 1.10087 1.21032 0.77456 0.87019 0.85286 1.90628 1.52721 1.17935 1.85894 1.21643 1.01077 0.97032 0.93236 0.88003 1.21329 1.02596 0.96614 0.92944 1.21945 0.98953 0.97580 0.97794 1.22630 1.01549 0.91758 0.87452 1.48027 1.66533 1.06684 1.11764 1.18968 0.75688 0.81738 0.89217 1.90778 1.53738 1.62358 1.39404 1.19800 1.02906 1.00135 0.92378 1.21721 0.98685 0.99383 0.91375 1.21525 0.98231 0.96393 0.97933 1.21797 0.94512 0.95347 0.99420 1.21419 1.00865 1.00721 0.91641 1.21307 0.96133 0.93918 0.99099 1.21342 0.97030 0.94191 0.86942 0.91361 0.96600 0.94372 0.92441 0.76490 0.91426 0.91877 0.91452 0.87113 0.86234 0.88838 0.83291 0.82222 0.82599 0.83462 0.86590 0.90017 0.90489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.91 9.26 71.98 0.67 -6.24 16 2 C 0.27 14.53 2.56 44.25 0.11 14.65 16 3 H 0.00 0.05 7.58 -2.39 -0.02 0.04 16 4 C -0.55 -30.37 8.73 25.60 0.22 -30.15 16 5 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 6 C 0.02 0.88 5.30 84.65 0.45 1.33 16 7 N -0.92 -53.51 11.32 21.45 0.24 -53.26 16 8 Si 0.97 43.49 29.54 68.60 2.03 45.51 16 9 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 12 N -0.71 -31.04 4.98 -446.09 -2.22 -33.26 16 13 C 0.51 20.60 7.12 87.66 0.62 21.22 16 14 O -0.59 -28.76 15.64 -3.04 -0.05 -28.81 16 15 C -0.11 -3.14 2.67 -11.46 -0.03 -3.17 16 16 H 0.10 2.86 8.14 -2.38 -0.02 2.84 16 17 C -0.10 -2.32 4.46 30.62 0.14 -2.18 16 18 C -0.12 -1.88 6.08 30.67 0.19 -1.69 16 19 C 0.09 1.22 4.78 86.36 0.41 1.63 16 20 N -0.60 -13.45 2.97 -822.30 -2.44 -15.89 16 21 C 0.55 14.60 7.38 86.79 0.64 15.24 16 22 O -0.58 -20.65 16.25 -3.91 -0.06 -20.71 16 23 C -0.15 -2.93 5.29 -20.09 -0.11 -3.03 16 24 C -0.09 -1.17 7.36 22.53 0.17 -1.00 16 25 C -0.12 -1.00 10.03 22.23 0.22 -0.78 16 26 C -0.09 -0.76 10.04 22.33 0.22 -0.54 16 27 C -0.13 -1.54 10.03 22.23 0.22 -1.32 16 28 C -0.09 -1.58 9.61 22.53 0.22 -1.37 16 29 C 0.13 3.53 5.58 86.36 0.48 4.01 16 30 H 0.07 3.87 6.07 -2.39 -0.01 3.86 16 31 H 0.01 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 34 H 0.40 15.81 8.09 -92.71 -0.75 15.06 16 35 H 0.07 1.70 8.13 -2.39 -0.02 1.68 16 36 H 0.06 1.68 8.07 -2.38 -0.02 1.66 16 37 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 38 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.12 1.23 4.46 -2.38 -0.01 1.22 16 40 H 0.09 1.00 8.05 -2.39 -0.02 0.98 16 41 H 0.15 1.35 6.06 -2.91 -0.02 1.33 16 42 H 0.16 0.33 8.06 -2.91 -0.02 0.31 16 43 H 0.16 0.35 8.06 -2.91 -0.02 0.33 16 44 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 45 H 0.12 2.41 8.01 -2.91 -0.02 2.39 16 46 H 0.08 2.58 6.60 -2.39 -0.02 2.56 16 47 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -76.48 378.50 2.58 -73.90 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.23 Total: 25.91 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 4.85 Total: 6.60 kcal Atomic # 7 Polarization: -97.99 SS G_CDS: -4.42 Total: -102.41 kcal Atomic # 8 Polarization: -49.41 SS G_CDS: -0.11 Total: -49.52 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -76.48 2.58 -73.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264590604.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.474 kcal (2) G-P(sol) polarization free energy of solvation -76.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds