Wall clock time and date at job start Tue Mar 31 2020 15:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47128 * 2 1 4 4 C 1.50694 * 109.47080 * 239.99443 * 2 1 3 5 5 H 1.08000 * 120.00149 * 245.45188 * 4 2 1 6 6 C 1.37884 * 119.99866 * 65.46085 * 4 2 1 7 7 N 1.31508 * 120.00004 * 9.61309 * 6 4 2 8 8 Si 1.86794 * 119.99637 * 189.61758 * 6 4 2 9 9 H 1.48497 * 109.47355 * 84.99304 * 8 6 4 10 10 H 1.48503 * 109.46878 * 204.99277 * 8 6 4 11 11 H 1.48496 * 109.47606 * 324.98908 * 8 6 4 12 12 N 1.46508 * 109.47010 * 119.99505 * 2 1 3 13 13 C 1.46498 * 119.99683 * 59.99982 * 12 2 1 14 14 C 1.34772 * 120.00030 * 239.99942 * 12 2 1 15 15 O 1.21282 * 120.00097 * 0.02562 * 14 12 2 16 16 C 1.50699 * 119.99925 * 180.02562 * 14 12 2 17 17 C 1.53004 * 109.47204 * 180.02562 * 16 14 12 18 18 C 1.53001 * 109.47111 * 179.97438 * 17 16 14 19 19 C 1.52996 * 109.46813 * 179.97438 * 18 17 16 20 20 O 1.42899 * 109.47116 * 179.97438 * 19 18 17 21 21 C 1.35906 * 117.00380 * 179.97438 * 20 19 18 22 22 C 1.38862 * 119.97948 * 359.72963 * 21 20 19 23 23 C 1.38250 * 120.25165 * 179.72120 * 22 21 20 24 24 C 1.37997 * 120.20919 * 0.54988 * 23 22 21 25 25 C 1.39632 * 119.95966 * 359.72903 * 24 23 22 26 26 C 1.43204 * 120.12203 * 179.97438 * 25 24 23 27 27 N 9.59154 * 164.15358 * 204.31593 * 17 1 2 28 28 C 1.38437 * 119.98433 * 180.02562 * 21 20 19 29 29 H 1.08998 * 109.47250 * 183.28906 * 1 2 3 30 30 H 1.09005 * 109.47234 * 303.29148 * 1 2 3 31 31 H 1.09000 * 109.46855 * 63.28645 * 1 2 3 32 32 H 0.96996 * 120.00199 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47273 * 269.99589 * 13 12 2 34 34 H 1.09002 * 109.47485 * 30.00164 * 13 12 2 35 35 H 1.09003 * 109.46882 * 150.00104 * 13 12 2 36 36 H 1.08993 * 109.47631 * 59.99998 * 16 14 12 37 37 H 1.09007 * 109.46865 * 299.99954 * 16 14 12 38 38 H 1.08993 * 109.47196 * 59.99281 * 17 16 14 39 39 H 1.09007 * 109.46804 * 299.99541 * 17 16 14 40 40 H 1.09002 * 109.46907 * 59.99734 * 18 17 16 41 41 H 1.08997 * 109.46915 * 299.99386 * 18 17 16 42 42 H 1.09001 * 109.47457 * 59.99961 * 19 18 17 43 43 H 1.08997 * 109.47308 * 299.99671 * 19 18 17 44 44 H 1.08000 * 119.87418 * 0.02562 * 22 21 20 45 45 H 1.08000 * 119.89558 * 180.27433 * 23 22 21 46 46 H 1.08003 * 120.02119 * 179.74178 * 24 23 22 47 47 H 1.08002 * 120.10485 * 359.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.5787 -1.6371 -1.1336 6 6 1.7945 -0.1775 -2.4796 7 7 1.3003 1.0358 -2.5936 8 14 2.1744 -1.1790 -4.0099 9 1 1.0215 -2.0610 -4.3231 10 1 2.4215 -0.2629 -5.1523 11 1 3.3822 -2.0092 -3.7711 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4282 14 6 2.7932 -0.0355 2.0834 15 8 3.0858 1.1257 1.8916 16 6 3.2959 -0.7460 3.3136 17 6 4.1453 0.2159 4.1468 18 6 4.6552 -0.5053 5.3961 19 6 5.5051 0.4565 6.2289 20 8 5.9809 -0.2168 7.3961 21 6 6.7577 0.5013 8.2492 22 6 7.0598 1.8264 7.9641 23 6 7.8447 2.5638 8.8309 24 6 8.3428 1.9846 9.9801 25 6 8.0494 0.6512 10.2725 26 6 8.5649 0.0464 11.4639 27 7 8.9751 -0.4338 12.4081 28 6 7.2524 -0.0903 9.3989 29 1 -0.3633 -1.0259 0.0590 30 1 -0.3634 0.5641 0.8590 31 1 -0.3633 0.4620 -0.9180 32 1 1.1326 1.4106 -3.4724 33 1 0.7376 -2.1442 1.9995 34 1 1.5295 -2.5969 0.4710 35 1 2.4628 -2.5818 1.9866 36 1 3.9016 -1.6021 3.0168 37 1 2.4483 -1.0889 3.9071 38 1 3.5393 1.0718 4.4436 39 1 4.9930 0.5591 3.5536 40 1 5.2612 -1.3614 5.0995 41 1 3.8074 -0.8481 5.9892 42 1 4.8996 1.3129 6.5255 43 1 6.3529 0.7990 5.6357 44 1 6.6761 2.2840 7.0643 45 1 8.0724 3.5953 8.6057 46 1 8.9592 2.5623 10.6530 47 1 7.0217 -1.1220 9.6195 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264725792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:33 Heat of formation + Delta-G solvation = -33.505871 kcal Electronic energy + Delta-G solvation = -26105.840724 eV Core-core repulsion = 22253.816029 eV Total energy + Delta-G solvation = -3852.024695 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.67221 -39.17466 -38.40718 -36.65633 -35.58924 -34.71978 -32.83886 -31.89585 -31.03410 -30.00482 -28.80844 -26.12945 -25.36307 -25.15497 -23.82504 -22.92639 -21.60166 -20.65876 -19.69572 -18.22618 -17.06978 -16.72211 -16.68096 -16.60744 -16.41196 -16.03721 -15.42110 -15.26010 -14.63306 -14.49745 -14.32899 -14.02702 -14.02001 -13.64895 -13.13541 -13.06522 -12.95185 -12.56385 -12.45505 -12.38549 -12.22868 -11.95979 -11.84527 -11.71098 -11.62867 -11.43216 -11.14152 -11.05840 -11.00182 -10.90262 -10.73697 -10.63884 -10.29465 -10.19782 -9.54633 -9.25099 -8.90226 -8.75331 -8.41993 -7.60830 -6.10767 -4.15607 0.23729 0.86712 2.15823 2.48751 2.71053 3.25081 3.31766 3.33181 3.38054 3.40994 3.46425 3.96716 4.24279 4.38273 4.49942 4.54278 4.63235 4.64467 4.76958 4.89566 4.96614 5.09158 5.16977 5.21350 5.27496 5.34619 5.55548 5.59188 5.63477 5.65768 5.74167 5.78738 5.83346 5.86763 6.00026 6.06752 6.17954 6.31628 6.33658 6.66029 6.74054 6.93732 6.97590 7.01415 7.33703 7.53675 7.68424 7.91397 8.15916 8.52922 8.83724 9.06486 9.49542 10.96610 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.029074 B = 0.001558 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.828933 B =17969.814081 C =18167.028705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.254 3.746 3 H 0.070 0.930 4 C -0.530 4.530 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.895 3.105 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.595 5.595 13 C 0.083 3.917 14 C 0.501 3.499 15 O -0.555 6.555 16 C -0.138 4.138 17 C -0.100 4.100 18 C -0.118 4.118 19 C 0.057 3.943 20 O -0.312 6.312 21 C 0.136 3.864 22 C -0.180 4.180 23 C -0.078 4.078 24 C -0.112 4.112 25 C 0.008 3.992 26 C 0.257 3.743 27 N -0.414 5.414 28 C -0.108 4.108 29 H 0.031 0.969 30 H 0.015 0.985 31 H 0.075 0.925 32 H 0.264 0.736 33 H 0.042 0.958 34 H 0.079 0.921 35 H 0.054 0.946 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.067 0.933 43 H 0.068 0.932 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.134 0.866 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.969 -0.970 21.344 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.154 3.846 3 H 0.087 0.913 4 C -0.569 4.569 5 H 0.077 0.923 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.722 3.278 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.326 5.326 13 C -0.061 4.061 14 C 0.288 3.712 15 O -0.434 6.434 16 C -0.178 4.178 17 C -0.138 4.138 18 C -0.156 4.156 19 C -0.017 4.017 20 O -0.225 6.225 21 C 0.090 3.910 22 C -0.199 4.199 23 C -0.096 4.096 24 C -0.133 4.133 25 C 0.005 3.995 26 C -0.058 4.058 27 N -0.089 5.089 28 C -0.129 4.129 29 H 0.050 0.950 30 H 0.034 0.966 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.093 0.907 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.156 0.844 45 H 0.155 0.845 46 H 0.152 0.848 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 9.609 -1.176 22.540 24.530 hybrid contribution -0.087 -0.294 -1.463 1.495 sum 9.521 -1.470 21.077 23.174 Atomic orbital electron populations 1.22006 0.98662 0.98812 1.00354 1.18938 0.90376 0.95134 0.80136 0.91253 1.21272 1.36580 1.08571 0.90451 0.92253 1.24903 0.95140 0.94613 0.98959 1.69968 1.44337 1.13711 1.24087 0.86572 0.78666 0.80024 0.82509 1.20488 1.21200 1.20005 1.48237 1.49129 1.11561 1.23640 1.21604 0.98792 0.83442 1.02288 1.20421 0.79197 0.87189 0.84388 1.90646 1.58474 1.17263 1.77016 1.21649 1.00778 0.99628 0.95735 1.21214 1.00268 0.98120 0.94224 1.21586 0.99513 0.98547 0.95908 1.22994 0.98171 0.96319 0.84259 1.86087 1.63103 1.40039 1.33279 1.18738 0.91633 0.90340 0.90292 1.21633 1.02313 0.93781 1.02172 1.20923 0.95560 1.00169 0.92946 1.21084 1.00989 0.92975 0.98218 1.15634 1.00279 0.93715 0.89889 1.25605 0.93703 0.93577 0.92962 1.81276 1.08680 1.07967 1.10927 1.20342 0.99011 1.00896 0.92649 0.94984 0.96591 0.90647 0.92667 0.93961 0.90234 0.92711 0.89357 0.89542 0.90907 0.90798 0.90661 0.90696 0.91455 0.91413 0.84351 0.84473 0.84845 0.84139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.23 9.12 37.16 0.34 -2.89 16 2 C 0.25 6.37 2.50 -69.08 -0.17 6.19 16 3 H 0.07 2.04 6.84 -51.93 -0.36 1.69 16 4 C -0.53 -14.08 8.01 -34.44 -0.28 -14.36 16 5 H 0.06 1.54 7.16 -52.49 -0.38 1.17 16 6 C 0.07 1.81 5.17 -17.82 -0.09 1.72 16 7 N -0.88 -25.02 12.16 55.43 0.67 -24.35 16 8 Si 0.89 20.67 29.55 -169.99 -5.02 15.65 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.59 -12.17 2.75 -175.26 -0.48 -12.65 16 13 C 0.08 1.30 9.16 59.85 0.55 1.85 16 14 C 0.50 9.73 7.67 -10.99 -0.08 9.65 16 15 O -0.55 -13.08 15.31 5.56 0.09 -12.99 16 16 C -0.14 -1.77 4.25 -27.88 -0.12 -1.89 16 17 C -0.10 -1.13 4.50 -26.73 -0.12 -1.25 16 18 C -0.12 -0.98 5.58 -26.73 -0.15 -1.13 16 19 C 0.06 0.44 4.74 37.16 0.18 0.61 16 20 O -0.31 -2.69 10.13 -19.44 -0.20 -2.89 16 21 C 0.14 1.04 6.68 -39.28 -0.26 0.77 16 22 C -0.18 -1.11 9.03 -39.35 -0.36 -1.47 16 23 C -0.08 -0.39 10.03 -39.67 -0.40 -0.78 16 24 C -0.11 -0.59 9.75 -39.15 -0.38 -0.97 16 25 C 0.01 0.06 5.73 -106.95 -0.61 -0.56 16 26 C 0.26 2.18 15.33 -22.47 -0.34 1.84 16 27 N -0.41 -4.48 18.54 41.84 0.78 -3.70 16 28 C -0.11 -0.77 9.69 -39.01 -0.38 -1.14 16 29 H 0.03 0.67 7.56 -51.93 -0.39 0.27 16 30 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 1.91 6.84 -51.93 -0.36 1.55 16 32 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 33 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 1.35 6.92 -51.93 -0.36 0.99 16 35 H 0.05 0.68 6.44 -51.93 -0.33 0.35 16 36 H 0.09 1.00 7.40 -51.93 -0.38 0.62 16 37 H 0.09 0.94 8.11 -51.93 -0.42 0.52 16 38 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 39 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16 43 H 0.07 0.47 7.64 -51.93 -0.40 0.07 16 44 H 0.14 0.71 6.28 -52.49 -0.33 0.38 16 45 H 0.14 0.37 8.06 -52.49 -0.42 -0.05 16 46 H 0.13 0.47 8.06 -52.48 -0.42 0.05 16 47 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 LS Contribution 396.83 15.07 5.98 5.98 Total: -1.00 -32.66 396.83 -7.91 -40.57 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -7.04 Total: -1.80 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -2.68 Total: -3.81 kcal Atomic # 7 Polarization: -41.67 SS G_CDS: 0.97 Total: -40.71 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.11 Total: -15.88 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.66 -7.91 -40.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264725792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.065 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds