Wall clock time and date at job start Tue Mar 31 2020 15:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.46739 * 2 1 4 4 C 1.50699 * 109.46916 * 240.00622 * 2 1 3 5 5 H 1.08003 * 119.99718 * 239.99766 * 4 2 1 6 6 C 1.37877 * 120.00500 * 60.00001 * 4 2 1 7 7 N 1.31509 * 120.00332 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 119.99546 * 0.27082 * 6 4 2 9 9 H 1.48503 * 109.47201 * 269.72304 * 8 6 4 10 10 H 1.48497 * 109.47132 * 29.73067 * 8 6 4 11 11 H 1.48508 * 109.47025 * 149.72645 * 8 6 4 12 12 N 1.46494 * 109.47157 * 120.00286 * 2 1 3 13 13 C 1.34780 * 120.00376 * 275.00039 * 12 2 1 14 14 O 1.21277 * 119.99464 * 0.02562 * 13 12 2 15 15 C 1.50690 * 120.00113 * 180.02562 * 13 12 2 16 16 H 1.08998 * 109.49779 * 299.99454 * 15 13 12 17 17 C 1.53044 * 109.49565 * 179.97438 * 15 13 12 18 18 C 1.53043 * 109.53673 * 178.71645 * 17 15 13 19 19 C 1.53183 * 109.34145 * 61.31261 * 18 17 15 20 20 N 1.46916 * 108.78070 * 305.38149 * 19 18 17 21 21 C 1.34775 * 120.63582 * 233.58895 * 20 19 18 22 22 O 1.21555 * 120.00531 * 174.18590 * 21 20 19 23 23 C 1.47849 * 119.99699 * 354.18528 * 21 20 19 24 24 C 1.39578 * 120.14272 * 318.66494 * 23 21 20 25 25 C 1.37963 * 119.85127 * 179.78923 * 24 23 21 26 26 C 1.38358 * 120.14216 * 0.48541 * 25 24 23 27 27 C 1.38356 * 120.29483 * 359.74452 * 26 25 24 28 28 C 1.37957 * 120.14750 * 0.02562 * 27 26 25 29 29 C 1.46929 * 118.73923 * 53.60557 * 20 19 18 30 30 H 1.08995 * 109.47055 * 59.99851 * 1 2 3 31 31 H 1.09004 * 109.46887 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47058 * 299.99212 * 1 2 3 33 33 H 0.97005 * 120.00428 * 179.97438 * 7 6 4 34 34 H 0.97010 * 119.99881 * 95.00290 * 12 2 1 35 35 H 1.09001 * 109.46011 * 298.70113 * 17 15 13 36 36 H 1.08996 * 109.46123 * 58.66039 * 17 15 13 37 37 H 1.09004 * 109.46873 * 301.35858 * 18 17 15 38 38 H 1.09006 * 109.51752 * 181.30029 * 18 17 15 39 39 H 1.09004 * 109.58348 * 185.58844 * 19 18 17 40 40 H 1.09002 * 109.58484 * 65.17058 * 19 18 17 41 41 H 1.07994 * 120.07353 * 359.97438 * 24 23 21 42 42 H 1.07994 * 119.92507 * 180.22801 * 25 24 23 43 43 H 1.07998 * 119.84894 * 179.71787 * 26 25 24 44 44 H 1.07999 * 119.92710 * 180.02562 * 27 26 25 45 45 H 1.07998 * 120.07448 * 179.97438 * 28 27 26 46 46 H 1.09002 * 109.58828 * 186.60655 * 29 20 19 47 47 H 1.09000 * 109.70319 * 66.25247 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 2.1380 -0.8587 -3.5566 8 14 0.6316 1.2841 -2.6540 9 1 -0.7976 0.8838 -2.7034 10 1 0.8553 2.1787 -1.4901 11 1 0.9884 2.0006 -3.9049 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3572 14 8 1.8582 1.1582 2.4118 15 6 2.6500 -0.7287 3.5873 16 1 1.9780 -1.5511 3.8328 17 6 2.7022 0.2542 4.7592 18 6 3.1824 -0.4738 6.0169 19 6 4.5938 -1.0196 5.7794 20 7 4.5818 -1.8513 4.5684 21 6 5.0450 -3.1166 4.5996 22 8 4.9333 -3.8291 3.6211 23 6 5.6891 -3.6380 5.8240 24 6 6.5709 -2.8345 6.5486 25 6 7.1652 -3.3256 7.6927 26 6 6.8965 -4.6150 8.1166 27 6 6.0271 -5.4183 7.4003 28 6 5.4225 -4.9378 6.2571 29 6 4.0555 -1.2774 3.3224 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.9034 -0.5275 -4.4377 34 1 2.2491 -1.6319 1.1524 35 1 3.3924 1.0642 4.5233 36 1 1.7075 0.6643 4.9338 37 1 2.5058 -1.2990 6.2396 38 1 3.1974 0.2211 6.8566 39 1 4.9009 -1.6227 6.6339 40 1 5.2886 -0.1904 5.6463 41 1 6.7851 -1.8296 6.2161 42 1 7.8448 -2.7037 8.2563 43 1 7.3679 -4.9962 9.0104 44 1 5.8214 -6.4237 7.7367 45 1 4.7444 -5.5660 5.6986 46 1 4.0074 -2.0507 2.5556 47 1 4.7058 -0.4697 2.9864 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264591744.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:50:16 Heat of formation + Delta-G solvation = -65.393286 kcal Electronic energy + Delta-G solvation = -28241.627382 eV Core-core repulsion = 24388.219945 eV Total energy + Delta-G solvation = -3853.407437 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.86034 -40.81913 -39.34013 -38.24003 -36.85916 -34.51983 -34.24382 -32.87865 -32.03424 -31.89793 -30.99624 -27.26849 -26.91364 -25.67726 -24.11099 -23.47290 -23.17640 -21.89993 -21.13747 -20.39899 -19.22347 -18.47193 -17.75254 -17.55691 -17.36436 -17.11057 -16.60400 -16.13730 -16.10162 -15.60228 -15.31893 -15.20779 -14.89690 -14.82211 -14.67194 -14.48268 -14.35217 -14.14713 -14.11162 -13.71005 -13.64353 -13.41547 -13.17981 -12.81269 -12.69168 -12.44279 -12.16664 -12.09170 -11.99035 -11.88103 -11.68071 -11.64120 -11.31343 -11.09610 -10.90276 -10.70619 -9.98607 -9.92640 -9.86294 -9.71722 -8.40103 -6.47038 -0.02478 0.42875 1.25627 1.33362 1.43394 1.50027 1.69577 1.88500 2.24050 2.40922 2.82836 2.95475 3.36048 3.64033 3.70164 3.77205 3.96477 4.00183 4.03989 4.12113 4.19846 4.26192 4.41169 4.45210 4.51006 4.51867 4.54327 4.57346 4.66340 4.68763 4.75169 4.82901 4.90739 4.95408 5.03416 5.08974 5.15581 5.27861 5.34387 5.36988 5.39666 5.42623 5.46340 5.54880 5.59933 5.97973 6.09765 6.26233 6.54601 6.79627 6.98496 7.15175 7.35543 8.75554 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.021231 B = 0.002665 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.512190 B =10502.573496 C =11367.200240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.241 3.759 3 H 0.026 0.974 4 C -0.536 4.536 5 H 0.051 0.949 6 C 0.027 3.973 7 N -0.935 5.935 8 Si 0.943 3.057 9 H -0.259 1.259 10 H -0.260 1.260 11 H -0.291 1.291 12 N -0.702 5.702 13 C 0.511 3.489 14 O -0.584 6.584 15 C -0.107 4.107 16 H 0.107 0.893 17 C -0.096 4.096 18 C -0.125 4.125 19 C 0.092 3.908 20 N -0.598 5.598 21 C 0.553 3.447 22 O -0.582 6.582 23 C -0.147 4.147 24 C -0.091 4.091 25 C -0.122 4.122 26 C -0.094 4.094 27 C -0.127 4.127 28 C -0.087 4.087 29 C 0.125 3.875 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.271 0.729 34 H 0.403 0.597 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.144 0.856 42 H 0.159 0.841 43 H 0.156 0.844 44 H 0.148 0.852 45 H 0.116 0.884 46 H 0.078 0.922 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.340 -3.964 30.916 32.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.137 3.863 3 H 0.044 0.956 4 C -0.574 4.574 5 H 0.069 0.931 6 C -0.173 4.173 7 N -0.574 5.574 8 Si 0.770 3.230 9 H -0.184 1.184 10 H -0.184 1.184 11 H -0.218 1.218 12 N -0.351 5.351 13 C 0.297 3.703 14 O -0.464 6.464 15 C -0.129 4.129 16 H 0.125 0.875 17 C -0.134 4.134 18 C -0.163 4.163 19 C -0.029 4.029 20 N -0.330 5.330 21 C 0.344 3.656 22 O -0.463 6.463 23 C -0.150 4.150 24 C -0.110 4.110 25 C -0.140 4.140 26 C -0.112 4.112 27 C -0.145 4.145 28 C -0.106 4.106 29 C 0.002 3.998 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.238 0.762 35 H 0.086 0.914 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.129 0.871 39 H 0.132 0.868 40 H 0.109 0.891 41 H 0.162 0.838 42 H 0.177 0.823 43 H 0.174 0.826 44 H 0.166 0.834 45 H 0.134 0.866 46 H 0.097 0.903 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.080 -3.496 30.223 31.479 hybrid contribution -0.572 -0.019 -1.442 1.551 sum 7.508 -3.515 28.781 29.951 Atomic orbital electron populations 1.22336 0.97705 1.01601 0.99617 1.18781 0.91298 0.93190 0.83074 0.95601 1.21259 1.32455 1.13535 0.90174 0.93126 1.25619 0.96876 0.99585 0.95207 1.69991 1.46597 1.42075 0.98701 0.85939 0.79634 0.80073 0.77355 1.18443 1.18428 1.21814 1.46183 1.65108 1.14287 1.09503 1.20982 0.77356 0.86961 0.84987 1.90625 1.52752 1.17441 1.85611 1.21645 0.97680 1.00111 0.93490 0.87530 1.21338 1.02845 0.96617 0.92609 1.21940 0.95844 1.00892 0.97586 1.22449 0.98633 0.95359 0.86486 1.48037 1.60893 1.12628 1.11430 1.19004 0.77612 0.81004 0.88027 1.90795 1.59114 1.58134 1.38266 1.19785 1.02603 0.96626 0.95967 1.21590 0.94936 0.99775 0.94649 1.21508 0.99839 0.96553 0.96079 1.21784 0.95743 0.93779 0.99856 1.21413 0.97232 1.01394 0.94445 1.21292 0.99095 0.93519 0.96713 1.21364 0.92870 0.98487 0.87127 0.93917 0.91917 0.93284 0.91995 0.76220 0.91441 0.91271 0.91322 0.87112 0.86800 0.89085 0.83843 0.82314 0.82585 0.83408 0.86584 0.90345 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.89 8.97 71.98 0.65 -6.24 16 2 C 0.24 11.81 2.15 44.25 0.10 11.91 16 3 H 0.03 1.40 6.62 -2.39 -0.02 1.38 16 4 C -0.54 -30.41 9.31 25.60 0.24 -30.17 16 5 H 0.05 3.10 7.98 -2.91 -0.02 3.08 16 6 C 0.03 1.55 5.45 84.66 0.46 2.01 16 7 N -0.93 -57.68 13.96 21.45 0.30 -57.38 16 8 Si 0.94 45.58 24.38 68.60 1.67 47.25 16 9 H -0.26 -11.72 6.87 99.48 0.68 -11.04 16 10 H -0.26 -12.37 6.52 99.48 0.65 -11.72 16 11 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 12 N -0.70 -28.94 4.97 -446.11 -2.22 -31.16 16 13 C 0.51 19.02 7.12 87.65 0.62 19.64 16 14 O -0.58 -25.47 15.64 -3.02 -0.05 -25.52 16 15 C -0.11 -2.90 2.67 -11.46 -0.03 -2.93 16 16 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 17 C -0.10 -2.08 4.46 30.62 0.14 -1.94 16 18 C -0.12 -1.71 6.08 30.67 0.19 -1.52 16 19 C 0.09 1.26 4.92 86.36 0.43 1.68 16 20 N -0.60 -13.46 2.97 -822.33 -2.44 -15.90 16 21 C 0.55 14.86 7.31 86.79 0.63 15.50 16 22 O -0.58 -21.33 16.36 -3.89 -0.06 -21.39 16 23 C -0.15 -2.93 5.09 -20.09 -0.10 -3.03 16 24 C -0.09 -1.19 7.39 22.53 0.17 -1.03 16 25 C -0.12 -1.05 10.03 22.23 0.22 -0.82 16 26 C -0.09 -0.79 10.04 22.33 0.22 -0.56 16 27 C -0.13 -1.54 10.03 22.23 0.22 -1.31 16 28 C -0.09 -1.62 9.65 22.53 0.22 -1.41 16 29 C 0.13 3.43 5.58 86.36 0.48 3.91 16 30 H 0.04 1.93 3.29 -2.39 -0.01 1.92 16 31 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.27 15.60 8.31 -92.70 -0.77 14.83 16 34 H 0.40 15.55 8.09 -92.70 -0.75 14.80 16 35 H 0.07 1.55 8.13 -2.39 -0.02 1.53 16 36 H 0.07 1.61 8.07 -2.39 -0.02 1.59 16 37 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 39 H 0.11 1.18 4.80 -2.38 -0.01 1.17 16 40 H 0.09 0.98 8.13 -2.39 -0.02 0.96 16 41 H 0.14 1.44 6.70 -2.91 -0.02 1.42 16 42 H 0.16 0.42 8.06 -2.91 -0.02 0.39 16 43 H 0.16 0.38 8.06 -2.91 -0.02 0.36 16 44 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 45 H 0.12 2.40 8.06 -2.91 -0.02 2.37 16 46 H 0.08 2.55 6.60 -2.39 -0.02 2.53 16 47 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -77.76 372.85 2.21 -75.55 By element: Atomic # 1 Polarization: 24.69 SS G_CDS: 0.16 Total: 24.85 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: 4.85 Total: 3.69 kcal Atomic # 7 Polarization: -100.07 SS G_CDS: -4.36 Total: -104.44 kcal Atomic # 8 Polarization: -46.80 SS G_CDS: -0.11 Total: -46.91 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 1.67 Total: 47.25 kcal Total: -77.76 2.21 -75.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264591744.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.159 kcal (2) G-P(sol) polarization free energy of solvation -77.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds