Wall clock time and date at job start Tue Mar 31 2020 17:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47489 * 2 1 4 4 C 1.46499 * 119.99937 * 270.00653 * 3 2 1 5 5 C 1.50707 * 109.46791 * 269.99396 * 4 3 2 6 6 H 1.08000 * 120.00152 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00032 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99898 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99915 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47183 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47107 * 120.00283 * 9 7 5 12 12 H 1.48501 * 109.46880 * 239.99783 * 9 7 5 13 13 C 1.34779 * 119.99932 * 89.99956 * 3 2 1 14 14 O 1.21283 * 119.99763 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99926 * 0.02562 * 13 3 2 16 16 C 1.50699 * 109.47186 * 179.97438 * 15 13 3 17 17 C 1.38296 * 119.96547 * 269.98179 * 16 15 13 18 18 C 1.38261 * 120.14687 * 180.02562 * 17 16 15 19 19 C 1.38138 * 120.06346 * 359.71873 * 18 17 16 20 20 C 1.38850 * 119.92911 * 0.55446 * 19 18 17 21 21 N 1.39929 * 120.06947 * 179.72248 * 20 19 18 22 22 C 1.46766 * 124.35047 * 174.00656 * 21 20 19 23 23 C 1.54474 * 105.47319 * 162.98393 * 22 21 20 24 24 C 1.54623 * 101.76574 * 25.41620 * 23 22 21 25 25 C 1.34415 * 124.34858 * 354.00420 * 21 20 19 26 26 O 1.21290 * 124.94582 * 0.67814 * 25 21 20 27 27 C 1.38088 * 119.96587 * 89.99621 * 16 15 13 28 28 H 1.09008 * 109.47087 * 299.99792 * 1 2 3 29 29 H 1.08999 * 109.46983 * 59.99669 * 1 2 3 30 30 H 1.08997 * 109.47622 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46962 * 239.99684 * 2 1 3 32 32 H 1.08999 * 109.46983 * 120.00331 * 2 1 3 33 33 H 1.08997 * 109.47428 * 29.99155 * 4 3 2 34 34 H 1.08996 * 109.47539 * 150.00014 * 4 3 2 35 35 H 0.97003 * 119.99944 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.47203 * 59.99404 * 15 13 3 37 37 H 1.09007 * 109.47089 * 299.99961 * 15 13 3 38 38 H 1.08003 * 119.93285 * 359.97438 * 17 16 15 39 39 H 1.07999 * 119.97111 * 180.02562 * 18 17 16 40 40 H 1.08005 * 120.03260 * 180.27470 * 19 18 17 41 41 H 1.09006 * 110.24238 * 43.97955 * 22 21 20 42 42 H 1.08999 * 110.24052 * 281.98638 * 22 21 20 43 43 H 1.09004 * 110.97045 * 267.29833 * 23 22 21 44 44 H 1.08998 * 111.00023 * 143.55353 * 23 22 21 45 45 H 1.09004 * 110.48656 * 216.52391 * 24 23 22 46 46 H 1.09001 * 110.48997 * 93.88332 * 24 23 22 47 47 H 1.08006 * 120.03299 * 0.02562 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0962 7 6 4.1491 2.3896 -2.8780 8 7 3.3490 3.1256 -3.6181 9 14 5.9131 2.0954 -3.4176 10 1 6.6008 1.2405 -2.4170 11 1 5.9201 1.4162 -4.7381 12 1 6.6209 3.3964 -3.5264 13 6 2.2431 2.0165 1.1672 14 8 2.6470 3.1601 1.1672 15 6 1.9924 1.3059 2.4723 16 6 2.3193 2.2290 3.6178 17 6 3.5986 2.2523 4.1425 18 6 3.9026 3.0974 5.1938 19 6 2.9299 3.9255 5.7195 20 6 1.6431 3.9003 5.1986 21 7 0.6541 4.7337 5.7327 22 6 -0.6970 4.8766 5.1776 23 6 -1.5379 5.5225 6.3009 24 6 -0.4553 6.2646 7.1183 25 6 0.8194 5.5063 6.8202 26 8 1.8431 5.5877 7.4655 27 6 1.3411 3.0503 4.1425 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 3.6751 3.5161 -4.4440 36 1 2.6228 0.4185 2.5298 37 1 0.9444 1.0114 2.5302 38 1 4.3619 1.6085 3.7309 39 1 4.9027 3.1136 5.6012 40 1 3.1691 4.5886 6.5378 41 1 -1.1029 3.8991 4.9169 42 1 -0.6779 5.5239 4.3008 43 1 -2.0304 4.7615 6.9062 44 1 -2.2655 6.2228 5.8907 45 1 -0.6847 6.2214 8.1830 46 1 -0.3699 7.2996 6.7872 47 1 0.3421 3.0311 3.7327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278402341.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:31 Heat of formation + Delta-G solvation = -40.818616 kcal Electronic energy + Delta-G solvation = -28040.235415 eV Core-core repulsion = 24187.893616 eV Total energy + Delta-G solvation = -3852.341800 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.20168 -39.46031 -38.23896 -36.79686 -35.26361 -33.63686 -32.83451 -32.05217 -30.08856 -29.40670 -28.23045 -27.85606 -26.32452 -23.39844 -23.14338 -22.92779 -22.09636 -21.19453 -19.60020 -18.33504 -17.40966 -17.02125 -16.55083 -16.34732 -16.21416 -15.75600 -15.33597 -14.94304 -14.54287 -14.22884 -14.14197 -13.98825 -13.79506 -13.63566 -13.38362 -13.10646 -13.02275 -12.85217 -12.53191 -12.32942 -12.01054 -11.92125 -11.78078 -11.52979 -11.49575 -11.44847 -11.21193 -10.98597 -10.89031 -10.70217 -10.52283 -10.23041 -10.11725 -9.75967 -9.60477 -8.99667 -8.55144 -8.42965 -7.86461 -7.64318 -6.03764 -4.08143 1.34669 1.51844 2.43046 2.62333 3.30065 3.37578 3.40601 3.47204 3.81155 3.91339 4.03674 4.13674 4.39770 4.46102 4.60087 4.82973 4.95844 5.06038 5.13009 5.19185 5.24067 5.29232 5.31137 5.34377 5.37055 5.43963 5.51060 5.55051 5.57595 5.63103 5.70708 5.73137 5.79121 6.00999 6.07516 6.22511 6.27227 6.45860 6.49100 6.64120 6.78320 6.97694 7.07234 7.17382 7.45802 7.57045 7.84803 7.93217 8.24783 8.44504 8.91956 9.13013 9.57154 11.04338 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015076 B = 0.002803 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.789887 B = 9985.871805 C =10435.871770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.507 3.493 14 O -0.532 6.532 15 C -0.105 4.105 16 C -0.028 4.028 17 C -0.125 4.125 18 C -0.092 4.092 19 C -0.160 4.160 20 C 0.158 3.842 21 N -0.556 5.556 22 C 0.092 3.908 23 C -0.131 4.131 24 C -0.153 4.153 25 C 0.514 3.486 26 O -0.515 6.515 27 C -0.141 4.141 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.031 0.969 34 H 0.042 0.958 35 H 0.262 0.738 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.151 0.849 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.096 0.904 45 H 0.106 0.894 46 H 0.109 0.891 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.286 -1.881 19.314 22.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.409 6.409 15 C -0.145 4.145 16 C -0.029 4.029 17 C -0.144 4.144 18 C -0.110 4.110 19 C -0.180 4.180 20 C 0.066 3.934 21 N -0.280 5.280 22 C -0.030 4.030 23 C -0.168 4.168 24 C -0.193 4.193 25 C 0.303 3.697 26 O -0.391 6.391 27 C -0.161 4.161 28 H 0.069 0.931 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.100 0.900 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.113 0.887 38 H 0.140 0.860 39 H 0.143 0.857 40 H 0.168 0.832 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.104 0.896 44 H 0.114 0.886 45 H 0.124 0.876 46 H 0.127 0.873 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.546 -1.105 19.461 22.655 hybrid contribution 0.900 -0.220 -0.698 1.160 sum -10.646 -1.325 18.763 21.613 Atomic orbital electron populations 1.22223 0.96900 1.01371 1.02238 1.21415 0.93434 0.84316 1.02691 1.48263 1.63975 1.13218 1.07682 1.19249 0.96220 0.93600 0.78160 1.21479 0.96963 1.31711 1.06135 0.92452 1.24936 0.97825 0.94960 0.96436 1.69944 1.35575 1.33581 1.14352 0.86456 0.84704 0.78069 0.78281 1.19798 1.20986 1.20892 1.20138 0.78857 0.87024 0.84707 1.90702 1.45149 1.17949 1.87068 1.20807 1.03551 0.98392 0.91777 1.19113 0.93323 0.95953 0.94524 1.20995 0.95904 1.00522 0.97009 1.20967 0.98805 0.95232 0.96018 1.21514 0.91183 1.02121 1.03152 1.17643 0.88046 0.92405 0.95356 1.45756 1.13140 1.41180 1.27906 1.22292 0.80564 1.02718 0.97422 1.22619 0.97211 1.00411 0.96595 1.22345 0.92848 1.00875 1.03253 1.21066 0.90002 0.79316 0.79330 1.90629 1.31565 1.64654 1.52225 1.20493 1.00001 0.98089 0.97537 0.93141 0.92074 0.92192 0.89994 0.91696 0.95102 0.93997 0.92818 0.88392 0.88737 0.86026 0.85741 0.83206 0.89414 0.89811 0.89643 0.88556 0.87613 0.87319 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 10.24 37.16 0.38 -1.76 16 2 C 0.11 1.63 5.93 -4.04 -0.02 1.60 16 3 N -0.60 -12.39 2.46 -175.06 -0.43 -12.82 16 4 C 0.25 6.42 5.16 -5.19 -0.03 6.39 16 5 C -0.52 -14.88 9.39 -34.44 -0.32 -15.20 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 9 Si 0.90 22.02 29.54 -169.99 -5.02 17.00 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.51 10.38 7.67 -10.98 -0.08 10.30 16 14 O -0.53 -13.52 15.61 5.55 0.09 -13.43 16 15 C -0.11 -1.54 4.38 -29.04 -0.13 -1.67 16 16 C -0.03 -0.43 4.37 -104.66 -0.46 -0.89 16 17 C -0.13 -1.91 9.70 -39.55 -0.38 -2.30 16 18 C -0.09 -1.34 10.04 -39.61 -0.40 -1.74 16 19 C -0.16 -2.47 9.29 -39.39 -0.37 -2.83 16 20 C 0.16 2.32 6.60 -83.69 -0.55 1.77 16 21 N -0.56 -6.69 3.14 -112.27 -0.35 -7.05 16 22 C 0.09 0.73 6.51 -3.12 -0.02 0.71 16 23 C -0.13 -0.64 7.18 -25.10 -0.18 -0.82 16 24 C -0.15 -1.04 6.86 -26.74 -0.18 -1.23 16 25 C 0.51 6.18 7.92 -10.86 -0.09 6.10 16 26 O -0.51 -7.99 14.82 5.55 0.08 -7.91 16 27 C -0.14 -2.04 9.07 -39.40 -0.36 -2.40 16 28 H 0.05 0.59 7.22 -51.92 -0.38 0.22 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 32 H 0.06 0.81 6.44 -51.93 -0.33 0.48 16 33 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.04 1.24 7.42 -51.93 -0.39 0.85 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 36 H 0.10 1.24 7.34 -51.93 -0.38 0.86 16 37 H 0.09 1.12 7.13 -51.93 -0.37 0.75 16 38 H 0.12 1.71 8.06 -52.48 -0.42 1.29 16 39 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 40 H 0.15 2.40 5.26 -52.48 -0.28 2.13 16 41 H 0.09 0.60 7.24 -51.93 -0.38 0.22 16 42 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.12 1.51 6.75 -52.48 -0.35 1.15 16 LS Contribution 386.09 15.07 5.82 5.82 Total: -1.00 -36.86 386.09 -9.41 -46.27 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.04 Total: 0.43 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -3.29 Total: -2.33 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: -0.05 Total: -45.84 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: 0.17 Total: -21.34 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.86 -9.41 -46.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278402341.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.447 kcal (2) G-P(sol) polarization free energy of solvation -36.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds