Wall clock time and date at job start Tue Mar 31 2020 15:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46739 * 2 1 4 4 C 1.50699 * 109.46916 * 240.00622 * 2 1 3 5 5 H 1.08003 * 119.99718 * 239.99766 * 4 2 1 6 6 C 1.37877 * 120.00500 * 60.00001 * 4 2 1 7 7 N 1.31509 * 120.00332 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99546 * 0.27082 * 6 4 2 9 9 H 1.48503 * 109.47201 * 269.72304 * 8 6 4 10 10 H 1.48497 * 109.47132 * 29.73067 * 8 6 4 11 11 H 1.48508 * 109.47025 * 149.72645 * 8 6 4 12 12 N 1.46494 * 109.47157 * 120.00286 * 2 1 3 13 13 C 1.34780 * 120.00376 * 275.00039 * 12 2 1 14 14 O 1.21277 * 119.99464 * 0.02562 * 13 12 2 15 15 C 1.50690 * 120.00113 * 180.02562 * 13 12 2 16 16 H 1.08998 * 109.49779 * 299.99454 * 15 13 12 17 17 C 1.53044 * 109.49565 * 179.97438 * 15 13 12 18 18 C 1.53043 * 109.53673 * 178.71645 * 17 15 13 19 19 C 1.53183 * 109.34145 * 61.31261 * 18 17 15 20 20 N 1.46916 * 108.78070 * 305.38149 * 19 18 17 21 21 C 1.34775 * 120.63582 * 233.58895 * 20 19 18 22 22 O 1.21555 * 120.00531 * 174.18590 * 21 20 19 23 23 C 1.47849 * 119.99699 * 354.18528 * 21 20 19 24 24 C 1.39578 * 120.14272 * 318.66494 * 23 21 20 25 25 C 1.37963 * 119.85127 * 179.78923 * 24 23 21 26 26 C 1.38358 * 120.14216 * 0.48541 * 25 24 23 27 27 C 1.38356 * 120.29483 * 359.74452 * 26 25 24 28 28 C 1.37957 * 120.14750 * 0.02562 * 27 26 25 29 29 C 1.46929 * 118.73923 * 53.60557 * 20 19 18 30 30 H 1.08995 * 109.47055 * 59.99851 * 1 2 3 31 31 H 1.09004 * 109.46887 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47058 * 299.99212 * 1 2 3 33 33 H 0.97005 * 120.00428 * 179.97438 * 7 6 4 34 34 H 0.97010 * 119.99881 * 95.00290 * 12 2 1 35 35 H 1.09001 * 109.46011 * 298.70113 * 17 15 13 36 36 H 1.08996 * 109.46123 * 58.66039 * 17 15 13 37 37 H 1.09004 * 109.46873 * 301.35858 * 18 17 15 38 38 H 1.09006 * 109.51752 * 181.30029 * 18 17 15 39 39 H 1.09004 * 109.58348 * 185.58844 * 19 18 17 40 40 H 1.09002 * 109.58484 * 65.17058 * 19 18 17 41 41 H 1.07994 * 120.07353 * 359.97438 * 24 23 21 42 42 H 1.07994 * 119.92507 * 180.22801 * 25 24 23 43 43 H 1.07998 * 119.84894 * 179.71787 * 26 25 24 44 44 H 1.07999 * 119.92710 * 180.02562 * 27 26 25 45 45 H 1.07998 * 120.07448 * 179.97438 * 28 27 26 46 46 H 1.09002 * 109.58828 * 186.60655 * 29 20 19 47 47 H 1.09000 * 109.70319 * 66.25247 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 2.1380 -0.8587 -3.5566 8 14 0.6316 1.2841 -2.6540 9 1 -0.7976 0.8838 -2.7034 10 1 0.8553 2.1787 -1.4901 11 1 0.9884 2.0006 -3.9049 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3572 14 8 1.8582 1.1582 2.4118 15 6 2.6500 -0.7287 3.5873 16 1 1.9780 -1.5511 3.8328 17 6 2.7022 0.2542 4.7592 18 6 3.1824 -0.4738 6.0169 19 6 4.5938 -1.0196 5.7794 20 7 4.5818 -1.8513 4.5684 21 6 5.0450 -3.1166 4.5996 22 8 4.9333 -3.8291 3.6211 23 6 5.6891 -3.6380 5.8240 24 6 6.5709 -2.8345 6.5486 25 6 7.1652 -3.3256 7.6927 26 6 6.8965 -4.6150 8.1166 27 6 6.0271 -5.4183 7.4003 28 6 5.4225 -4.9378 6.2571 29 6 4.0555 -1.2774 3.3224 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.9034 -0.5275 -4.4377 34 1 2.2491 -1.6319 1.1524 35 1 3.3924 1.0642 4.5233 36 1 1.7075 0.6643 4.9338 37 1 2.5058 -1.2990 6.2396 38 1 3.1974 0.2211 6.8566 39 1 4.9009 -1.6227 6.6339 40 1 5.2886 -0.1904 5.6463 41 1 6.7851 -1.8296 6.2161 42 1 7.8448 -2.7037 8.2563 43 1 7.3679 -4.9962 9.0104 44 1 5.8214 -6.4237 7.7367 45 1 4.7444 -5.5660 5.6986 46 1 4.0074 -2.0507 2.5556 47 1 4.7058 -0.4697 2.9864 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264591744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:18 Heat of formation + Delta-G solvation = -42.212382 kcal Electronic energy + Delta-G solvation = -28240.622182 eV Core-core repulsion = 24388.219945 eV Total energy + Delta-G solvation = -3852.402238 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.90107 -39.52647 -38.50050 -37.13575 -35.03412 -33.29101 -32.48657 -31.83702 -31.35010 -31.02716 -29.47767 -26.01112 -25.21730 -24.54075 -23.37832 -22.79885 -21.91263 -20.56475 -19.68175 -19.40757 -17.88657 -17.10646 -16.87297 -16.34018 -15.90150 -15.66252 -15.50721 -15.15257 -14.90725 -14.65870 -14.20196 -14.09726 -13.83684 -13.61950 -13.46293 -13.33662 -13.20849 -12.92770 -12.79610 -12.47023 -12.19001 -12.07912 -11.85508 -11.55686 -11.48300 -11.21894 -11.11819 -11.01453 -10.81272 -10.69368 -10.17188 -10.10047 -9.70317 -9.35241 -9.25192 -9.21073 -9.16008 -8.80124 -8.73533 -8.15353 -6.18137 -4.20736 0.61186 0.97335 2.51013 2.69659 3.21251 3.25069 3.36412 3.40735 3.43016 3.90265 4.15695 4.33365 4.47028 4.54538 4.62735 4.66977 4.72463 4.74336 4.91956 5.00730 5.08689 5.11137 5.16311 5.22384 5.33883 5.41398 5.52636 5.56483 5.59742 5.68880 5.72626 5.85373 5.95040 6.00938 6.06671 6.09658 6.25206 6.27914 6.32580 6.39149 6.49781 6.57358 6.86008 7.16480 7.20456 7.29354 7.53366 7.95175 8.15940 8.54172 8.78670 8.92243 9.42280 10.94066 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.021231 B = 0.002665 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.512190 B =10502.573496 C =11367.200240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.236 3.764 3 H 0.048 0.952 4 C -0.535 4.535 5 H 0.081 0.919 6 C 0.078 3.922 7 N -0.892 5.892 8 Si 0.885 3.115 9 H -0.277 1.277 10 H -0.262 1.262 11 H -0.294 1.294 12 N -0.699 5.699 13 C 0.510 3.490 14 O -0.553 6.553 15 C -0.122 4.122 16 H 0.097 0.903 17 C -0.099 4.099 18 C -0.135 4.135 19 C 0.096 3.904 20 N -0.604 5.604 21 C 0.558 3.442 22 O -0.527 6.527 23 C -0.125 4.125 24 C -0.090 4.090 25 C -0.127 4.127 26 C -0.100 4.100 27 C -0.125 4.125 28 C -0.067 4.067 29 C 0.121 3.879 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.035 0.965 33 H 0.267 0.733 34 H 0.396 0.604 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.094 0.906 40 H 0.073 0.927 41 H 0.131 0.869 42 H 0.128 0.872 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.103 0.897 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.894 -4.779 27.032 28.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.132 3.868 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.099 0.901 6 C -0.126 4.126 7 N -0.529 5.529 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.187 1.187 11 H -0.222 1.222 12 N -0.347 5.347 13 C 0.294 3.706 14 O -0.432 6.432 15 C -0.144 4.144 16 H 0.115 0.885 17 C -0.137 4.137 18 C -0.173 4.173 19 C -0.027 4.027 20 N -0.337 5.337 21 C 0.346 3.654 22 O -0.404 6.404 23 C -0.128 4.128 24 C -0.109 4.109 25 C -0.145 4.145 26 C -0.119 4.119 27 C -0.143 4.143 28 C -0.086 4.086 29 C -0.001 4.001 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.230 0.770 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.149 0.851 42 H 0.146 0.854 43 H 0.144 0.856 44 H 0.147 0.853 45 H 0.150 0.850 46 H 0.121 0.879 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.633 -4.317 26.280 27.705 hybrid contribution -0.541 0.297 -0.312 0.692 sum 7.091 -4.020 25.969 27.218 Atomic orbital electron populations 1.22447 0.99335 1.00860 0.99255 1.19109 0.90126 0.94636 0.82879 0.93387 1.21055 1.33232 1.14451 0.88517 0.90112 1.24836 0.95506 0.96692 0.95535 1.69873 1.44832 1.40150 0.98026 0.86880 0.80497 0.83689 0.77416 1.20343 1.18685 1.22170 1.46273 1.64663 1.13961 1.09792 1.20228 0.78603 0.87315 0.84473 1.90648 1.51569 1.15968 1.85037 1.21709 0.97773 0.99741 0.95200 0.88538 1.21321 1.03075 0.97113 0.92179 1.21963 0.96148 1.00619 0.98554 1.22135 0.98074 0.95029 0.87421 1.47979 1.61895 1.12663 1.11168 1.18417 0.78205 0.81117 0.87651 1.90834 1.56741 1.56650 1.36126 1.19922 1.00816 0.95707 0.96334 1.21428 0.95586 0.99460 0.94407 1.21126 1.00344 0.96169 0.96879 1.21362 0.96986 0.94060 0.99458 1.21158 0.97528 1.00274 0.95375 1.21246 0.98205 0.93654 0.95479 1.21594 0.92881 0.99342 0.86318 0.93462 0.92812 0.94601 0.92307 0.76995 0.90859 0.90665 0.91402 0.90221 0.88824 0.90907 0.85084 0.85360 0.85636 0.85319 0.85022 0.87921 0.90410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 8.97 37.16 0.33 -3.31 16 2 C 0.24 5.69 2.15 -69.08 -0.15 5.54 16 3 H 0.05 1.27 6.62 -51.93 -0.34 0.93 16 4 C -0.53 -14.69 9.31 -34.44 -0.32 -15.01 16 5 H 0.08 2.35 7.98 -52.48 -0.42 1.93 16 6 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 7 N -0.89 -26.83 13.96 55.43 0.77 -26.05 16 8 Si 0.89 22.02 24.38 -169.99 -4.14 17.88 16 9 H -0.28 -6.66 6.87 56.52 0.39 -6.27 16 10 H -0.26 -6.46 6.52 56.52 0.37 -6.09 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 N -0.70 -14.04 4.97 -54.94 -0.27 -14.32 16 13 C 0.51 9.41 7.12 -10.99 -0.08 9.33 16 14 O -0.55 -12.07 15.64 5.56 0.09 -11.99 16 15 C -0.12 -1.66 2.67 -91.65 -0.25 -1.91 16 16 H 0.10 1.24 8.14 -51.93 -0.42 0.82 16 17 C -0.10 -1.15 4.46 -26.69 -0.12 -1.27 16 18 C -0.13 -1.12 6.08 -26.61 -0.16 -1.29 16 19 C 0.10 0.78 4.92 -3.72 -0.02 0.77 16 20 N -0.60 -6.92 2.97 -173.89 -0.52 -7.43 16 21 C 0.56 7.30 7.31 -12.33 -0.09 7.21 16 22 O -0.53 -9.01 16.36 5.32 0.09 -8.92 16 23 C -0.12 -1.28 5.09 -104.96 -0.53 -1.82 16 24 C -0.09 -0.71 7.39 -39.18 -0.29 -1.00 16 25 C -0.13 -0.80 10.03 -39.64 -0.40 -1.20 16 26 C -0.10 -0.62 10.04 -39.49 -0.40 -1.01 16 27 C -0.13 -0.89 10.03 -39.64 -0.40 -1.29 16 28 C -0.07 -0.63 9.65 -39.18 -0.38 -1.01 16 29 C 0.12 1.62 5.58 -3.71 -0.02 1.60 16 30 H 0.05 1.10 3.29 -51.93 -0.17 0.93 16 31 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 34 H 0.40 7.30 8.09 -40.82 -0.33 6.97 16 35 H 0.07 0.90 8.13 -51.93 -0.42 0.48 16 36 H 0.07 0.93 8.07 -51.93 -0.42 0.52 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.64 4.80 -51.93 -0.25 0.39 16 40 H 0.07 0.52 8.13 -51.93 -0.42 0.09 16 41 H 0.13 0.86 6.70 -52.49 -0.35 0.51 16 42 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 43 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 44 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 45 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 46 H 0.10 1.55 6.60 -51.93 -0.34 1.21 16 47 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 372.85 15.07 5.62 5.62 Total: -1.00 -34.28 372.85 -8.61 -42.89 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.88 Total: 5.86 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -3.36 Total: -3.53 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.02 Total: -47.80 kcal Atomic # 8 Polarization: -21.09 SS G_CDS: 0.17 Total: -20.91 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.14 Total: 17.88 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.28 -8.61 -42.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264591744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.677 kcal (2) G-P(sol) polarization free energy of solvation -34.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds