Wall clock time and date at job start Tue Mar 31 2020 15:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47128 * 2 1 4 4 C 1.50694 * 109.47080 * 239.99443 * 2 1 3 5 5 H 1.08000 * 120.00149 * 245.45188 * 4 2 1 6 6 C 1.37884 * 119.99866 * 65.46085 * 4 2 1 7 7 N 1.31508 * 120.00004 * 9.61309 * 6 4 2 8 8 Si 1.86794 * 119.99637 * 189.61758 * 6 4 2 9 9 H 1.48497 * 109.47355 * 84.99304 * 8 6 4 10 10 H 1.48503 * 109.46878 * 204.99277 * 8 6 4 11 11 H 1.48496 * 109.47606 * 324.98908 * 8 6 4 12 12 N 1.46508 * 109.47010 * 119.99505 * 2 1 3 13 13 C 1.46498 * 119.99683 * 59.99982 * 12 2 1 14 14 C 1.34772 * 120.00030 * 239.99942 * 12 2 1 15 15 O 1.21282 * 120.00097 * 0.02562 * 14 12 2 16 16 C 1.50699 * 119.99925 * 180.02562 * 14 12 2 17 17 C 1.53004 * 109.47204 * 180.02562 * 16 14 12 18 18 C 1.53001 * 109.47111 * 179.97438 * 17 16 14 19 19 C 1.52996 * 109.46813 * 179.97438 * 18 17 16 20 20 O 1.42899 * 109.47116 * 179.97438 * 19 18 17 21 21 C 1.35906 * 117.00380 * 179.97438 * 20 19 18 22 22 C 1.38862 * 119.97948 * 359.72963 * 21 20 19 23 23 C 1.38250 * 120.25165 * 179.72120 * 22 21 20 24 24 C 1.37997 * 120.20919 * 0.54988 * 23 22 21 25 25 C 1.39632 * 119.95966 * 359.72903 * 24 23 22 26 26 C 1.43204 * 120.12203 * 179.97438 * 25 24 23 27 27 N 9.59154 * 164.15358 * 204.31593 * 17 1 2 28 28 C 1.38437 * 119.98433 * 180.02562 * 21 20 19 29 29 H 1.08998 * 109.47250 * 183.28906 * 1 2 3 30 30 H 1.09005 * 109.47234 * 303.29148 * 1 2 3 31 31 H 1.09000 * 109.46855 * 63.28645 * 1 2 3 32 32 H 0.96996 * 120.00199 * 180.02562 * 7 6 4 33 33 H 1.08994 * 109.47273 * 269.99589 * 13 12 2 34 34 H 1.09002 * 109.47485 * 30.00164 * 13 12 2 35 35 H 1.09003 * 109.46882 * 150.00104 * 13 12 2 36 36 H 1.08993 * 109.47631 * 59.99998 * 16 14 12 37 37 H 1.09007 * 109.46865 * 299.99954 * 16 14 12 38 38 H 1.08993 * 109.47196 * 59.99281 * 17 16 14 39 39 H 1.09007 * 109.46804 * 299.99541 * 17 16 14 40 40 H 1.09002 * 109.46907 * 59.99734 * 18 17 16 41 41 H 1.08997 * 109.46915 * 299.99386 * 18 17 16 42 42 H 1.09001 * 109.47457 * 59.99961 * 19 18 17 43 43 H 1.08997 * 109.47308 * 299.99671 * 19 18 17 44 44 H 1.08000 * 119.87418 * 0.02562 * 22 21 20 45 45 H 1.08000 * 119.89558 * 180.27433 * 23 22 21 46 46 H 1.08003 * 120.02119 * 179.74178 * 24 23 22 47 47 H 1.08002 * 120.10485 * 359.97438 * 28 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2303 5 1 2.5787 -1.6371 -1.1336 6 6 1.7945 -0.1775 -2.4796 7 7 1.3003 1.0358 -2.5936 8 14 2.1744 -1.1790 -4.0099 9 1 1.0215 -2.0610 -4.3231 10 1 2.4215 -0.2629 -5.1523 11 1 3.3822 -2.0092 -3.7711 12 7 2.0183 -0.6905 1.1963 13 6 1.6644 -2.0931 1.4282 14 6 2.7932 -0.0355 2.0834 15 8 3.0858 1.1257 1.8916 16 6 3.2959 -0.7460 3.3136 17 6 4.1453 0.2159 4.1468 18 6 4.6552 -0.5053 5.3961 19 6 5.5051 0.4565 6.2289 20 8 5.9809 -0.2168 7.3961 21 6 6.7577 0.5013 8.2492 22 6 7.0598 1.8264 7.9641 23 6 7.8447 2.5638 8.8309 24 6 8.3428 1.9846 9.9801 25 6 8.0494 0.6512 10.2725 26 6 8.5649 0.0464 11.4639 27 7 8.9751 -0.4338 12.4081 28 6 7.2524 -0.0903 9.3989 29 1 -0.3633 -1.0259 0.0590 30 1 -0.3634 0.5641 0.8590 31 1 -0.3633 0.4620 -0.9180 32 1 1.1326 1.4106 -3.4724 33 1 0.7376 -2.1442 1.9995 34 1 1.5295 -2.5969 0.4710 35 1 2.4628 -2.5818 1.9866 36 1 3.9016 -1.6021 3.0168 37 1 2.4483 -1.0889 3.9071 38 1 3.5393 1.0718 4.4436 39 1 4.9930 0.5591 3.5536 40 1 5.2612 -1.3614 5.0995 41 1 3.8074 -0.8481 5.9892 42 1 4.8996 1.3129 6.5255 43 1 6.3529 0.7990 5.6357 44 1 6.6761 2.2840 7.0643 45 1 8.0724 3.5953 8.6057 46 1 8.9592 2.5623 10.6530 47 1 7.0217 -1.1220 9.6195 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264725792.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:32 Heat of formation + Delta-G solvation = -51.620540 kcal Electronic energy + Delta-G solvation = -26106.626235 eV Core-core repulsion = 22253.816029 eV Total energy + Delta-G solvation = -3852.810206 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.19223 -40.68323 -38.99489 -37.36717 -37.15250 -35.73871 -34.71482 -32.41074 -32.03395 -31.19412 -29.85461 -27.49315 -27.25248 -26.08529 -24.60918 -23.43095 -22.80111 -21.83992 -20.28866 -19.71888 -18.49607 -17.79385 -17.50035 -17.35691 -17.21733 -17.00453 -16.85518 -16.52539 -16.01260 -15.36249 -15.11450 -14.97309 -14.75186 -14.56119 -14.29854 -14.18161 -13.97891 -13.80710 -13.65031 -13.44175 -13.27274 -12.97815 -12.88422 -12.86872 -12.71279 -12.67138 -12.63377 -12.45094 -12.25509 -12.16174 -12.07032 -11.83184 -11.72698 -11.39160 -11.20801 -10.56410 -10.42222 -10.03366 -9.26641 -9.25217 -8.15388 -6.28553 -0.27524 0.41037 1.42939 1.43357 1.50609 1.52958 1.89672 1.91814 2.11274 2.38257 2.58723 2.86360 2.88976 3.13682 3.79544 3.82620 3.91322 4.00351 4.07884 4.16976 4.23687 4.32904 4.39387 4.47288 4.52119 4.53117 4.70965 4.76004 4.79107 4.83624 4.86333 4.89974 4.90979 5.03471 5.05482 5.11290 5.18994 5.33181 5.33373 5.39476 5.45630 5.49866 5.57903 5.63716 5.70090 6.04140 6.16028 6.36253 6.41632 6.80740 6.92827 7.36230 7.56913 8.91330 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.029074 B = 0.001558 C = 0.001541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.828933 B =17969.814081 C =18167.028705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.256 3.744 3 H 0.012 0.988 4 C -0.540 4.540 5 H 0.063 0.937 6 C 0.015 3.985 7 N -0.920 5.920 8 Si 0.963 3.037 9 H -0.267 1.267 10 H -0.289 1.289 11 H -0.269 1.269 12 N -0.605 5.605 13 C 0.078 3.922 14 C 0.487 3.513 15 O -0.609 6.609 16 C -0.124 4.124 17 C -0.095 4.095 18 C -0.107 4.107 19 C 0.056 3.944 20 O -0.324 6.324 21 C 0.117 3.883 22 C -0.180 4.180 23 C -0.075 4.075 24 C -0.103 4.103 25 C -0.002 4.002 26 C 0.281 3.719 27 N -0.461 5.461 28 C -0.113 4.113 29 H 0.053 0.947 30 H 0.023 0.977 31 H 0.047 0.953 32 H 0.264 0.736 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.148 0.852 45 H 0.164 0.836 46 H 0.154 0.846 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.391 -2.480 22.218 24.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.154 3.846 3 H 0.030 0.970 4 C -0.578 4.578 5 H 0.081 0.919 6 C -0.185 4.185 7 N -0.558 5.558 8 Si 0.788 3.212 9 H -0.192 1.192 10 H -0.215 1.215 11 H -0.193 1.193 12 N -0.335 5.335 13 C -0.064 4.064 14 C 0.277 3.723 15 O -0.492 6.492 16 C -0.163 4.163 17 C -0.133 4.133 18 C -0.144 4.144 19 C -0.019 4.019 20 O -0.239 6.239 21 C 0.072 3.928 22 C -0.199 4.199 23 C -0.093 4.093 24 C -0.124 4.124 25 C -0.006 4.006 26 C -0.034 4.034 27 N -0.136 5.136 28 C -0.134 4.134 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.112 0.888 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.166 0.834 45 H 0.182 0.818 46 H 0.171 0.829 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 10.027 -2.734 23.444 25.644 hybrid contribution -0.210 0.254 -1.725 1.756 sum 9.817 -2.479 21.719 23.963 Atomic orbital electron populations 1.21790 0.97414 0.99917 0.99246 1.18519 0.91306 0.92688 0.82107 0.97021 1.21584 1.36370 1.08577 0.91294 0.91853 1.25769 0.95084 0.95470 1.02194 1.70116 1.45647 1.15381 1.24683 0.85504 0.78902 0.78452 0.78370 1.19203 1.21458 1.19318 1.48281 1.49323 1.13456 1.22464 1.21872 1.01480 0.80531 1.02534 1.21644 0.78053 0.86858 0.85718 1.90617 1.60178 1.19964 1.78436 1.21677 1.02217 0.99705 0.92742 1.21125 0.99265 0.97819 0.95092 1.21425 1.00043 0.98381 0.94568 1.22985 0.98422 0.96288 0.84200 1.86038 1.63595 1.40614 1.33606 1.18868 0.92396 0.91038 0.90511 1.21861 1.02036 0.93330 1.02681 1.21238 0.94591 1.01258 0.92217 1.21366 1.00275 0.92289 0.98442 1.15672 1.01050 0.94448 0.89398 1.25810 0.92484 0.92453 0.92618 1.81294 1.10468 1.09417 1.12447 1.20386 0.99125 1.01135 0.92742 0.92774 0.95766 0.93433 0.92754 0.91563 0.91626 0.88781 0.86888 0.86441 0.92104 0.92512 0.89943 0.89659 0.90804 0.90995 0.83412 0.81815 0.82876 0.84055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.84 9.12 71.98 0.66 -5.19 16 2 C 0.26 13.14 2.50 44.24 0.11 13.25 16 3 H 0.01 0.73 6.84 -2.39 -0.02 0.72 16 4 C -0.54 -28.97 8.01 25.60 0.20 -28.76 16 5 H 0.06 3.26 7.16 -2.91 -0.02 3.24 16 6 C 0.01 0.80 5.17 84.66 0.44 1.23 16 7 N -0.92 -53.73 12.16 21.45 0.26 -53.46 16 8 Si 0.96 42.51 29.55 68.60 2.03 44.54 16 9 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 12 N -0.60 -24.38 2.75 -826.80 -2.28 -26.65 16 13 C 0.08 2.23 9.16 127.77 1.17 3.40 16 14 C 0.49 18.78 7.67 87.66 0.67 19.45 16 15 O -0.61 -29.85 15.31 -3.04 -0.05 -29.90 16 16 C -0.12 -2.86 4.25 29.85 0.13 -2.73 16 17 C -0.09 -1.99 4.50 30.60 0.14 -1.86 16 18 C -0.11 -1.51 5.58 30.59 0.17 -1.34 16 19 C 0.06 0.75 4.74 71.98 0.34 1.09 16 20 O -0.32 -5.12 10.13 -92.49 -0.94 -6.06 16 21 C 0.12 1.63 6.68 22.47 0.15 1.78 16 22 C -0.18 -1.87 9.03 22.42 0.20 -1.67 16 23 C -0.08 -0.54 10.03 22.22 0.22 -0.32 16 24 C -0.10 -0.86 9.75 22.55 0.22 -0.64 16 25 C 0.00 -0.03 5.73 -21.37 -0.12 -0.15 16 26 C 0.28 4.61 15.33 88.33 1.35 5.97 16 27 N -0.46 -9.98 18.54 19.00 0.35 -9.63 16 28 C -0.11 -1.50 9.69 22.64 0.22 -1.28 16 29 H 0.05 2.23 7.56 -2.39 -0.02 2.21 16 30 H 0.02 1.04 8.14 -2.38 -0.02 1.02 16 31 H 0.05 2.46 6.84 -2.39 -0.02 2.45 16 32 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.06 2.07 6.92 -2.39 -0.02 2.05 16 35 H 0.09 1.93 6.44 -2.39 -0.02 1.91 16 36 H 0.11 2.10 7.40 -2.39 -0.02 2.09 16 37 H 0.12 2.04 8.11 -2.38 -0.02 2.02 16 38 H 0.06 1.42 8.10 -2.39 -0.02 1.40 16 39 H 0.06 1.38 8.10 -2.38 -0.02 1.36 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 0.88 7.67 -2.39 -0.02 0.86 16 43 H 0.07 0.89 7.64 -2.39 -0.02 0.87 16 44 H 0.15 1.21 6.28 -2.91 -0.02 1.20 16 45 H 0.16 0.31 8.06 -2.91 -0.02 0.29 16 46 H 0.15 0.65 8.06 -2.91 -0.02 0.63 16 47 H 0.14 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -75.33 396.83 6.62 -68.71 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 0.97 Total: 10.22 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 6.28 Total: 2.24 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -1.66 Total: -89.75 kcal Atomic # 8 Polarization: -34.97 SS G_CDS: -0.98 Total: -35.95 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -75.33 6.62 -68.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264725792.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.089 kcal (2) G-P(sol) polarization free energy of solvation -75.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds