Wall clock time and date at job start Tue Mar 31 2020 16:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47150 * 2 1 4 4 C 1.45646 * 117.70676 * 89.99564 * 3 2 1 5 5 C 1.52993 * 110.77273 * 158.09681 * 4 3 2 6 6 N 1.47271 * 108.18551 * 46.72943 * 5 4 3 7 7 C 1.34773 * 121.35204 * 118.51562 * 6 5 4 8 8 O 1.21582 * 119.99821 * 179.36993 * 7 6 5 9 9 C 1.47644 * 120.00059 * 359.37324 * 7 6 5 10 10 C 1.40016 * 119.89753 * 235.22677 * 9 7 6 11 11 C 1.36312 * 120.10670 * 179.75789 * 10 9 7 12 12 C 1.40892 * 119.89459 * 0.52114 * 11 10 9 13 13 C 1.41106 * 120.10720 * 179.71321 * 12 11 10 14 14 H 1.07994 * 119.99996 * 207.18206 * 13 12 11 15 15 C 1.40230 * 119.99560 * 27.18624 * 13 12 11 16 16 N 1.30642 * 120.00440 * 16.75947 * 15 13 12 17 17 Si 1.86801 * 119.99655 * 196.75603 * 15 13 12 18 18 H 1.48501 * 109.47095 * 60.00396 * 17 15 13 19 19 H 1.48504 * 109.47085 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47388 * 300.00229 * 17 15 13 21 21 C 1.40891 * 119.78854 * 359.73707 * 12 11 10 22 22 C 1.36318 * 119.89406 * 359.97438 * 21 12 11 23 23 C 1.47041 * 117.29399 * 298.49473 * 6 5 4 24 24 C 1.53003 * 109.56916 * 162.56115 * 23 6 5 25 25 C 1.53004 * 109.56913 * 282.79726 * 23 6 5 26 26 C 1.33383 * 117.70660 * 269.74006 * 3 2 1 27 27 O 1.21286 * 118.48442 * 4.29346 * 26 3 2 28 28 H 1.09002 * 109.47462 * 300.00209 * 1 2 3 29 29 H 1.08999 * 109.47490 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47466 * 59.99946 * 1 2 3 31 31 H 1.09001 * 109.46947 * 119.99982 * 2 1 3 32 32 H 1.08996 * 109.47072 * 239.99625 * 2 1 3 33 33 H 1.08996 * 109.22276 * 278.43019 * 4 3 2 34 34 H 1.09009 * 109.21730 * 37.81526 * 4 3 2 35 35 H 1.09005 * 109.71955 * 166.40158 * 5 4 3 36 36 H 1.09004 * 109.72209 * 287.05339 * 5 4 3 37 37 H 1.07998 * 119.93936 * 0.02588 * 10 9 7 38 38 H 1.07998 * 120.05627 * 180.22778 * 11 10 9 39 39 H 0.96997 * 120.00153 * 179.97438 * 16 15 13 40 40 H 1.08003 * 120.05011 * 179.97438 * 21 12 11 41 41 H 1.07996 * 119.94307 * 179.97438 * 22 21 12 42 42 H 1.09003 * 109.46885 * 69.64001 * 24 23 6 43 43 H 1.09002 * 109.47283 * 189.64461 * 24 23 6 44 44 H 1.09003 * 109.46953 * 309.63877 * 24 23 6 45 45 H 1.09000 * 109.46684 * 60.00111 * 25 23 6 46 46 H 1.08995 * 109.47065 * 180.02562 * 25 23 6 47 47 H 1.09002 * 109.47032 * 299.99937 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2439 2.0197 1.2895 5 6 3.2228 3.1875 1.1528 6 7 2.8118 3.9986 -0.0056 7 6 2.4497 5.2892 0.1351 8 8 2.1256 5.9393 -0.8399 9 6 2.4467 5.9134 1.4730 10 6 1.2831 6.5249 1.9553 11 6 1.2742 7.0982 3.1919 12 6 2.4415 7.0845 3.9808 13 6 2.4389 7.6819 5.2591 14 1 3.3571 8.0681 5.6765 15 6 1.2442 7.7741 5.9875 16 7 0.2175 7.0382 5.6543 17 14 1.1208 8.9493 7.4343 18 1 1.3638 10.3376 6.9665 19 1 -0.2361 8.8590 8.0311 20 1 2.1363 8.5860 8.4551 21 6 3.6114 6.4727 3.4890 22 6 3.6091 5.8968 2.2534 23 6 2.8129 3.3434 -1.3220 24 6 1.9706 4.1620 -2.3026 25 6 4.2482 3.2400 -1.8417 26 6 2.2301 1.9641 -1.1809 27 8 1.9351 1.3554 -2.1876 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.2952 2.3904 1.6772 34 1 2.6545 1.2878 1.9853 35 1 3.1969 3.7968 2.0563 36 1 4.2315 2.8054 0.9950 37 1 0.3901 6.5385 1.3481 38 1 0.3751 7.5665 3.5645 39 1 -0.6088 7.1018 6.1584 40 1 4.5087 6.4601 4.0900 41 1 4.5056 5.4280 1.8755 42 1 2.4822 5.0979 -2.5275 43 1 1.8300 3.5945 -3.2225 44 1 0.9997 4.3768 -1.8562 45 1 4.8457 2.6530 -1.1442 46 1 4.2471 2.7545 -2.8176 47 1 4.6742 4.2391 -1.9338 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275404674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:32 Heat of formation + Delta-G solvation = -34.690629 kcal Electronic energy + Delta-G solvation = -29330.633646 eV Core-core repulsion = 25478.557576 eV Total energy + Delta-G solvation = -3852.076070 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.13415 -39.12654 -37.36623 -36.50220 -35.55032 -33.99692 -32.55694 -31.11848 -30.02397 -29.52716 -28.51534 -27.24719 -25.97322 -24.80635 -23.36265 -22.36717 -21.61164 -21.01273 -19.68614 -17.82544 -17.57855 -17.46817 -16.67388 -16.08095 -15.56950 -15.40800 -15.24819 -14.62355 -14.39936 -13.99477 -13.97890 -13.86907 -13.38620 -13.26782 -12.99009 -12.77826 -12.45576 -12.34699 -12.23587 -12.17378 -12.07685 -11.98373 -11.81593 -11.71291 -11.54376 -11.36058 -11.25835 -11.17804 -11.01437 -10.96563 -10.63428 -10.07187 -9.99044 -9.61290 -9.38112 -8.83617 -8.67275 -8.39981 -7.77439 -7.56553 -7.02507 -4.62283 2.30724 2.58148 2.80353 2.88563 2.93619 2.95037 2.99195 3.18856 3.50790 3.74708 4.35207 4.40799 4.70635 4.86500 5.00696 5.03384 5.05533 5.18037 5.22329 5.32153 5.44859 5.49959 5.56332 5.62432 5.72651 5.79224 5.82695 5.83414 5.96983 6.00826 6.04862 6.10059 6.15891 6.22565 6.31952 6.51533 6.72666 6.79968 6.81384 6.96476 7.04786 7.35321 7.38156 7.50716 7.68721 7.80856 7.89863 8.03095 8.09762 8.37942 8.61304 8.70044 8.78649 9.90930 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017823 B = 0.003273 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.652026 B = 8552.835434 C = 9268.377625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.103 3.897 3 N -0.601 5.601 4 C 0.097 3.903 5 C 0.089 3.911 6 N -0.615 5.615 7 C 0.588 3.412 8 O -0.546 6.546 9 C -0.273 4.273 10 C -0.048 4.048 11 C -0.170 4.170 12 C 0.127 3.873 13 C -0.451 4.451 14 H 0.083 0.917 15 C 0.077 3.923 16 N -0.777 5.777 17 Si 0.911 3.089 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.263 1.263 21 C -0.229 4.229 22 C -0.057 4.057 23 C 0.161 3.839 24 C -0.126 4.126 25 C -0.147 4.147 26 C 0.521 3.479 27 O -0.545 6.545 28 H 0.056 0.944 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.127 0.873 36 H 0.072 0.928 37 H 0.091 0.909 38 H 0.118 0.882 39 H 0.286 0.714 40 H 0.098 0.902 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.073 0.927 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.462 -10.526 -4.051 11.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.020 4.020 3 N -0.333 5.333 4 C -0.026 4.026 5 C -0.034 4.034 6 N -0.351 5.351 7 C 0.381 3.619 8 O -0.424 6.424 9 C -0.277 4.277 10 C -0.067 4.067 11 C -0.190 4.190 12 C 0.124 3.876 13 C -0.479 4.479 14 H 0.101 0.899 15 C -0.144 4.144 16 N -0.401 5.401 17 Si 0.735 3.265 18 H -0.185 1.185 19 H -0.201 1.201 20 H -0.188 1.188 21 C -0.248 4.248 22 C -0.076 4.076 23 C 0.073 3.927 24 C -0.183 4.183 25 C -0.205 4.205 26 C 0.308 3.692 27 O -0.422 6.422 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.144 0.856 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.097 0.903 40 H 0.116 0.884 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.092 0.908 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.873 -10.524 -5.013 12.006 hybrid contribution -0.164 0.304 1.002 1.059 sum 2.710 -10.220 -4.011 11.309 Atomic orbital electron populations 1.22084 0.95749 1.02028 1.02587 1.21527 0.94884 0.82547 1.03009 1.47358 1.65167 1.14644 1.06144 1.21892 1.00891 0.95573 0.84281 1.22253 0.96746 0.92299 0.92139 1.48432 1.68958 1.11490 1.06232 1.18795 0.73828 0.79452 0.89791 1.90685 1.48766 1.62602 1.40350 1.18789 0.97346 1.16084 0.95470 1.20296 0.95022 0.95989 0.95438 1.20929 0.99943 1.04919 0.93165 1.17723 0.90860 0.86959 0.92081 1.19737 0.95096 1.32687 1.00383 0.89908 1.26030 0.94881 0.94419 0.99093 1.69710 1.03396 1.30141 1.36841 0.86305 0.78424 0.81348 0.80427 1.18544 1.20112 1.18751 1.20699 0.99336 1.07602 0.97192 1.20265 0.95020 0.98445 0.93895 1.20665 0.97231 0.89135 0.85658 1.22115 1.00009 0.99743 0.96438 1.22072 0.93669 1.03295 1.01509 1.20312 0.77762 0.88236 0.82925 1.90672 1.51816 1.63999 1.35735 0.92448 0.91736 0.92179 0.90554 0.89816 0.90798 0.89528 0.85561 0.91008 0.89062 0.86420 0.90257 0.88431 0.88997 0.88753 0.92549 0.92072 0.92364 0.90791 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.78 10.23 37.16 0.38 -1.40 16 2 C 0.10 1.11 5.89 -4.05 -0.02 1.09 16 3 N -0.60 -7.80 2.81 -174.90 -0.49 -8.29 16 4 C 0.10 1.14 6.57 -4.51 -0.03 1.11 16 5 C 0.09 1.17 5.73 -3.62 -0.02 1.14 16 6 N -0.61 -9.88 2.62 -160.42 -0.42 -10.30 16 7 C 0.59 11.53 6.95 -12.42 -0.09 11.44 16 8 O -0.55 -11.92 13.09 5.29 0.07 -11.85 16 9 C -0.27 -5.68 4.87 -104.73 -0.51 -6.19 16 10 C -0.05 -1.09 9.69 -39.61 -0.38 -1.47 16 11 C -0.17 -4.09 8.61 -39.27 -0.34 -4.43 16 12 C 0.13 3.05 5.55 -106.80 -0.59 2.46 16 13 C -0.45 -10.80 9.04 -37.75 -0.34 -11.14 16 14 H 0.08 1.89 7.90 -52.49 -0.41 1.48 16 15 C 0.08 1.74 5.14 -17.31 -0.09 1.65 16 16 N -0.78 -18.26 11.06 55.56 0.61 -17.65 16 17 Si 0.91 17.00 29.59 -169.99 -5.03 11.97 16 18 H -0.26 -4.90 7.11 56.52 0.40 -4.50 16 19 H -0.28 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 21 C -0.23 -4.94 9.73 -39.27 -0.38 -5.32 16 22 C -0.06 -1.13 7.41 -39.61 -0.29 -1.42 16 23 C 0.16 2.48 0.98 -132.82 -0.13 2.35 16 24 C -0.13 -2.09 6.90 37.16 0.26 -1.84 16 25 C -0.15 -1.90 8.65 37.16 0.32 -1.58 16 26 C 0.52 8.02 6.33 -11.75 -0.07 7.95 16 27 O -0.55 -9.53 15.47 5.55 0.09 -9.45 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.08 0.62 7.81 -51.93 -0.41 0.22 16 32 H 0.08 0.98 7.22 -51.93 -0.38 0.60 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.75 7.85 -51.92 -0.41 0.35 16 35 H 0.13 1.82 4.81 -51.93 -0.25 1.57 16 36 H 0.07 0.79 7.52 -51.93 -0.39 0.40 16 37 H 0.09 2.00 8.06 -52.49 -0.42 1.58 16 38 H 0.12 2.94 6.31 -52.49 -0.33 2.60 16 39 H 0.29 6.12 8.29 -40.82 -0.34 5.79 16 40 H 0.10 1.95 8.06 -52.48 -0.42 1.53 16 41 H 0.09 1.56 7.61 -52.49 -0.40 1.16 16 42 H 0.09 1.65 6.38 -51.93 -0.33 1.32 16 43 H 0.06 0.88 7.60 -51.93 -0.39 0.49 16 44 H 0.06 1.13 7.33 -51.93 -0.38 0.75 16 45 H 0.06 0.68 7.51 -51.93 -0.39 0.29 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 373.34 15.07 5.63 5.63 Total: -1.00 -27.89 373.34 -8.87 -36.76 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.99 Total: 8.78 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -2.34 Total: -5.61 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: -0.30 Total: -36.23 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: 0.16 Total: -21.30 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.97 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -27.89 -8.87 -36.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275404674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.072 kcal (2) G-P(sol) polarization free energy of solvation -27.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds