Wall clock time and date at job start Tue Mar 31 2020 16:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46496 * 109.47150 * 2 1 4 4 C 1.45646 * 117.70676 * 89.99564 * 3 2 1 5 5 C 1.52993 * 110.77273 * 158.09681 * 4 3 2 6 6 N 1.47271 * 108.18551 * 46.72943 * 5 4 3 7 7 C 1.34773 * 121.35204 * 118.51562 * 6 5 4 8 8 O 1.21582 * 119.99821 * 179.36993 * 7 6 5 9 9 C 1.47644 * 120.00059 * 359.37324 * 7 6 5 10 10 C 1.40016 * 119.89753 * 235.22677 * 9 7 6 11 11 C 1.36312 * 120.10670 * 179.75789 * 10 9 7 12 12 C 1.40892 * 119.89459 * 0.52114 * 11 10 9 13 13 C 1.41106 * 120.10720 * 179.71321 * 12 11 10 14 14 H 1.07994 * 119.99996 * 207.18206 * 13 12 11 15 15 C 1.40230 * 119.99560 * 27.18624 * 13 12 11 16 16 N 1.30642 * 120.00440 * 16.75947 * 15 13 12 17 17 Si 1.86801 * 119.99655 * 196.75603 * 15 13 12 18 18 H 1.48501 * 109.47095 * 60.00396 * 17 15 13 19 19 H 1.48504 * 109.47085 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47388 * 300.00229 * 17 15 13 21 21 C 1.40891 * 119.78854 * 359.73707 * 12 11 10 22 22 C 1.36318 * 119.89406 * 359.97438 * 21 12 11 23 23 C 1.47041 * 117.29399 * 298.49473 * 6 5 4 24 24 C 1.53003 * 109.56916 * 162.56115 * 23 6 5 25 25 C 1.53004 * 109.56913 * 282.79726 * 23 6 5 26 26 C 1.33383 * 117.70660 * 269.74006 * 3 2 1 27 27 O 1.21286 * 118.48442 * 4.29346 * 26 3 2 28 28 H 1.09002 * 109.47462 * 300.00209 * 1 2 3 29 29 H 1.08999 * 109.47490 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47466 * 59.99946 * 1 2 3 31 31 H 1.09001 * 109.46947 * 119.99982 * 2 1 3 32 32 H 1.08996 * 109.47072 * 239.99625 * 2 1 3 33 33 H 1.08996 * 109.22276 * 278.43019 * 4 3 2 34 34 H 1.09009 * 109.21730 * 37.81526 * 4 3 2 35 35 H 1.09005 * 109.71955 * 166.40158 * 5 4 3 36 36 H 1.09004 * 109.72209 * 287.05339 * 5 4 3 37 37 H 1.07998 * 119.93936 * 0.02588 * 10 9 7 38 38 H 1.07998 * 120.05627 * 180.22778 * 11 10 9 39 39 H 0.96997 * 120.00153 * 179.97438 * 16 15 13 40 40 H 1.08003 * 120.05011 * 179.97438 * 21 12 11 41 41 H 1.07996 * 119.94307 * 179.97438 * 22 21 12 42 42 H 1.09003 * 109.46885 * 69.64001 * 24 23 6 43 43 H 1.09002 * 109.47283 * 189.64461 * 24 23 6 44 44 H 1.09003 * 109.46953 * 309.63877 * 24 23 6 45 45 H 1.09000 * 109.46684 * 60.00111 * 25 23 6 46 46 H 1.08995 * 109.47065 * 180.02562 * 25 23 6 47 47 H 1.09002 * 109.47032 * 299.99937 * 25 23 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2439 2.0197 1.2895 5 6 3.2228 3.1875 1.1528 6 7 2.8118 3.9986 -0.0056 7 6 2.4497 5.2892 0.1351 8 8 2.1256 5.9393 -0.8399 9 6 2.4467 5.9134 1.4730 10 6 1.2831 6.5249 1.9553 11 6 1.2742 7.0982 3.1919 12 6 2.4415 7.0845 3.9808 13 6 2.4389 7.6819 5.2591 14 1 3.3571 8.0681 5.6765 15 6 1.2442 7.7741 5.9875 16 7 0.2175 7.0382 5.6543 17 14 1.1208 8.9493 7.4343 18 1 1.3638 10.3376 6.9665 19 1 -0.2361 8.8590 8.0311 20 1 2.1363 8.5860 8.4551 21 6 3.6114 6.4727 3.4890 22 6 3.6091 5.8968 2.2534 23 6 2.8129 3.3434 -1.3220 24 6 1.9706 4.1620 -2.3026 25 6 4.2482 3.2400 -1.8417 26 6 2.2301 1.9641 -1.1809 27 8 1.9351 1.3554 -2.1876 28 1 -0.3634 0.5139 0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.2952 2.3904 1.6772 34 1 2.6545 1.2878 1.9853 35 1 3.1969 3.7968 2.0563 36 1 4.2315 2.8054 0.9950 37 1 0.3901 6.5385 1.3481 38 1 0.3751 7.5665 3.5645 39 1 -0.6088 7.1018 6.1584 40 1 4.5087 6.4601 4.0900 41 1 4.5056 5.4280 1.8755 42 1 2.4822 5.0979 -2.5275 43 1 1.8300 3.5945 -3.2225 44 1 0.9997 4.3768 -1.8562 45 1 4.8457 2.6530 -1.1442 46 1 4.2471 2.7545 -2.8176 47 1 4.6742 4.2391 -1.9338 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275404674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:31 Heat of formation + Delta-G solvation = -48.818707 kcal Electronic energy + Delta-G solvation = -29331.246285 eV Core-core repulsion = 25478.557576 eV Total energy + Delta-G solvation = -3852.688710 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.36981 -40.56376 -39.02117 -37.68341 -36.83123 -35.68089 -33.82095 -32.24695 -31.69987 -31.17426 -29.62187 -28.46305 -27.63859 -25.96905 -24.44972 -23.79895 -23.00282 -22.58904 -21.14124 -19.31814 -19.09724 -18.71278 -17.87125 -17.32036 -17.03249 -16.79158 -16.57564 -15.95185 -15.86971 -15.52834 -15.24052 -14.86271 -14.76851 -14.57080 -14.37953 -14.00997 -13.92721 -13.78476 -13.56884 -13.38568 -13.25921 -13.23563 -13.20290 -12.98130 -12.82130 -12.75315 -12.63555 -12.47556 -12.37161 -12.27143 -11.87864 -11.72204 -11.36282 -11.23815 -11.06836 -10.22909 -9.89575 -9.68850 -9.51520 -9.30086 -8.72004 -6.41579 0.63100 1.15030 1.38686 1.40728 1.46782 1.52579 1.69376 1.81977 2.05958 2.19259 2.70836 3.23914 3.60472 3.67451 3.78113 3.86396 4.05211 4.10599 4.12468 4.25398 4.32613 4.38488 4.42857 4.48709 4.60173 4.61759 4.66982 4.70083 4.77009 4.79422 4.85756 4.95239 5.00512 5.07302 5.09633 5.12863 5.21998 5.24238 5.30326 5.38100 5.51647 5.63519 5.79979 6.00510 6.05075 6.23944 6.26462 6.41390 6.61036 6.84660 6.93797 6.94444 7.26606 8.23722 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.017823 B = 0.003273 C = 0.003020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.652026 B = 8552.835434 C = 9268.377625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.100 3.900 3 N -0.597 5.597 4 C 0.097 3.903 5 C 0.083 3.917 6 N -0.607 5.607 7 C 0.586 3.414 8 O -0.576 6.576 9 C -0.269 4.269 10 C -0.059 4.059 11 C -0.190 4.190 12 C 0.101 3.899 13 C -0.483 4.483 14 H 0.087 0.913 15 C 0.040 3.960 16 N -0.809 5.809 17 Si 0.980 3.020 18 H -0.263 1.263 19 H -0.270 1.270 20 H -0.254 1.254 21 C -0.234 4.234 22 C -0.042 4.042 23 C 0.156 3.844 24 C -0.117 4.117 25 C -0.140 4.140 26 C 0.517 3.483 27 O -0.571 6.571 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.028 0.972 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.059 0.941 34 H 0.130 0.870 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.292 0.708 40 H 0.115 0.885 41 H 0.129 0.871 42 H 0.084 0.916 43 H 0.062 0.938 44 H 0.033 0.967 45 H 0.078 0.922 46 H 0.079 0.921 47 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.396 -12.353 -2.973 13.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.022 4.022 3 N -0.328 5.328 4 C -0.026 4.026 5 C -0.039 4.039 6 N -0.341 5.341 7 C 0.379 3.621 8 O -0.457 6.457 9 C -0.273 4.273 10 C -0.078 4.078 11 C -0.209 4.209 12 C 0.099 3.901 13 C -0.511 4.511 14 H 0.105 0.895 15 C -0.178 4.178 16 N -0.433 5.433 17 Si 0.800 3.200 18 H -0.187 1.187 19 H -0.194 1.194 20 H -0.178 1.178 21 C -0.253 4.253 22 C -0.061 4.061 23 C 0.068 3.932 24 C -0.175 4.175 25 C -0.198 4.198 26 C 0.304 3.696 27 O -0.451 6.451 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.048 0.952 31 H 0.132 0.868 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.148 0.852 35 H 0.134 0.866 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.133 0.867 41 H 0.146 0.854 42 H 0.102 0.898 43 H 0.080 0.920 44 H 0.052 0.948 45 H 0.097 0.903 46 H 0.098 0.902 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.821 -12.401 -3.909 13.867 hybrid contribution -0.787 0.771 0.570 1.240 sum 4.034 -11.629 -3.340 12.754 Atomic orbital electron populations 1.22056 0.95970 1.03099 1.00958 1.21740 0.94659 0.81335 1.04451 1.47450 1.64087 1.15464 1.05783 1.22005 1.00147 0.96164 0.84265 1.22513 0.98901 0.92139 0.90334 1.48352 1.67592 1.10482 1.07705 1.18599 0.74110 0.80618 0.88785 1.90683 1.50261 1.63833 1.40914 1.18976 0.97045 1.15233 0.96085 1.20356 0.95859 0.96497 0.95110 1.20813 0.99784 1.06343 0.93991 1.18040 0.91699 0.87821 0.92589 1.20012 0.96048 1.34135 1.00929 0.89495 1.26813 0.94159 0.95378 1.01473 1.69763 1.04020 1.31344 1.38162 0.85273 0.78734 0.78747 0.77222 1.18731 1.19430 1.17812 1.20925 0.99083 1.07179 0.98111 1.20512 0.95612 0.97122 0.92823 1.20779 0.98681 0.88902 0.84807 1.21955 0.98780 0.99678 0.97042 1.22030 0.91830 1.03692 1.02295 1.20253 0.77858 0.88011 0.83456 1.90663 1.53144 1.64529 1.36762 0.92552 0.89390 0.95226 0.86813 0.90590 0.92298 0.85214 0.86646 0.87627 0.89642 0.88388 0.89697 0.86745 0.85354 0.89778 0.91959 0.94791 0.90277 0.90170 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 10.23 71.98 0.74 -2.47 16 2 C 0.10 1.86 5.89 86.38 0.51 2.37 16 3 N -0.60 -13.96 2.81 -826.42 -2.32 -16.28 16 4 C 0.10 1.96 6.57 86.54 0.57 2.53 16 5 C 0.08 1.91 5.73 86.23 0.49 2.40 16 6 N -0.61 -18.51 2.62 -779.73 -2.04 -20.55 16 7 C 0.59 22.77 6.95 86.73 0.60 23.38 16 8 O -0.58 -25.59 13.09 -3.97 -0.05 -25.64 16 9 C -0.27 -11.15 4.87 -19.93 -0.10 -11.24 16 10 C -0.06 -2.75 9.69 22.25 0.22 -2.53 16 11 C -0.19 -9.49 8.61 22.47 0.19 -9.30 16 12 C 0.10 4.95 5.55 -21.28 -0.12 4.84 16 13 C -0.48 -23.46 9.04 23.46 0.21 -23.25 16 14 H 0.09 3.99 7.90 -2.91 -0.02 3.97 16 15 C 0.04 1.82 5.14 85.35 0.44 2.26 16 16 N -0.81 -38.93 11.06 21.87 0.24 -38.69 16 17 Si 0.98 34.78 29.59 68.60 2.03 36.81 16 18 H -0.26 -9.32 7.11 99.48 0.71 -8.62 16 19 H -0.27 -9.18 7.11 99.48 0.71 -8.48 16 20 H -0.25 -8.60 7.11 99.48 0.71 -7.89 16 21 C -0.23 -9.85 9.73 22.47 0.22 -9.63 16 22 C -0.04 -1.58 7.41 22.25 0.16 -1.42 16 23 C 0.16 4.59 0.98 2.66 0.00 4.59 16 24 C -0.12 -3.95 6.90 71.98 0.50 -3.45 16 25 C -0.14 -3.28 8.65 71.98 0.62 -2.66 16 26 C 0.52 15.14 6.33 87.78 0.56 15.70 16 27 O -0.57 -19.50 15.47 -3.05 -0.05 -19.54 16 28 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.11 1.31 7.81 -2.39 -0.02 1.29 16 32 H 0.08 1.59 7.22 -2.39 -0.02 1.57 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.13 1.58 7.85 -2.38 -0.02 1.56 16 35 H 0.12 2.99 4.81 -2.38 -0.01 2.97 16 36 H 0.11 1.79 7.52 -2.38 -0.02 1.77 16 37 H 0.09 3.97 8.06 -2.91 -0.02 3.94 16 38 H 0.10 5.19 6.31 -2.91 -0.02 5.17 16 39 H 0.29 12.76 8.29 -92.71 -0.77 11.99 16 40 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 41 H 0.13 3.87 7.61 -2.91 -0.02 3.85 16 42 H 0.08 3.00 6.38 -2.39 -0.02 2.98 16 43 H 0.06 1.98 7.60 -2.39 -0.02 1.96 16 44 H 0.03 1.29 7.33 -2.39 -0.02 1.27 16 45 H 0.08 1.52 7.51 -2.39 -0.02 1.50 16 46 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 47 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -63.23 373.34 4.60 -58.63 By element: Atomic # 1 Polarization: 32.19 SS G_CDS: 0.97 Total: 33.16 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 5.82 Total: -7.89 kcal Atomic # 7 Polarization: -71.40 SS G_CDS: -4.12 Total: -75.52 kcal Atomic # 8 Polarization: -45.08 SS G_CDS: -0.10 Total: -45.18 kcal Atomic # 14 Polarization: 34.78 SS G_CDS: 2.03 Total: 36.81 kcal Total: -63.23 4.60 -58.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275404674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.809 kcal (2) G-P(sol) polarization free energy of solvation -63.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds