Wall clock time and date at job start Tue Mar 31 2020 15:44:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46859 * 2 1 4 4 C 1.50697 * 109.47135 * 120.00345 * 2 1 3 5 5 H 1.08000 * 119.99888 * 119.99962 * 4 2 1 6 6 C 1.37882 * 120.00018 * 299.99824 * 4 2 1 7 7 N 1.31515 * 119.99683 * 0.02562 * 6 4 2 8 8 Si 1.86792 * 120.00139 * 180.02562 * 6 4 2 9 9 H 1.48501 * 109.47330 * 59.99965 * 8 6 4 10 10 H 1.48500 * 109.47208 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47002 * 299.99725 * 8 6 4 12 12 N 1.46500 * 109.47127 * 240.00482 * 2 1 3 13 13 C 1.46499 * 119.99865 * 299.99748 * 12 2 1 14 14 C 1.34777 * 120.00376 * 119.99972 * 12 2 1 15 15 O 1.21279 * 119.99633 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00115 * 179.97438 * 14 12 2 17 17 C 1.52997 * 109.47212 * 180.02562 * 16 14 12 18 18 C 1.52992 * 109.47482 * 180.02562 * 17 16 14 19 19 C 1.52997 * 109.47482 * 179.97438 * 18 17 16 20 20 O 1.42898 * 109.47319 * 180.02562 * 19 18 17 21 21 C 1.35912 * 117.00151 * 180.02562 * 20 19 18 22 22 C 1.38853 * 119.97820 * 359.72084 * 21 20 19 23 23 C 1.38251 * 120.24919 * 179.72825 * 22 21 20 24 24 C 1.37994 * 120.20793 * 0.54878 * 23 22 21 25 25 C 1.39626 * 119.96327 * 359.72908 * 24 23 22 26 26 C 1.43191 * 120.12521 * 179.97438 * 25 24 23 27 27 N 9.59156 * 164.14446 * 155.71255 * 17 1 2 28 28 C 1.38437 * 119.97939 * 180.02562 * 21 20 19 29 29 H 1.09000 * 109.46608 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46924 * 300.00032 * 1 2 3 31 31 H 1.09000 * 109.46876 * 60.00031 * 1 2 3 32 32 H 0.97001 * 119.99788 * 180.02562 * 7 6 4 33 33 H 1.09004 * 109.47413 * 270.00245 * 13 12 2 34 34 H 1.09003 * 109.47004 * 30.00026 * 13 12 2 35 35 H 1.09001 * 109.47557 * 150.00327 * 13 12 2 36 36 H 1.09002 * 109.47060 * 60.00000 * 16 14 12 37 37 H 1.09001 * 109.46927 * 300.00196 * 16 14 12 38 38 H 1.09002 * 109.47153 * 60.00002 * 17 16 14 39 39 H 1.09001 * 109.46832 * 300.00193 * 17 16 14 40 40 H 1.09002 * 109.47103 * 59.99753 * 18 17 16 41 41 H 1.08998 * 109.46862 * 300.00565 * 18 17 16 42 42 H 1.09002 * 109.47153 * 59.99783 * 19 18 17 43 43 H 1.09001 * 109.46832 * 299.99974 * 19 18 17 44 44 H 1.08008 * 119.87918 * 0.02562 * 22 21 20 45 45 H 1.08001 * 119.89725 * 180.28083 * 23 22 21 46 46 H 1.08004 * 120.02029 * 179.74887 * 24 23 22 47 47 H 1.07998 * 120.10864 * 359.97179 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.8076 -1.1191 4.0077 10 1 1.8270 -0.4201 5.2204 11 1 1.8280 -2.5199 4.0080 12 7 2.0184 -0.6905 -1.1962 13 6 1.6645 -2.0931 -1.4281 14 6 2.7933 -0.0355 -2.0834 15 8 3.0866 1.1255 -1.8911 16 6 3.2960 -0.7460 -3.3136 17 6 4.1465 0.2155 -4.1461 18 6 4.6564 -0.5056 -5.3954 19 6 5.5063 0.4561 -6.2283 20 8 5.9821 -0.2173 -7.3954 21 6 6.7589 0.5009 -8.2486 22 6 7.0515 1.8292 -7.9693 23 6 7.8457 2.5633 -8.8304 24 6 8.3439 1.9840 -9.9795 25 6 8.0505 0.6507 -10.2719 26 6 8.5651 0.0462 -11.4636 27 7 8.9764 -0.4346 -12.4073 28 6 7.2527 -0.0905 -9.3988 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.7088 1.1611 3.4844 33 1 2.4158 -2.7377 -0.9718 34 1 0.6905 -2.3001 -0.9847 35 1 1.6239 -2.2851 -2.5003 36 1 2.4485 -1.0890 -3.9070 37 1 3.9017 -1.6022 -3.0166 38 1 4.9940 0.5580 -3.5525 39 1 3.5411 1.0719 -4.4431 40 1 3.8086 -0.8478 -5.9889 41 1 5.2615 -1.3623 -5.0988 42 1 6.3541 0.7987 -5.6350 43 1 4.9006 1.3124 -6.5248 44 1 6.6611 2.2892 -7.0734 45 1 8.0735 3.5948 -8.6052 46 1 8.9608 2.5616 -10.6521 47 1 7.0221 -1.1223 -9.6193 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264725790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:28 Heat of formation + Delta-G solvation = -49.501354 kcal Electronic energy + Delta-G solvation = -26108.035871 eV Core-core repulsion = 22255.317560 eV Total energy + Delta-G solvation = -3852.718311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.19264 -40.69454 -38.99481 -37.36926 -37.16953 -35.74187 -34.74783 -32.40807 -31.99488 -31.15624 -29.83506 -27.54514 -27.26227 -26.07952 -24.60254 -23.42915 -22.77117 -21.83242 -20.28858 -19.72375 -18.48765 -17.80748 -17.50364 -17.36404 -17.21918 -17.00819 -16.86619 -16.53488 -16.04367 -15.36057 -15.11530 -14.96705 -14.75500 -14.59816 -14.32980 -14.20587 -14.02656 -13.79694 -13.51062 -13.42300 -13.28125 -12.99575 -12.90836 -12.83581 -12.74163 -12.65158 -12.59673 -12.44546 -12.18097 -12.15250 -12.10789 -11.83250 -11.72814 -11.39139 -11.16313 -10.60923 -10.41932 -10.03354 -9.26602 -9.25263 -8.13026 -6.29785 -0.27571 0.41030 1.42308 1.44284 1.50472 1.51808 1.89586 1.90689 2.11281 2.37620 2.58401 2.86345 2.88960 3.14530 3.79387 3.81717 3.91143 4.00303 4.07857 4.16897 4.23655 4.32051 4.39154 4.46993 4.50774 4.53060 4.69932 4.74675 4.79624 4.85091 4.89367 4.90454 4.91056 5.04503 5.07933 5.12280 5.18971 5.33159 5.33308 5.39434 5.45878 5.48765 5.63608 5.66482 5.70852 6.06951 6.18893 6.36224 6.41660 6.78709 6.92282 7.35799 7.55876 8.90794 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.029017 B = 0.001554 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.707770 B =18009.250890 C =18165.651823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.259 3.741 3 H 0.008 0.992 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.964 3.036 9 H -0.277 1.277 10 H -0.284 1.284 11 H -0.263 1.263 12 N -0.605 5.605 13 C 0.083 3.917 14 C 0.488 3.512 15 O -0.609 6.609 16 C -0.124 4.124 17 C -0.095 4.095 18 C -0.107 4.107 19 C 0.056 3.944 20 O -0.325 6.325 21 C 0.117 3.883 22 C -0.180 4.180 23 C -0.075 4.075 24 C -0.103 4.103 25 C -0.002 4.002 26 C 0.281 3.719 27 N -0.461 5.461 28 C -0.113 4.113 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.020 0.980 32 H 0.264 0.736 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.056 0.944 39 H 0.061 0.939 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.072 0.928 43 H 0.074 0.926 44 H 0.148 0.852 45 H 0.164 0.836 46 H 0.154 0.846 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.042 -1.798 -22.227 24.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.156 3.844 3 H 0.026 0.974 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.203 1.203 10 H -0.210 1.210 11 H -0.188 1.188 12 N -0.335 5.335 13 C -0.060 4.060 14 C 0.278 3.722 15 O -0.492 6.492 16 C -0.164 4.164 17 C -0.133 4.133 18 C -0.144 4.144 19 C -0.019 4.019 20 O -0.239 6.239 21 C 0.072 3.928 22 C -0.199 4.199 23 C -0.093 4.093 24 C -0.124 4.124 25 C -0.006 4.006 26 C -0.034 4.034 27 N -0.136 5.136 28 C -0.134 4.134 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.039 0.961 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.166 0.834 45 H 0.182 0.818 46 H 0.171 0.829 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.647 -2.070 -23.445 25.833 hybrid contribution -0.087 0.220 1.715 1.731 sum 10.560 -1.851 -21.731 24.231 Atomic orbital electron populations 1.21872 0.97299 1.00044 0.99867 1.18504 0.91567 0.92226 0.82065 0.97449 1.21569 1.31864 1.13021 0.91264 0.92207 1.25743 0.95113 0.95658 1.02041 1.70019 1.37323 1.23924 1.24421 0.85521 0.78399 0.78974 0.78181 1.20266 1.20985 1.18756 1.48289 1.49308 1.13466 1.22481 1.21817 1.01277 0.80348 1.02523 1.21644 0.78004 0.86815 0.85776 1.90609 1.60178 1.19906 1.78493 1.21682 1.02168 0.99740 0.92795 1.21121 0.99260 0.97816 0.95079 1.21425 1.00056 0.98383 0.94579 1.22986 0.98428 0.96287 0.84192 1.86040 1.63597 1.40623 1.33608 1.18867 0.92431 0.91011 0.90505 1.21861 1.01986 0.93265 1.02782 1.21240 0.94517 1.01295 0.92251 1.21365 1.00320 0.92283 0.98406 1.15669 1.01055 0.94456 0.89392 1.25815 0.92481 0.92452 0.92622 1.81301 1.10455 1.09409 1.12469 1.20387 0.99145 1.01160 0.92702 0.93390 0.91606 0.96085 0.92694 0.92763 0.91558 0.88193 0.86294 0.87045 0.92497 0.92038 0.89650 0.89982 0.90997 0.90770 0.83390 0.81805 0.82880 0.84066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.31 8.95 71.98 0.64 -5.67 16 2 C 0.26 13.34 2.64 44.25 0.12 13.46 16 3 H 0.01 0.47 6.90 -2.39 -0.02 0.45 16 4 C -0.54 -29.08 8.37 25.60 0.21 -28.86 16 5 H 0.06 3.12 7.65 -2.91 -0.02 3.10 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -52.76 11.32 21.45 0.24 -52.52 16 8 Si 0.96 42.67 29.54 68.60 2.03 44.69 16 9 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 12 N -0.61 -24.53 2.75 -826.78 -2.28 -26.80 16 13 C 0.08 2.41 9.48 127.77 1.21 3.62 16 14 C 0.49 18.72 7.67 87.66 0.67 19.40 16 15 O -0.61 -29.55 15.31 -3.03 -0.05 -29.60 16 16 C -0.12 -2.86 4.25 29.85 0.13 -2.73 16 17 C -0.09 -1.97 4.50 30.59 0.14 -1.83 16 18 C -0.11 -1.50 5.58 30.59 0.17 -1.33 16 19 C 0.06 0.74 4.74 71.98 0.34 1.08 16 20 O -0.32 -5.09 10.13 -92.56 -0.94 -6.03 16 21 C 0.12 1.62 6.68 22.46 0.15 1.77 16 22 C -0.18 -1.85 9.03 22.42 0.20 -1.65 16 23 C -0.08 -0.54 10.03 22.22 0.22 -0.31 16 24 C -0.10 -0.85 9.75 22.55 0.22 -0.63 16 25 C 0.00 -0.03 5.73 -21.38 -0.12 -0.15 16 26 C 0.28 4.60 15.33 88.33 1.35 5.96 16 27 N -0.46 -9.97 18.54 19.00 0.35 -9.62 16 28 C -0.11 -1.49 9.69 22.64 0.22 -1.27 16 29 H 0.05 2.06 6.66 -2.39 -0.02 2.05 16 30 H 0.07 3.51 6.07 -2.39 -0.01 3.50 16 31 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 33 H 0.05 1.52 8.14 -2.38 -0.02 1.50 16 34 H 0.07 2.01 6.43 -2.39 -0.02 1.99 16 35 H 0.10 1.95 6.44 -2.39 -0.02 1.94 16 36 H 0.12 2.03 7.40 -2.39 -0.02 2.01 16 37 H 0.11 2.11 8.11 -2.39 -0.02 2.09 16 38 H 0.06 1.37 8.10 -2.39 -0.02 1.35 16 39 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 40 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.07 0.88 7.67 -2.39 -0.02 0.86 16 43 H 0.07 0.87 7.65 -2.39 -0.02 0.85 16 44 H 0.15 1.19 6.28 -2.91 -0.02 1.17 16 45 H 0.16 0.29 8.06 -2.91 -0.02 0.27 16 46 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 47 H 0.14 1.74 8.06 -2.91 -0.02 1.71 16 Total: -1.00 -74.45 395.14 6.66 -67.78 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: 0.97 Total: 10.04 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 6.33 Total: 2.05 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -1.68 Total: -88.94 kcal Atomic # 8 Polarization: -34.64 SS G_CDS: -0.98 Total: -35.63 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -74.45 6.66 -67.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264725790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.283 kcal (2) G-P(sol) polarization free energy of solvation -74.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds