Wall clock time and date at job start Tue Mar 31 2020 17:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47489 * 2 1 4 4 C 1.46499 * 119.99937 * 270.00653 * 3 2 1 5 5 C 1.50707 * 109.46791 * 269.99396 * 4 3 2 6 6 H 1.08000 * 120.00152 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00032 * 179.97438 * 5 4 3 8 8 N 1.31517 * 119.99898 * 0.02562 * 7 5 4 9 9 Si 1.86799 * 119.99915 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47183 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47107 * 120.00283 * 9 7 5 12 12 H 1.48501 * 109.46880 * 239.99783 * 9 7 5 13 13 C 1.34779 * 119.99932 * 89.99956 * 3 2 1 14 14 O 1.21283 * 119.99763 * 180.02562 * 13 3 2 15 15 C 1.50699 * 119.99926 * 0.02562 * 13 3 2 16 16 C 1.50699 * 109.47186 * 179.97438 * 15 13 3 17 17 C 1.38296 * 119.96547 * 269.98179 * 16 15 13 18 18 C 1.38261 * 120.14687 * 180.02562 * 17 16 15 19 19 C 1.38138 * 120.06346 * 359.71873 * 18 17 16 20 20 C 1.38850 * 119.92911 * 0.55446 * 19 18 17 21 21 N 1.39929 * 120.06947 * 179.72248 * 20 19 18 22 22 C 1.46766 * 124.35047 * 174.00656 * 21 20 19 23 23 C 1.54474 * 105.47319 * 162.98393 * 22 21 20 24 24 C 1.54623 * 101.76574 * 25.41620 * 23 22 21 25 25 C 1.34415 * 124.34858 * 354.00420 * 21 20 19 26 26 O 1.21290 * 124.94582 * 0.67814 * 25 21 20 27 27 C 1.38088 * 119.96587 * 89.99621 * 16 15 13 28 28 H 1.09008 * 109.47087 * 299.99792 * 1 2 3 29 29 H 1.08999 * 109.46983 * 59.99669 * 1 2 3 30 30 H 1.08997 * 109.47622 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46962 * 239.99684 * 2 1 3 32 32 H 1.08999 * 109.46983 * 120.00331 * 2 1 3 33 33 H 1.08997 * 109.47428 * 29.99155 * 4 3 2 34 34 H 1.08996 * 109.47539 * 150.00014 * 4 3 2 35 35 H 0.97003 * 119.99944 * 179.97438 * 8 7 5 36 36 H 1.09004 * 109.47203 * 59.99404 * 15 13 3 37 37 H 1.09007 * 109.47089 * 299.99961 * 15 13 3 38 38 H 1.08003 * 119.93285 * 359.97438 * 17 16 15 39 39 H 1.07999 * 119.97111 * 180.02562 * 18 17 16 40 40 H 1.08005 * 120.03260 * 180.27470 * 19 18 17 41 41 H 1.09006 * 110.24238 * 43.97955 * 22 21 20 42 42 H 1.08999 * 110.24052 * 281.98638 * 22 21 20 43 43 H 1.09004 * 110.97045 * 267.29833 * 23 22 21 44 44 H 1.08998 * 111.00023 * 143.55353 * 23 22 21 45 45 H 1.09004 * 110.48656 * 216.52391 * 24 23 22 46 46 H 1.09001 * 110.48997 * 93.88332 * 24 23 22 47 47 H 1.08006 * 120.03299 * 0.02562 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8350 -1.7038 6 1 4.3427 1.2302 -1.0962 7 6 4.1491 2.3896 -2.8780 8 7 3.3490 3.1256 -3.6181 9 14 5.9131 2.0954 -3.4176 10 1 6.6008 1.2405 -2.4170 11 1 5.9201 1.4162 -4.7381 12 1 6.6209 3.3964 -3.5264 13 6 2.2431 2.0165 1.1672 14 8 2.6470 3.1601 1.1672 15 6 1.9924 1.3059 2.4723 16 6 2.3193 2.2290 3.6178 17 6 3.5986 2.2523 4.1425 18 6 3.9026 3.0974 5.1938 19 6 2.9299 3.9255 5.7195 20 6 1.6431 3.9003 5.1986 21 7 0.6541 4.7337 5.7327 22 6 -0.6970 4.8766 5.1776 23 6 -1.5379 5.5225 6.3009 24 6 -0.4553 6.2646 7.1183 25 6 0.8194 5.5063 6.8202 26 8 1.8431 5.5877 7.4655 27 6 1.3411 3.0503 4.1425 28 1 -0.3634 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.5817 1.6877 -2.0284 34 1 2.0956 3.1410 -1.1384 35 1 3.6751 3.5161 -4.4440 36 1 2.6228 0.4185 2.5298 37 1 0.9444 1.0114 2.5302 38 1 4.3619 1.6085 3.7309 39 1 4.9027 3.1136 5.6012 40 1 3.1691 4.5886 6.5378 41 1 -1.1029 3.8991 4.9169 42 1 -0.6779 5.5239 4.3008 43 1 -2.0304 4.7615 6.9062 44 1 -2.2655 6.2228 5.8907 45 1 -0.6847 6.2214 8.1830 46 1 -0.3699 7.2996 6.7872 47 1 0.3421 3.0311 3.7327 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278402341.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:30 Heat of formation + Delta-G solvation = -63.493581 kcal Electronic energy + Delta-G solvation = -28041.218676 eV Core-core repulsion = 24187.893616 eV Total energy + Delta-G solvation = -3853.325060 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.09701 -40.89024 -39.48452 -37.69846 -36.89741 -34.99556 -34.46622 -33.21592 -31.56092 -30.43885 -29.57686 -28.70663 -27.92298 -24.97875 -24.28994 -24.15164 -23.22034 -22.07111 -20.67239 -19.75619 -18.61899 -18.42601 -17.85539 -17.79060 -17.35734 -17.12666 -16.70404 -16.20295 -16.08038 -15.46483 -15.31782 -14.83668 -14.74222 -14.64080 -14.54790 -14.41455 -14.33818 -14.03493 -13.65423 -13.54212 -13.34169 -13.26493 -13.09486 -12.85888 -12.68887 -12.66238 -12.48393 -12.33159 -12.15843 -12.05741 -11.99602 -11.80207 -11.67559 -11.15231 -10.73200 -10.64952 -10.61103 -9.76606 -9.39936 -8.92504 -8.22475 -6.36816 0.24368 0.35739 1.34914 1.37742 1.49053 1.50012 1.78352 1.89420 2.32007 2.45854 2.87773 3.07124 3.24955 3.51474 3.68411 3.89561 3.92425 3.95995 4.06872 4.14107 4.21547 4.33679 4.41086 4.45706 4.49852 4.55420 4.58183 4.63408 4.68771 4.75983 4.80250 4.93225 5.03139 5.04265 5.05695 5.09299 5.15492 5.19992 5.25015 5.42358 5.44539 5.52436 5.59589 5.63845 5.88991 6.06256 6.06701 6.07936 6.71702 6.85049 6.92930 7.29537 7.54439 8.84535 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.015076 B = 0.002803 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.789887 B = 9985.871805 C =10435.871770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.097 3.903 3 N -0.604 5.604 4 C 0.263 3.737 5 C -0.540 4.540 6 H 0.053 0.947 7 C 0.006 3.994 8 N -0.929 5.929 9 Si 0.965 3.035 10 H -0.266 1.266 11 H -0.268 1.268 12 H -0.284 1.284 13 C 0.499 3.501 14 O -0.593 6.593 15 C -0.088 4.088 16 C -0.043 4.043 17 C -0.142 4.142 18 C -0.097 4.097 19 C -0.181 4.181 20 C 0.149 3.851 21 N -0.562 5.562 22 C 0.080 3.920 23 C -0.114 4.114 24 C -0.144 4.144 25 C 0.497 3.503 26 O -0.561 6.561 27 C -0.145 4.145 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.021 0.979 34 H -0.006 1.006 35 H 0.266 0.734 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.130 0.870 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.101 0.899 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.125 0.875 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.803 -3.551 20.271 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.335 5.335 4 C 0.142 3.858 5 C -0.578 4.578 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.569 5.569 9 Si 0.790 3.210 10 H -0.191 1.191 11 H -0.193 1.193 12 H -0.210 1.210 13 C 0.288 3.712 14 O -0.474 6.474 15 C -0.127 4.127 16 C -0.044 4.044 17 C -0.161 4.161 18 C -0.115 4.115 19 C -0.201 4.201 20 C 0.056 3.944 21 N -0.285 5.285 22 C -0.041 4.041 23 C -0.151 4.151 24 C -0.184 4.184 25 C 0.289 3.711 26 O -0.440 6.440 27 C -0.166 4.166 28 H 0.083 0.917 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.039 0.961 34 H 0.012 0.988 35 H 0.075 0.925 36 H 0.144 0.856 37 H 0.150 0.850 38 H 0.148 0.852 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.119 0.881 42 H 0.100 0.900 43 H 0.119 0.881 44 H 0.143 0.857 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -13.123 -2.828 20.421 24.438 hybrid contribution 1.339 0.330 -0.986 1.695 sum -11.784 -2.499 19.435 22.866 Atomic orbital electron populations 1.22160 0.94477 1.03525 1.01770 1.21784 0.95418 0.81255 1.04027 1.48286 1.64003 1.15148 1.06054 1.18659 0.95125 0.91422 0.80607 1.21760 0.98002 1.31718 1.06347 0.92887 1.25848 1.02271 0.94573 0.96538 1.70058 1.37636 1.34367 1.14841 0.85398 0.79193 0.77941 0.78466 1.19062 1.19326 1.21001 1.21157 0.77252 0.86505 0.86237 1.90672 1.47818 1.20841 1.88060 1.20774 1.06406 0.98128 0.87409 1.19335 0.93637 0.96561 0.94837 1.21211 0.96386 1.01082 0.97398 1.21197 0.99540 0.94839 0.95918 1.21604 0.92297 1.02700 1.03532 1.17862 0.88544 0.92721 0.95318 1.46090 1.14093 1.40400 1.27951 1.22645 0.79011 1.03887 0.98528 1.22673 0.96448 1.00856 0.95143 1.22424 0.90372 1.00864 1.04718 1.22140 0.91111 0.79171 0.78715 1.90593 1.33740 1.66067 1.53619 1.20726 1.00872 0.97649 0.97322 0.91695 0.94506 0.88648 0.91231 0.87799 0.96064 0.98807 0.92485 0.85639 0.85031 0.85194 0.84080 0.84371 0.88094 0.89961 0.88104 0.85703 0.85965 0.85948 0.84111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.62 10.24 71.98 0.74 -2.88 16 2 C 0.10 2.78 5.93 86.38 0.51 3.29 16 3 N -0.60 -24.91 2.46 -826.15 -2.03 -26.94 16 4 C 0.26 14.23 5.16 85.64 0.44 14.67 16 5 C -0.54 -31.34 9.39 25.60 0.24 -31.10 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.37 5.46 84.65 0.46 0.84 16 8 N -0.93 -56.75 13.29 21.45 0.28 -56.46 16 9 Si 0.97 45.49 29.54 68.60 2.03 47.51 16 10 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 11 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 12 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 13 C 0.50 20.30 7.67 87.66 0.67 20.98 16 14 O -0.59 -31.10 15.61 -3.04 -0.05 -31.15 16 15 C -0.09 -2.35 4.38 29.10 0.13 -2.22 16 16 C -0.04 -1.27 4.37 -19.89 -0.09 -1.36 16 17 C -0.14 -4.29 9.70 22.29 0.22 -4.08 16 18 C -0.10 -2.88 10.04 22.25 0.22 -2.66 16 19 C -0.18 -5.81 9.29 22.39 0.21 -5.60 16 20 C 0.15 4.42 6.60 38.15 0.25 4.67 16 21 N -0.56 -13.28 3.14 -627.69 -1.97 -15.25 16 22 C 0.08 1.10 6.51 86.83 0.57 1.67 16 23 C -0.11 -0.73 7.18 31.65 0.23 -0.51 16 24 C -0.14 -1.65 6.86 30.59 0.21 -1.44 16 25 C 0.50 11.91 7.92 87.90 0.70 12.61 16 26 O -0.56 -18.15 14.82 -3.06 -0.05 -18.20 16 27 C -0.15 -4.09 9.07 22.39 0.20 -3.89 16 28 H 0.06 1.27 7.22 -2.38 -0.02 1.26 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.07 2.16 8.07 -2.38 -0.02 2.15 16 32 H 0.10 2.18 6.44 -2.39 -0.02 2.16 16 33 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 34 H -0.01 -0.39 7.42 -2.39 -0.02 -0.41 16 35 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 36 H 0.13 2.70 7.34 -2.39 -0.02 2.68 16 37 H 0.13 2.55 7.13 -2.38 -0.02 2.53 16 38 H 0.13 3.58 8.06 -2.91 -0.02 3.56 16 39 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 40 H 0.14 4.74 5.26 -2.91 -0.02 4.72 16 41 H 0.10 1.11 7.24 -2.38 -0.02 1.09 16 42 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 44 H 0.12 0.17 8.14 -2.39 -0.02 0.16 16 45 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 47 H 0.14 3.24 6.75 -2.91 -0.02 3.22 16 Total: -1.00 -86.57 386.09 5.10 -81.48 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.97 Total: 16.03 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 5.91 Total: 2.99 kcal Atomic # 7 Polarization: -94.95 SS G_CDS: -3.71 Total: -98.66 kcal Atomic # 8 Polarization: -49.25 SS G_CDS: -0.09 Total: -49.35 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -86.57 5.10 -81.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278402341.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.983 kcal (2) G-P(sol) polarization free energy of solvation -86.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds