Wall clock time and date at job start Tue Mar 31 2020 17:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47030 * 2 1 4 4 C 1.36754 * 119.99966 * 264.21039 * 3 2 1 5 5 H 1.07998 * 119.99879 * 142.46284 * 4 3 2 6 6 C 1.39086 * 120.00004 * 322.45569 * 4 3 2 7 7 N 1.31349 * 119.99827 * 337.86422 * 6 4 3 8 8 Si 1.86800 * 119.99830 * 157.86290 * 6 4 3 9 9 H 1.48497 * 109.47189 * 59.99882 * 8 6 4 10 10 H 1.48500 * 109.46948 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.46976 * 300.00130 * 8 6 4 12 12 C 1.34783 * 119.99739 * 84.20873 * 3 2 1 13 13 O 1.21789 * 119.99603 * 179.97438 * 12 3 2 14 14 C 1.41739 * 120.00072 * 0.02562 * 12 3 2 15 15 C 1.35196 * 119.99641 * 179.97438 * 14 12 3 16 16 C 1.46873 * 119.99711 * 179.97438 * 15 14 12 17 17 C 1.40061 * 120.09454 * 180.02562 * 16 15 14 18 18 C 1.37097 * 119.90110 * 179.97438 * 17 16 15 19 19 C 1.39253 * 120.09494 * 0.02562 * 18 17 16 20 20 N 1.39116 * 119.89949 * 179.97438 * 19 18 17 21 21 C 1.47016 * 111.00206 * 179.97438 * 20 19 18 22 22 C 1.53089 * 109.26337 * 182.39136 * 21 20 19 23 23 O 1.43020 * 109.26079 * 303.15459 * 22 21 20 24 24 C 1.43014 * 113.73740 * 58.66244 * 23 22 21 25 25 C 1.47016 * 111.00202 * 303.62856 * 20 19 18 26 26 C 1.39247 * 120.19611 * 0.26515 * 19 18 17 27 27 C 1.37090 * 120.09834 * 359.45356 * 26 19 18 28 28 H 1.09002 * 109.47364 * 299.99784 * 1 2 3 29 29 H 1.08999 * 109.47485 * 59.99886 * 1 2 3 30 30 H 1.08999 * 109.47461 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47364 * 240.00216 * 2 1 3 32 32 H 1.09000 * 109.46779 * 119.99866 * 2 1 3 33 33 H 0.96999 * 119.99389 * 179.97438 * 7 6 4 34 34 H 1.08000 * 120.00048 * 0.02562 * 14 12 3 35 35 H 1.08000 * 120.00310 * 0.02562 * 15 14 12 36 36 H 1.07999 * 120.05459 * 359.95682 * 17 16 15 37 37 H 1.07996 * 119.94961 * 179.97438 * 18 17 16 38 38 H 1.09005 * 109.50190 * 62.45359 * 21 20 19 39 39 H 1.08997 * 109.50798 * 302.33292 * 21 20 19 40 40 H 1.09000 * 109.50952 * 183.22122 * 22 21 20 41 41 H 1.09000 * 109.54322 * 63.10317 * 22 21 20 42 42 H 1.09001 * 109.50369 * 61.26971 * 24 23 22 43 43 H 1.09000 * 109.50865 * 181.39886 * 24 23 22 44 44 H 1.09002 * 109.50593 * 297.54426 * 25 20 19 45 45 H 1.09001 * 109.50387 * 57.67593 * 25 20 19 46 46 H 1.07994 * 119.95116 * 179.72881 * 26 19 18 47 47 H 1.08004 * 120.05467 * 180.27157 * 27 26 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3588 1.9861 -1.1783 5 1 2.1376 3.0319 -1.3321 6 6 2.9902 1.2544 -2.1785 7 7 3.6433 0.1557 -1.8757 8 14 2.9094 1.8342 -3.9524 9 1 3.5154 3.1857 -4.0595 10 1 3.6563 0.8862 -4.8176 11 1 1.4916 1.8914 -4.3903 12 6 2.1318 2.0558 1.1613 13 8 2.5382 3.2039 1.1613 14 6 1.7793 1.4287 2.3826 15 6 1.8938 2.1053 3.5475 16 6 1.5280 1.4557 4.8129 17 6 1.6452 2.1548 6.0209 18 6 1.3022 1.5448 7.1997 19 6 0.8382 0.2318 7.1973 20 7 0.4918 -0.3835 8.3960 21 6 0.0291 -1.7600 8.1672 22 6 -0.3972 -2.3779 9.5014 23 8 0.6981 -2.3204 10.4193 24 6 1.1737 -0.9944 10.6657 25 6 1.6158 -0.3621 9.3434 26 6 0.7258 -0.4691 5.9994 27 6 1.0612 0.1351 4.8153 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8932 -0.5138 0.8900 33 1 4.0833 -0.3547 -2.5734 34 1 1.4201 0.4102 2.3826 35 1 2.2534 3.1236 3.5475 36 1 2.0056 3.1729 6.0238 37 1 1.3926 2.0830 8.1316 38 1 0.8383 -2.3489 7.7353 39 1 -0.8195 -1.7498 7.4831 40 1 -0.6870 -3.4170 9.3453 41 1 -1.2418 -1.8215 9.9076 42 1 0.3749 -0.3971 11.1053 43 1 2.0200 -1.0328 11.3516 44 1 2.4506 -0.9284 8.9305 45 1 1.9251 0.6685 9.5178 46 1 0.3697 -1.4886 6.0025 47 1 0.9695 -0.4078 3.8861 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264703670.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:15 Heat of formation + Delta-G solvation = -32.048724 kcal Electronic energy + Delta-G solvation = -27435.898192 eV Core-core repulsion = 23583.936684 eV Total energy + Delta-G solvation = -3851.961508 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.55209 -40.66500 -39.56038 -37.20193 -36.80949 -34.42743 -33.78962 -32.81919 -31.62713 -31.21801 -30.44537 -28.09882 -26.81062 -25.61697 -24.52206 -23.78286 -23.10640 -22.24083 -21.16123 -19.64683 -18.99613 -18.68478 -18.10254 -17.24845 -16.99784 -16.63218 -16.38337 -16.26567 -16.08297 -15.78464 -15.65690 -15.54633 -15.01485 -14.86307 -14.59912 -14.52764 -14.35953 -13.83826 -13.63159 -13.53690 -13.25790 -13.14367 -12.85532 -12.72929 -12.70044 -12.51908 -12.36816 -12.30211 -12.12109 -11.88875 -11.80212 -11.61283 -11.43776 -10.92718 -10.72036 -10.43902 -10.11051 -9.98722 -9.48084 -8.59498 -8.39262 -6.06417 -0.39911 0.47336 1.03014 1.39836 1.42735 1.51041 2.27674 2.45279 2.60342 2.89861 2.94208 3.13516 3.15551 3.69866 3.80702 3.85874 3.92979 3.96805 4.05175 4.15006 4.23276 4.26091 4.32147 4.38078 4.45421 4.51384 4.56150 4.59480 4.64821 4.69726 4.76440 4.80050 4.89782 4.95680 4.99927 5.04545 5.10452 5.23468 5.25129 5.28449 5.41459 5.50944 5.57208 5.66799 5.76331 5.88149 6.13382 6.19531 6.21978 6.54711 7.16404 7.43002 8.07502 8.62920 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.027194 B = 0.002136 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.390847 B =13104.394271 C =13678.001179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.098 3.902 3 N -0.441 5.441 4 C -0.345 4.345 5 H 0.063 0.937 6 C 0.004 3.996 7 N -0.883 5.883 8 Si 0.984 3.016 9 H -0.277 1.277 10 H -0.269 1.269 11 H -0.262 1.262 12 C 0.464 3.536 13 O -0.646 6.646 14 C -0.202 4.202 15 C -0.035 4.035 16 C -0.104 4.104 17 C -0.077 4.077 18 C -0.141 4.141 19 C 0.113 3.887 20 N -0.491 5.491 21 C 0.009 3.991 22 C 0.063 3.937 23 O -0.404 6.404 24 C 0.062 3.938 25 C 0.018 3.982 26 C -0.173 4.173 27 C -0.082 4.082 28 H 0.052 0.948 29 H 0.042 0.958 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.066 0.934 33 H 0.276 0.724 34 H 0.142 0.858 35 H 0.114 0.886 36 H 0.139 0.861 37 H 0.147 0.853 38 H 0.054 0.946 39 H 0.103 0.897 40 H 0.119 0.881 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.119 0.881 44 H 0.045 0.955 45 H 0.106 0.894 46 H 0.147 0.853 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.675 -8.601 23.539 26.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.025 4.025 3 N -0.158 5.158 4 C -0.473 4.473 5 H 0.081 0.919 6 C -0.199 4.199 7 N -0.520 5.520 8 Si 0.807 3.193 9 H -0.202 1.202 10 H -0.193 1.193 11 H -0.186 1.186 12 C 0.259 3.741 13 O -0.538 6.538 14 C -0.223 4.223 15 C -0.057 4.057 16 C -0.105 4.105 17 C -0.096 4.096 18 C -0.161 4.161 19 C 0.014 3.986 20 N -0.206 5.206 21 C -0.118 4.118 22 C -0.014 4.014 23 O -0.323 6.323 24 C -0.014 4.014 25 C -0.107 4.107 26 C -0.194 4.194 27 C -0.100 4.100 28 H 0.071 0.929 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.159 0.841 35 H 0.132 0.868 36 H 0.157 0.843 37 H 0.165 0.835 38 H 0.072 0.928 39 H 0.121 0.879 40 H 0.137 0.863 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.137 0.863 44 H 0.063 0.937 45 H 0.124 0.876 46 H 0.164 0.836 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.691 -8.214 23.770 26.608 hybrid contribution 0.758 0.377 -1.789 1.980 sum -7.933 -7.837 21.981 24.647 Atomic orbital electron populations 1.22125 0.94947 1.02714 1.01388 1.21647 0.94256 0.83348 1.03218 1.43733 1.54189 1.12947 1.04902 1.19345 1.39034 0.96597 0.92338 0.91950 1.26213 0.92926 0.96529 1.04273 1.69998 1.28839 1.17814 1.35327 0.85155 0.79126 0.78144 0.76891 1.20236 1.19339 1.18619 1.17885 0.82970 0.87552 0.85716 1.90581 1.54118 1.20904 1.88147 1.22154 1.06052 1.01762 0.92302 1.22286 0.93593 0.98607 0.91178 1.19026 1.03886 0.95143 0.92469 1.21290 0.97115 1.00172 0.90976 1.20747 1.02859 0.93636 0.98855 1.19191 0.95729 0.94033 0.89615 1.59167 1.33664 1.18066 1.09708 1.23090 1.01748 0.87005 0.99958 1.22832 0.88867 1.02746 0.86963 1.87990 1.51358 1.28478 1.64442 1.22841 1.00658 0.82935 0.95012 1.23042 0.90838 1.03585 0.93218 1.21283 1.05429 1.00982 0.91663 1.21308 0.96149 0.93704 0.98865 0.92869 0.93924 0.89251 0.89828 0.91579 0.91390 0.84055 0.86803 0.84279 0.83502 0.92810 0.87888 0.86284 0.91649 0.91427 0.86292 0.93681 0.87612 0.83554 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.41 10.05 71.98 0.72 -4.69 16 2 C 0.10 4.33 5.28 86.38 0.46 4.78 16 3 N -0.44 -23.79 2.52 -645.48 -1.63 -25.41 16 4 C -0.34 -20.27 8.88 84.13 0.75 -19.52 16 5 H 0.06 3.92 7.77 -2.91 -0.02 3.90 16 6 C 0.00 0.23 4.87 84.97 0.41 0.64 16 7 N -0.88 -48.41 11.60 21.69 0.25 -48.16 16 8 Si 0.98 42.75 29.61 68.60 2.03 44.79 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 11 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 12 C 0.46 24.90 7.36 85.11 0.63 25.52 16 13 O -0.65 -39.97 15.97 -4.63 -0.07 -40.05 16 14 C -0.20 -8.33 7.94 22.43 0.18 -8.15 16 15 C -0.04 -1.29 9.41 23.83 0.22 -1.06 16 16 C -0.10 -2.98 5.87 -20.13 -0.12 -3.10 16 17 C -0.08 -1.82 9.76 22.44 0.22 -1.60 16 18 C -0.14 -2.79 9.15 22.25 0.20 -2.58 16 19 C 0.11 2.22 5.64 38.47 0.22 2.44 16 20 N -0.49 -7.87 4.76 -694.20 -3.30 -11.18 16 21 C 0.01 0.12 4.32 86.31 0.37 0.49 16 22 C 0.06 0.72 7.01 72.01 0.50 1.22 16 23 O -0.40 -6.17 10.83 -148.98 -1.61 -7.78 16 24 C 0.06 0.70 7.01 72.01 0.50 1.20 16 25 C 0.02 0.24 5.40 86.31 0.47 0.71 16 26 C -0.17 -3.60 8.76 22.24 0.19 -3.40 16 27 C -0.08 -2.06 9.38 22.44 0.21 -1.85 16 28 H 0.05 1.78 7.48 -2.39 -0.02 1.76 16 29 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.09 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.08 4.04 5.63 -2.39 -0.01 4.02 16 32 H 0.07 2.62 6.42 -2.39 -0.02 2.61 16 33 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 34 H 0.14 4.95 3.97 -2.91 -0.01 4.93 16 35 H 0.11 4.48 7.45 -2.91 -0.02 4.46 16 36 H 0.14 2.90 8.06 -2.91 -0.02 2.88 16 37 H 0.15 2.18 7.18 -2.91 -0.02 2.16 16 38 H 0.05 0.77 7.51 -2.38 -0.02 0.76 16 39 H 0.10 1.20 7.22 -2.39 -0.02 1.19 16 40 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.11 1.13 6.83 -2.39 -0.02 1.12 16 46 H 0.15 2.38 5.78 -2.91 -0.02 2.37 16 47 H 0.13 3.16 6.16 -2.91 -0.02 3.14 16 Total: -1.00 -75.07 375.47 2.79 -72.28 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: 0.98 Total: 24.46 kcal Atomic # 6 Polarization: -15.09 SS G_CDS: 6.14 Total: -8.95 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: -4.68 Total: -84.75 kcal Atomic # 8 Polarization: -46.14 SS G_CDS: -1.69 Total: -47.82 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.79 kcal Total: -75.07 2.79 -72.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264703670.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.229 kcal (2) G-P(sol) polarization free energy of solvation -75.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds