Wall clock time and date at job start Tue Mar 31 2020 17:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47030 * 2 1 4 4 C 1.36754 * 119.99966 * 264.21039 * 3 2 1 5 5 H 1.07998 * 119.99879 * 142.46284 * 4 3 2 6 6 C 1.39086 * 120.00004 * 322.45569 * 4 3 2 7 7 N 1.31349 * 119.99827 * 337.86422 * 6 4 3 8 8 Si 1.86800 * 119.99830 * 157.86290 * 6 4 3 9 9 H 1.48497 * 109.47189 * 59.99882 * 8 6 4 10 10 H 1.48500 * 109.46948 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46976 * 300.00130 * 8 6 4 12 12 C 1.34783 * 119.99739 * 84.20873 * 3 2 1 13 13 O 1.21789 * 119.99603 * 179.97438 * 12 3 2 14 14 C 1.41739 * 120.00072 * 0.02562 * 12 3 2 15 15 C 1.35196 * 119.99641 * 179.97438 * 14 12 3 16 16 C 1.46873 * 119.99711 * 179.97438 * 15 14 12 17 17 C 1.40061 * 120.09454 * 180.02562 * 16 15 14 18 18 C 1.37097 * 119.90110 * 179.97438 * 17 16 15 19 19 C 1.39253 * 120.09494 * 0.02562 * 18 17 16 20 20 N 1.39116 * 119.89949 * 179.97438 * 19 18 17 21 21 C 1.47016 * 111.00206 * 179.97438 * 20 19 18 22 22 C 1.53089 * 109.26337 * 182.39136 * 21 20 19 23 23 O 1.43020 * 109.26079 * 303.15459 * 22 21 20 24 24 C 1.43014 * 113.73740 * 58.66244 * 23 22 21 25 25 C 1.47016 * 111.00202 * 303.62856 * 20 19 18 26 26 C 1.39247 * 120.19611 * 0.26515 * 19 18 17 27 27 C 1.37090 * 120.09834 * 359.45356 * 26 19 18 28 28 H 1.09002 * 109.47364 * 299.99784 * 1 2 3 29 29 H 1.08999 * 109.47485 * 59.99886 * 1 2 3 30 30 H 1.08999 * 109.47461 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47364 * 240.00216 * 2 1 3 32 32 H 1.09000 * 109.46779 * 119.99866 * 2 1 3 33 33 H 0.96999 * 119.99389 * 179.97438 * 7 6 4 34 34 H 1.08000 * 120.00048 * 0.02562 * 14 12 3 35 35 H 1.08000 * 120.00310 * 0.02562 * 15 14 12 36 36 H 1.07999 * 120.05459 * 359.95682 * 17 16 15 37 37 H 1.07996 * 119.94961 * 179.97438 * 18 17 16 38 38 H 1.09005 * 109.50190 * 62.45359 * 21 20 19 39 39 H 1.08997 * 109.50798 * 302.33292 * 21 20 19 40 40 H 1.09000 * 109.50952 * 183.22122 * 22 21 20 41 41 H 1.09000 * 109.54322 * 63.10317 * 22 21 20 42 42 H 1.09001 * 109.50369 * 61.26971 * 24 23 22 43 43 H 1.09000 * 109.50865 * 181.39886 * 24 23 22 44 44 H 1.09002 * 109.50593 * 297.54426 * 25 20 19 45 45 H 1.09001 * 109.50387 * 57.67593 * 25 20 19 46 46 H 1.07994 * 119.95116 * 179.72881 * 26 19 18 47 47 H 1.08004 * 120.05467 * 180.27157 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3588 1.9861 -1.1783 5 1 2.1376 3.0319 -1.3321 6 6 2.9902 1.2544 -2.1785 7 7 3.6433 0.1557 -1.8757 8 14 2.9094 1.8342 -3.9524 9 1 3.5154 3.1857 -4.0595 10 1 3.6563 0.8862 -4.8176 11 1 1.4916 1.8914 -4.3903 12 6 2.1318 2.0558 1.1613 13 8 2.5382 3.2039 1.1613 14 6 1.7793 1.4287 2.3826 15 6 1.8938 2.1053 3.5475 16 6 1.5280 1.4557 4.8129 17 6 1.6452 2.1548 6.0209 18 6 1.3022 1.5448 7.1997 19 6 0.8382 0.2318 7.1973 20 7 0.4918 -0.3835 8.3960 21 6 0.0291 -1.7600 8.1672 22 6 -0.3972 -2.3779 9.5014 23 8 0.6981 -2.3204 10.4193 24 6 1.1737 -0.9944 10.6657 25 6 1.6158 -0.3621 9.3434 26 6 0.7258 -0.4691 5.9994 27 6 1.0612 0.1351 4.8153 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 4.0833 -0.3547 -2.5734 34 1 1.4201 0.4102 2.3826 35 1 2.2534 3.1236 3.5475 36 1 2.0056 3.1729 6.0238 37 1 1.3926 2.0830 8.1316 38 1 0.8383 -2.3489 7.7353 39 1 -0.8195 -1.7498 7.4831 40 1 -0.6870 -3.4170 9.3453 41 1 -1.2418 -1.8215 9.9076 42 1 0.3749 -0.3971 11.1053 43 1 2.0200 -1.0328 11.3516 44 1 2.4506 -0.9284 8.9305 45 1 1.9251 0.6685 9.5178 46 1 0.3697 -1.4886 6.0025 47 1 0.9695 -0.4078 3.8861 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264703670.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:16 Heat of formation + Delta-G solvation = -11.662306 kcal Electronic energy + Delta-G solvation = -27435.014171 eV Core-core repulsion = 23583.936684 eV Total energy + Delta-G solvation = -3851.077487 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.75482 -39.02574 -38.50229 -36.17306 -35.04292 -32.93722 -32.10355 -32.01808 -30.79231 -29.51747 -29.33824 -26.98188 -25.16775 -24.92731 -23.12822 -22.31199 -22.19712 -21.13654 -20.17832 -18.08954 -17.95356 -16.99657 -16.59582 -16.40849 -15.78787 -15.68559 -15.41013 -15.17885 -14.99933 -14.72956 -14.42482 -13.94363 -13.78364 -13.68057 -13.53244 -12.94329 -12.89607 -12.77582 -12.55925 -12.12507 -11.95673 -11.86498 -11.74942 -11.60030 -11.42154 -11.09588 -11.06310 -10.99501 -10.71618 -10.55201 -10.42642 -10.39944 -10.11781 -9.94145 -9.08550 -9.02158 -8.92342 -8.41902 -7.58388 -7.41292 -6.41366 -3.96494 0.81577 1.43323 2.35563 3.18544 3.22264 3.26165 3.28221 3.45430 3.89174 4.11582 4.39599 4.48231 4.51473 4.59017 4.70269 4.82689 4.84811 4.85416 4.92067 5.04161 5.08401 5.18648 5.23060 5.31646 5.33173 5.36857 5.41682 5.51456 5.60019 5.69440 5.87480 5.99675 6.02694 6.08802 6.18460 6.28773 6.33157 6.46589 6.50431 6.60077 6.66181 6.73217 6.82492 6.96932 7.04210 7.14625 7.18285 7.52074 8.24110 8.49909 9.17491 9.36309 10.03125 10.62426 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.027194 B = 0.002136 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.390847 B =13104.394271 C =13678.001179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.098 3.902 3 N -0.426 5.426 4 C -0.304 4.304 5 H 0.093 0.907 6 C 0.037 3.963 7 N -0.861 5.861 8 Si 0.919 3.081 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.272 1.272 12 C 0.473 3.527 13 O -0.592 6.592 14 C -0.164 4.164 15 C -0.079 4.079 16 C -0.066 4.066 17 C -0.084 4.084 18 C -0.137 4.137 19 C 0.098 3.902 20 N -0.487 5.487 21 C 0.012 3.988 22 C 0.063 3.937 23 O -0.385 6.385 24 C 0.062 3.938 25 C 0.019 3.981 26 C -0.166 4.166 27 C -0.086 4.086 28 H 0.045 0.955 29 H 0.057 0.943 30 H 0.051 0.949 31 H 0.105 0.895 32 H 0.050 0.950 33 H 0.270 0.730 34 H 0.117 0.883 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.123 0.877 38 H 0.057 0.943 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.053 0.947 45 H 0.093 0.907 46 H 0.125 0.875 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.469 -6.885 21.161 23.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.026 4.026 3 N -0.143 5.143 4 C -0.433 4.433 5 H 0.111 0.889 6 C -0.169 4.169 7 N -0.497 5.497 8 Si 0.745 3.255 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.197 1.197 12 C 0.266 3.734 13 O -0.479 6.479 14 C -0.184 4.184 15 C -0.100 4.100 16 C -0.067 4.067 17 C -0.103 4.103 18 C -0.157 4.157 19 C 0.001 3.999 20 N -0.203 5.203 21 C -0.115 4.115 22 C -0.014 4.014 23 O -0.303 6.303 24 C -0.015 4.015 25 C -0.107 4.107 26 C -0.186 4.186 27 C -0.105 4.105 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.123 0.877 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.134 0.866 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.141 0.859 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.072 0.928 45 H 0.112 0.888 46 H 0.143 0.857 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -7.465 -6.447 21.368 23.534 hybrid contribution 0.411 -0.139 -1.445 1.509 sum -7.054 -6.585 19.922 22.136 Atomic orbital electron populations 1.22246 0.97897 1.00443 1.01824 1.21544 0.91861 0.85554 1.03614 1.43507 1.53780 1.11583 1.05390 1.19428 1.36458 0.97117 0.90262 0.88948 1.25456 0.94042 0.96530 1.00828 1.69938 1.28711 1.17070 1.34002 0.86117 0.78614 0.78902 0.81859 1.19560 1.20898 1.19739 1.17080 0.84146 0.88104 0.84100 1.90646 1.51606 1.18570 1.87112 1.22464 1.01393 1.00343 0.94244 1.22139 0.98050 0.99734 0.90107 1.19144 1.00255 0.93933 0.93405 1.21101 0.98243 0.99706 0.91228 1.20508 1.03244 0.93443 0.98478 1.18914 0.98123 0.93998 0.88907 1.59172 1.33422 1.17209 1.10484 1.22988 1.01590 0.87929 0.99022 1.22720 0.89241 1.01623 0.87856 1.88006 1.50797 1.27439 1.64083 1.22716 0.99773 0.83598 0.95378 1.22959 0.91723 1.02775 0.93208 1.21060 1.05400 0.99958 0.92214 1.21195 0.97043 0.94341 0.97906 0.93609 0.92337 0.93020 0.87693 0.93149 0.91962 0.86564 0.85177 0.85404 0.85915 0.92510 0.88724 0.88004 0.92081 0.92058 0.88025 0.92817 0.88840 0.85673 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.97 10.05 37.16 0.37 -2.60 16 2 C 0.10 2.13 5.28 -4.04 -0.02 2.11 16 3 N -0.43 -10.96 2.52 -118.02 -0.30 -11.26 16 4 C -0.30 -8.48 8.88 -15.04 -0.13 -8.62 16 5 H 0.09 2.69 7.77 -52.49 -0.41 2.28 16 6 C 0.04 0.98 4.87 -17.44 -0.09 0.89 16 7 N -0.86 -23.09 11.60 55.50 0.64 -22.45 16 8 Si 0.92 20.38 29.61 -169.99 -5.03 15.35 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 10 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 11 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 12 C 0.47 12.06 7.36 -14.92 -0.11 11.95 16 13 O -0.59 -17.19 15.97 5.11 0.08 -17.11 16 14 C -0.16 -3.29 7.94 -39.33 -0.31 -3.60 16 15 C -0.08 -1.42 9.41 -37.17 -0.35 -1.77 16 16 C -0.07 -0.99 5.87 -105.03 -0.62 -1.61 16 17 C -0.08 -1.08 9.76 -39.31 -0.38 -1.46 16 18 C -0.14 -1.56 9.15 -39.62 -0.36 -1.92 16 19 C 0.10 1.12 5.64 -83.80 -0.47 0.65 16 20 N -0.49 -4.70 4.76 -170.77 -0.81 -5.51 16 21 C 0.01 0.10 4.32 -3.71 -0.02 0.08 16 22 C 0.06 0.45 7.01 37.20 0.26 0.71 16 23 O -0.38 -3.47 10.83 -35.23 -0.38 -3.85 16 24 C 0.06 0.44 7.01 37.21 0.26 0.70 16 25 C 0.02 0.16 5.40 -3.71 -0.02 0.14 16 26 C -0.17 -1.96 8.76 -39.62 -0.35 -2.30 16 27 C -0.09 -1.17 9.38 -39.31 -0.37 -1.54 16 28 H 0.04 0.78 7.48 -51.93 -0.39 0.39 16 29 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.11 2.48 5.63 -51.93 -0.29 2.19 16 32 H 0.05 1.00 6.42 -51.93 -0.33 0.66 16 33 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 34 H 0.12 2.05 3.97 -52.49 -0.21 1.84 16 35 H 0.13 2.46 7.45 -52.49 -0.39 2.07 16 36 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 37 H 0.12 1.15 7.18 -52.49 -0.38 0.77 16 38 H 0.06 0.49 7.51 -51.93 -0.39 0.10 16 39 H 0.09 0.71 7.22 -51.93 -0.38 0.34 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.09 0.67 6.83 -51.93 -0.35 0.31 16 46 H 0.13 1.23 5.78 -52.49 -0.30 0.92 16 47 H 0.13 1.65 6.16 -52.48 -0.32 1.33 16 LS Contribution 375.47 15.07 5.66 5.66 Total: -1.00 -32.74 375.47 -9.51 -42.24 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -6.66 Total: 5.11 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -2.70 Total: -8.18 kcal Atomic # 7 Polarization: -38.76 SS G_CDS: -0.47 Total: -39.23 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.30 Total: -20.96 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.74 -9.51 -42.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264703670.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.581 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds