Wall clock time and date at job start Tue Mar 31 2020 16:23:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47213 * 2 1 4 4 N 1.46501 * 109.47044 * 239.99965 * 2 1 3 5 5 C 1.34784 * 119.99866 * 84.99503 * 4 2 1 6 6 O 1.21282 * 119.99995 * 0.02562 * 5 4 2 7 7 C 1.50698 * 119.99940 * 179.97438 * 5 4 2 8 8 C 1.55240 * 110.58481 * 294.88156 * 7 5 4 9 9 C 1.54886 * 102.58632 * 203.33963 * 8 7 5 10 10 C 1.54264 * 104.31451 * 37.92873 * 9 8 7 11 11 C 1.53870 * 106.60059 * 336.32521 * 10 9 8 12 12 C 1.50693 * 109.47222 * 120.00156 * 2 1 3 13 13 O 1.21285 * 120.00253 * 23.34139 * 12 2 1 14 14 N 1.34784 * 119.99934 * 203.34052 * 12 2 1 15 15 C 1.37142 * 119.99684 * 179.44607 * 14 12 2 16 16 H 1.08001 * 119.99549 * 129.11307 * 15 14 12 17 17 C 1.38890 * 120.00162 * 309.10974 * 15 14 12 18 18 N 1.31418 * 119.99986 * 344.25626 * 17 15 14 19 19 Si 1.86804 * 119.99970 * 164.25461 * 17 15 14 20 20 H 1.48495 * 109.46904 * 89.99833 * 19 17 15 21 21 H 1.48501 * 109.46729 * 209.99937 * 19 17 15 22 22 H 1.48497 * 109.46800 * 329.99840 * 19 17 15 23 23 C 1.39783 * 119.99925 * 359.44611 * 14 12 2 24 24 C 1.38957 * 120.07603 * 114.38848 * 23 14 12 25 25 C 1.38090 * 119.92032 * 179.74483 * 24 23 14 26 26 C 1.38312 * 120.07715 * 0.52586 * 25 24 23 27 27 C 1.38307 * 120.15206 * 359.72643 * 26 25 24 28 28 C 1.38080 * 120.08329 * 0.02562 * 27 26 25 29 29 H 1.08995 * 109.47203 * 174.76194 * 1 2 3 30 30 H 1.08999 * 109.46741 * 294.76195 * 1 2 3 31 31 H 1.08994 * 109.47361 * 54.75680 * 1 2 3 32 32 H 0.96990 * 120.00217 * 265.00523 * 4 2 1 33 33 H 1.09005 * 110.43411 * 57.46702 * 7 5 4 34 34 H 1.08993 * 110.89695 * 85.04449 * 8 7 5 35 35 H 1.09003 * 110.75803 * 321.56824 * 8 7 5 36 36 H 1.09004 * 110.48561 * 279.18002 * 9 8 7 37 37 H 1.09005 * 110.48452 * 156.67705 * 9 8 7 38 38 H 1.09002 * 110.03257 * 95.61143 * 10 9 8 39 39 H 1.09001 * 110.03185 * 216.99010 * 10 9 8 40 40 H 1.08996 * 110.03198 * 119.28546 * 11 10 9 41 41 H 1.09007 * 110.03016 * 240.66731 * 11 10 9 42 42 H 0.97005 * 120.00152 * 185.04361 * 18 17 15 43 43 H 1.07998 * 120.04098 * 359.97438 * 24 23 14 44 44 H 1.08001 * 119.96035 * 180.25433 * 25 24 23 45 45 H 1.07994 * 119.91994 * 179.70284 * 26 25 24 46 46 H 1.08004 * 119.95779 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.04322 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0182 -2.3572 6 8 1.8588 1.1586 -2.4116 7 6 2.6498 -0.7285 -3.5875 8 6 4.1204 -1.1853 -3.3913 9 6 4.6329 -1.3083 -4.8477 10 6 3.9717 -0.1259 -5.5858 11 6 2.7109 0.2427 -4.7845 12 6 2.0323 -0.7104 1.2304 13 8 1.3253 -1.5174 1.7959 14 7 3.2674 -0.4490 1.7025 15 6 3.7203 -1.0871 2.8287 16 1 4.6805 -1.5814 2.8201 17 6 2.9441 -1.0976 3.9805 18 7 1.9411 -0.2575 4.1047 19 14 3.3258 -2.3060 5.3530 20 1 4.2851 -1.6884 6.3035 21 1 2.0723 -2.6528 6.0698 22 1 3.9232 -3.5372 4.7765 23 6 4.0867 0.4726 1.0441 24 6 4.4447 1.6593 1.6721 25 6 5.2585 2.5650 1.0207 26 6 5.7083 2.2971 -0.2594 27 6 5.3497 1.1192 -0.8895 28 6 4.5404 0.2067 -0.2422 29 1 -0.3633 -1.0233 -0.0938 30 1 -0.3633 0.4304 0.9332 31 1 -0.3634 0.5930 -0.8392 32 1 2.2489 -1.6317 -1.1527 33 1 2.0134 -1.5821 -3.8210 34 1 4.1637 -2.1490 -2.8838 35 1 4.6888 -0.4334 -2.8439 36 1 4.3168 -2.2556 -5.2847 37 1 5.7187 -1.2184 -4.8789 38 1 4.6548 0.7228 -5.6184 39 1 3.6980 -0.4237 -6.5980 40 1 2.7821 1.2704 -4.4283 41 1 1.8245 0.1244 -5.4079 42 1 1.4450 -0.2142 4.9371 43 1 4.0899 1.8714 2.6698 44 1 5.5405 3.4857 1.5098 45 1 6.3407 3.0094 -0.7683 46 1 5.7024 0.9133 -1.8893 47 1 4.2604 -0.7126 -0.7350 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282234078.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:23 Heat of formation + Delta-G solvation = -44.584979 kcal Electronic energy + Delta-G solvation = -30122.466531 eV Core-core repulsion = 26269.961410 eV Total energy + Delta-G solvation = -3852.505121 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.28289 -39.15753 -37.76311 -36.96857 -34.77642 -34.13742 -32.01567 -30.67434 -30.28472 -28.78886 -28.62810 -28.51234 -25.58955 -23.57422 -22.04707 -21.81553 -21.49190 -20.47228 -19.65031 -19.13435 -17.74259 -17.39677 -16.41925 -15.71473 -15.65710 -15.49620 -15.11246 -14.84206 -14.29208 -14.10477 -13.98639 -13.77241 -13.51159 -13.32307 -12.79248 -12.74028 -12.57290 -12.22124 -11.98033 -11.87572 -11.69141 -11.39375 -11.33895 -11.23367 -11.18625 -11.09715 -10.95981 -10.93196 -10.77870 -10.65915 -10.48816 -10.46245 -10.32647 -9.48356 -8.97093 -8.79715 -8.52468 -8.30887 -8.20080 -7.19013 -6.32391 -4.14293 1.96590 2.03015 2.92181 3.16954 3.24584 3.29410 3.32121 4.02763 4.28608 4.41559 4.43823 4.53695 4.71321 4.74186 5.11070 5.15929 5.27457 5.32169 5.40794 5.45801 5.50101 5.50496 5.54805 5.58853 5.68599 5.75026 5.77980 5.83715 5.91236 5.98058 6.04246 6.12106 6.18911 6.20976 6.25708 6.33185 6.38248 6.52822 6.65368 6.71203 6.84279 6.97717 7.10600 7.31238 7.45318 7.57601 7.79749 8.19077 8.52115 8.82416 8.90512 9.39413 9.96930 10.76926 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.004549 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.171113 B = 6153.660077 C = 6833.734594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.129 3.871 3 H 0.094 0.906 4 N -0.710 5.710 5 C 0.522 3.478 6 O -0.538 6.538 7 C -0.114 4.114 8 C -0.122 4.122 9 C -0.122 4.122 10 C -0.124 4.124 11 C -0.111 4.111 12 C 0.488 3.512 13 O -0.517 6.517 14 N -0.409 5.409 15 C -0.351 4.351 16 H 0.082 0.918 17 C 0.076 3.924 18 N -0.839 5.839 19 Si 0.919 3.081 20 H -0.279 1.279 21 H -0.282 1.282 22 H -0.269 1.269 23 C 0.162 3.838 24 C -0.117 4.117 25 C -0.114 4.114 26 C -0.147 4.147 27 C -0.111 4.111 28 C -0.142 4.142 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.399 0.601 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.064 0.936 42 H 0.269 0.731 43 H 0.126 0.874 44 H 0.114 0.886 45 H 0.110 0.890 46 H 0.111 0.889 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.826 0.521 -14.821 15.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.021 3.979 3 H 0.112 0.888 4 N -0.363 5.363 5 C 0.308 3.692 6 O -0.414 6.414 7 C -0.135 4.135 8 C -0.160 4.160 9 C -0.160 4.160 10 C -0.161 4.161 11 C -0.149 4.149 12 C 0.275 3.725 13 O -0.393 6.393 14 N -0.126 5.126 15 C -0.477 4.477 16 H 0.100 0.900 17 C -0.135 4.135 18 N -0.471 5.471 19 Si 0.746 3.254 20 H -0.205 1.205 21 H -0.208 1.208 22 H -0.193 1.193 23 C 0.069 3.931 24 C -0.137 4.137 25 C -0.133 4.133 26 C -0.166 4.166 27 C -0.130 4.130 28 C -0.162 4.162 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.234 0.766 33 H 0.115 0.885 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.144 0.856 44 H 0.132 0.868 45 H 0.129 0.871 46 H 0.129 0.871 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.975 0.926 -14.390 14.958 hybrid contribution 0.234 -0.842 0.895 1.251 sum 4.209 0.084 -13.495 14.136 Atomic orbital electron populations 1.21855 0.93797 1.02295 1.01963 1.21060 0.95270 0.98102 0.83480 0.88753 1.46003 1.67109 1.13915 1.09240 1.20442 0.77207 0.87285 0.84243 1.90665 1.50050 1.15933 1.84780 1.22223 0.98181 0.99446 0.93679 1.22721 0.93735 1.01947 0.97588 1.22337 1.00178 0.98506 0.94955 1.22142 0.96991 0.98249 0.98762 1.22054 0.97682 1.00546 0.94621 1.20131 0.83573 0.83905 0.84932 1.90541 1.54753 1.34748 1.59214 1.41015 1.12173 1.34911 1.24520 1.19036 1.06194 1.33584 0.88860 0.90037 1.25408 0.94770 0.95298 0.98032 1.69796 1.18747 1.32525 1.25993 0.86091 0.77752 0.81190 0.80413 1.20538 1.20757 1.19313 1.18278 0.94357 0.89347 0.91081 1.21404 0.98592 0.92641 1.01048 1.20956 0.98187 0.99088 0.95075 1.20892 1.02376 0.97672 0.95640 1.20799 0.98635 0.94601 0.98968 1.21332 0.99287 0.99962 0.95602 0.92013 0.91274 0.92715 0.76635 0.88489 0.90791 0.90080 0.91559 0.91458 0.91739 0.91969 0.89644 0.91768 0.92099 0.85574 0.86819 0.87143 0.87094 0.86578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 8.90 37.16 0.33 -2.35 16 2 C 0.13 2.59 1.95 -69.08 -0.13 2.45 16 3 H 0.09 2.07 6.64 -51.93 -0.34 1.72 16 4 N -0.71 -11.57 2.94 -54.93 -0.16 -11.73 16 5 C 0.52 8.06 6.35 -10.98 -0.07 7.99 16 6 O -0.54 -10.13 15.09 5.56 0.08 -10.05 16 7 C -0.11 -1.31 3.25 -89.92 -0.29 -1.60 16 8 C -0.12 -1.25 5.72 -24.55 -0.14 -1.39 16 9 C -0.12 -1.03 6.82 -25.07 -0.17 -1.21 16 10 C -0.12 -1.10 6.80 -25.62 -0.17 -1.27 16 11 C -0.11 -1.22 6.18 -25.62 -0.16 -1.38 16 12 C 0.49 11.80 6.17 -10.99 -0.07 11.74 16 13 O -0.52 -14.28 14.52 5.55 0.08 -14.20 16 14 N -0.41 -9.98 2.51 -58.98 -0.15 -10.13 16 15 C -0.35 -9.34 8.88 -14.93 -0.13 -9.47 16 16 H 0.08 2.13 7.88 -52.49 -0.41 1.72 16 17 C 0.08 2.05 4.50 -17.49 -0.08 1.97 16 18 N -0.84 -23.66 12.21 55.49 0.68 -22.98 16 19 Si 0.92 21.08 29.58 -169.99 -5.03 16.05 16 20 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 C 0.16 3.47 4.09 -83.70 -0.34 3.13 16 24 C -0.12 -2.41 9.78 -39.37 -0.38 -2.79 16 25 C -0.11 -1.95 10.04 -39.61 -0.40 -2.35 16 26 C -0.15 -2.31 10.04 -39.53 -0.40 -2.70 16 27 C -0.11 -1.77 9.56 -39.61 -0.38 -2.15 16 28 C -0.14 -2.57 7.28 -39.37 -0.29 -2.85 16 29 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 30 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.40 5.93 8.49 -40.82 -0.35 5.58 16 33 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.08 0.93 5.09 -51.93 -0.26 0.67 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 1.13 6.85 -51.93 -0.36 0.78 16 41 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 42 H 0.27 7.25 8.32 -40.82 -0.34 6.91 16 43 H 0.13 2.81 8.06 -52.49 -0.42 2.39 16 44 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 45 H 0.11 1.42 8.06 -52.49 -0.42 0.99 16 46 H 0.11 1.47 6.67 -52.48 -0.35 1.12 16 47 H 0.12 1.96 5.35 -52.49 -0.28 1.68 16 LS Contribution 375.25 15.07 5.66 5.66 Total: -1.00 -31.67 375.25 -9.10 -40.77 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -6.98 Total: 10.84 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -3.28 Total: -4.23 kcal Atomic # 7 Polarization: -45.21 SS G_CDS: 0.37 Total: -44.85 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: 0.16 Total: -24.25 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.05 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.67 -9.10 -40.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282234078.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.811 kcal (2) G-P(sol) polarization free energy of solvation -31.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds