Wall clock time and date at job start Tue Mar 31 2020 15:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46859 * 2 1 4 4 C 1.50697 * 109.47135 * 120.00345 * 2 1 3 5 5 H 1.08000 * 119.99888 * 119.99962 * 4 2 1 6 6 C 1.37882 * 120.00018 * 299.99824 * 4 2 1 7 7 N 1.31515 * 119.99683 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00139 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47330 * 59.99965 * 8 6 4 10 10 H 1.48500 * 109.47208 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47002 * 299.99725 * 8 6 4 12 12 N 1.46500 * 109.47127 * 240.00482 * 2 1 3 13 13 C 1.46499 * 119.99865 * 299.99748 * 12 2 1 14 14 C 1.34777 * 120.00376 * 119.99972 * 12 2 1 15 15 O 1.21279 * 119.99633 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00115 * 179.97438 * 14 12 2 17 17 C 1.52997 * 109.47212 * 180.02562 * 16 14 12 18 18 C 1.52992 * 109.47482 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.47319 * 180.02562 * 19 18 17 21 21 C 1.35912 * 117.00151 * 180.02562 * 20 19 18 22 22 C 1.38853 * 119.97820 * 359.72084 * 21 20 19 23 23 C 1.38251 * 120.24919 * 179.72825 * 22 21 20 24 24 C 1.37994 * 120.20793 * 0.54878 * 23 22 21 25 25 C 1.39626 * 119.96327 * 359.72908 * 24 23 22 26 26 C 1.43191 * 120.12521 * 179.97438 * 25 24 23 27 27 N 9.59156 * 164.14446 * 155.71255 * 17 1 2 28 28 C 1.38437 * 119.97939 * 180.02562 * 21 20 19 29 29 H 1.09000 * 109.46608 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46924 * 300.00032 * 1 2 3 31 31 H 1.09000 * 109.46876 * 60.00031 * 1 2 3 32 32 H 0.97001 * 119.99788 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.47413 * 270.00245 * 13 12 2 34 34 H 1.09003 * 109.47004 * 30.00026 * 13 12 2 35 35 H 1.09001 * 109.47557 * 150.00327 * 13 12 2 36 36 H 1.09002 * 109.47060 * 60.00000 * 16 14 12 37 37 H 1.09001 * 109.46927 * 300.00196 * 16 14 12 38 38 H 1.09002 * 109.47153 * 60.00002 * 17 16 14 39 39 H 1.09001 * 109.46832 * 300.00193 * 17 16 14 40 40 H 1.09002 * 109.47103 * 59.99753 * 18 17 16 41 41 H 1.08998 * 109.46862 * 300.00565 * 18 17 16 42 42 H 1.09002 * 109.47153 * 59.99783 * 19 18 17 43 43 H 1.09001 * 109.46832 * 299.99974 * 19 18 17 44 44 H 1.08008 * 119.87918 * 0.02562 * 22 21 20 45 45 H 1.08001 * 119.89725 * 180.28083 * 23 22 21 46 46 H 1.08004 * 120.02029 * 179.74887 * 24 23 22 47 47 H 1.07998 * 120.10864 * 359.97179 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.8076 -1.1191 4.0077 10 1 1.8270 -0.4201 5.2204 11 1 1.8280 -2.5199 4.0080 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7933 -0.0355 -2.0834 15 8 3.0866 1.1255 -1.8911 16 6 3.2960 -0.7460 -3.3136 17 6 4.1465 0.2155 -4.1461 18 6 4.6564 -0.5056 -5.3954 19 6 5.5063 0.4561 -6.2283 20 8 5.9821 -0.2173 -7.3954 21 6 6.7589 0.5009 -8.2486 22 6 7.0515 1.8292 -7.9693 23 6 7.8457 2.5633 -8.8304 24 6 8.3439 1.9840 -9.9795 25 6 8.0505 0.6507 -10.2719 26 6 8.5651 0.0462 -11.4636 27 7 8.9764 -0.4346 -12.4073 28 6 7.2527 -0.0905 -9.3988 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.7088 1.1611 3.4844 33 1 2.4158 -2.7377 -0.9718 34 1 0.6905 -2.3001 -0.9847 35 1 1.6239 -2.2851 -2.5003 36 1 2.4485 -1.0890 -3.9070 37 1 3.9017 -1.6022 -3.0166 38 1 4.9940 0.5580 -3.5525 39 1 3.5411 1.0719 -4.4431 40 1 3.8086 -0.8478 -5.9889 41 1 5.2615 -1.3623 -5.0988 42 1 6.3541 0.7987 -5.6350 43 1 4.9006 1.3124 -6.5248 44 1 6.6611 2.2892 -7.0734 45 1 8.0735 3.5948 -8.6052 46 1 8.9608 2.5616 -10.6521 47 1 7.0221 -1.1223 -9.6193 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264725790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:29 Heat of formation + Delta-G solvation = -31.705343 kcal Electronic energy + Delta-G solvation = -26107.264178 eV Core-core repulsion = 22255.317560 eV Total energy + Delta-G solvation = -3851.946618 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.67628 -39.18408 -38.41077 -36.65666 -35.60082 -34.72898 -32.87364 -31.89953 -31.03268 -29.95855 -28.75191 -26.14704 -25.37346 -25.16399 -23.82317 -22.92943 -21.58768 -20.63048 -19.69759 -18.22410 -17.07354 -16.73611 -16.67143 -16.60377 -16.41429 -16.05064 -15.44512 -15.24523 -14.63980 -14.50025 -14.35633 -14.04376 -14.01577 -13.65292 -13.14419 -13.04941 -12.95712 -12.65585 -12.47024 -12.38429 -12.23709 -11.90344 -11.88495 -11.69941 -11.50213 -11.42191 -11.14094 -11.05367 -11.03948 -10.83280 -10.70388 -10.63324 -10.27408 -10.17568 -9.54969 -9.19660 -8.93216 -8.75755 -8.43782 -7.59493 -6.08563 -4.16671 0.23348 0.86346 2.15451 2.48381 2.70675 3.26386 3.31587 3.32329 3.37711 3.40148 3.46148 3.96429 4.23914 4.38280 4.49487 4.53914 4.62701 4.64010 4.76546 4.89123 4.96174 5.08584 5.16331 5.22238 5.27049 5.34175 5.53028 5.58949 5.62982 5.66256 5.73851 5.78358 5.82832 5.85831 6.04331 6.06364 6.17898 6.28588 6.30990 6.74602 6.80597 6.93340 7.01144 7.04401 7.42405 7.51175 7.70432 8.00207 8.18778 8.53352 8.82151 9.05519 9.49989 10.96643 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.029017 B = 0.001554 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.707770 B =18009.250890 C =18165.651823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.595 5.595 13 C 0.087 3.913 14 C 0.501 3.499 15 O -0.556 6.556 16 C -0.138 4.138 17 C -0.100 4.100 18 C -0.118 4.118 19 C 0.057 3.943 20 O -0.312 6.312 21 C 0.136 3.864 22 C -0.180 4.180 23 C -0.078 4.078 24 C -0.112 4.112 25 C 0.008 3.992 26 C 0.257 3.743 27 N -0.413 5.413 28 C -0.108 4.108 29 H 0.030 0.970 30 H 0.093 0.907 31 H 0.011 0.989 32 H 0.264 0.736 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.052 0.948 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.134 0.866 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.498 -0.522 -21.372 23.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.156 3.844 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.326 5.326 13 C -0.057 4.057 14 C 0.288 3.712 15 O -0.436 6.436 16 C -0.178 4.178 17 C -0.138 4.138 18 C -0.156 4.156 19 C -0.017 4.017 20 O -0.225 6.225 21 C 0.090 3.910 22 C -0.199 4.199 23 C -0.096 4.096 24 C -0.133 4.133 25 C 0.005 3.995 26 C -0.059 4.059 27 N -0.088 5.088 28 C -0.129 4.129 29 H 0.049 0.951 30 H 0.112 0.888 31 H 0.030 0.970 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.085 0.915 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.152 0.848 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.105 -0.752 -22.560 24.732 hybrid contribution 0.077 -0.261 1.450 1.475 sum 10.183 -1.012 -21.111 23.460 Atomic orbital electron populations 1.22094 0.98307 0.99314 1.00814 1.18929 0.90823 0.94532 0.80075 0.91923 1.21285 1.31857 1.12970 0.90346 0.92392 1.24897 0.94956 0.94986 0.98965 1.69869 1.36311 1.22606 1.23850 0.86552 0.79222 0.79569 0.82004 1.20270 1.21168 1.20256 1.48255 1.49017 1.11653 1.23649 1.21555 1.01582 0.83256 0.99340 1.20422 0.79150 0.87154 0.84489 1.90639 1.58537 1.17290 1.77135 1.21651 1.00696 0.99667 0.95785 1.21210 1.00250 0.98119 0.94232 1.21585 0.99522 0.98554 0.95901 1.22993 0.98172 0.96316 0.84259 1.86089 1.63105 1.40037 1.33274 1.18736 0.91670 0.90309 0.90291 1.21632 1.02256 0.93727 1.02286 1.20923 0.95489 1.00202 0.92988 1.21083 1.01032 0.92975 0.98173 1.15631 1.00278 0.93719 0.89886 1.25607 0.93703 0.93578 0.92966 1.81284 1.08659 1.07956 1.10943 1.20344 0.99022 1.00927 0.92598 0.95134 0.88835 0.97019 0.92638 0.93350 0.90954 0.92889 0.89484 0.89392 0.90809 0.90914 0.90702 0.90644 0.91419 0.91459 0.84354 0.84474 0.84843 0.84134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.95 37.16 0.33 -3.12 16 2 C 0.26 6.45 2.64 -69.08 -0.18 6.27 16 3 H 0.06 1.83 6.90 -51.93 -0.36 1.48 16 4 C -0.53 -14.05 8.37 -34.44 -0.29 -14.33 16 5 H 0.06 1.52 7.65 -52.49 -0.40 1.12 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.88 11.32 55.43 0.63 -24.25 16 8 Si 0.90 20.80 29.54 -169.99 -5.02 15.78 16 9 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.59 -12.21 2.75 -175.26 -0.48 -12.69 16 13 C 0.09 1.38 9.48 59.85 0.57 1.95 16 14 C 0.50 9.70 7.67 -10.98 -0.08 9.62 16 15 O -0.56 -13.03 15.31 5.56 0.09 -12.94 16 16 C -0.14 -1.77 4.25 -27.88 -0.12 -1.89 16 17 C -0.10 -1.12 4.50 -26.74 -0.12 -1.24 16 18 C -0.12 -0.98 5.58 -26.74 -0.15 -1.13 16 19 C 0.06 0.43 4.74 37.16 0.18 0.61 16 20 O -0.31 -2.68 10.13 -19.46 -0.20 -2.88 16 21 C 0.14 1.03 6.68 -39.28 -0.26 0.77 16 22 C -0.18 -1.11 9.03 -39.35 -0.36 -1.46 16 23 C -0.08 -0.38 10.03 -39.67 -0.40 -0.78 16 24 C -0.11 -0.59 9.75 -39.15 -0.38 -0.97 16 25 C 0.01 0.06 5.73 -106.96 -0.61 -0.56 16 26 C 0.26 2.17 15.33 -22.47 -0.34 1.83 16 27 N -0.41 -4.47 18.54 41.84 0.78 -3.70 16 28 C -0.11 -0.76 9.69 -39.01 -0.38 -1.14 16 29 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 30 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 1.18 6.43 -51.93 -0.33 0.85 16 35 H 0.05 0.64 6.44 -51.93 -0.33 0.30 16 36 H 0.09 0.94 7.40 -51.93 -0.38 0.55 16 37 H 0.09 1.00 8.11 -51.93 -0.42 0.58 16 38 H 0.07 0.91 8.10 -51.93 -0.42 0.48 16 39 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.47 7.67 -51.93 -0.40 0.07 16 43 H 0.07 0.45 7.65 -51.93 -0.40 0.05 16 44 H 0.14 0.70 6.28 -52.48 -0.33 0.37 16 45 H 0.14 0.37 8.06 -52.49 -0.42 -0.06 16 46 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 47 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 395.14 15.07 5.95 5.95 Total: -1.00 -32.46 395.14 -7.91 -40.37 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.95 Total: -1.70 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -2.69 Total: -3.93 kcal Atomic # 7 Polarization: -41.56 SS G_CDS: 0.92 Total: -40.64 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.11 Total: -15.82 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.46 -7.91 -40.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264725790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.661 kcal (2) G-P(sol) polarization free energy of solvation -32.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds