Wall clock time and date at job start Tue Mar 31 2020 16:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47213 * 2 1 4 4 N 1.46501 * 109.47044 * 239.99965 * 2 1 3 5 5 C 1.34784 * 119.99866 * 84.99503 * 4 2 1 6 6 O 1.21282 * 119.99995 * 0.02562 * 5 4 2 7 7 C 1.50698 * 119.99940 * 179.97438 * 5 4 2 8 8 C 1.55240 * 110.58481 * 294.88156 * 7 5 4 9 9 C 1.54886 * 102.58632 * 203.33963 * 8 7 5 10 10 C 1.54264 * 104.31451 * 37.92873 * 9 8 7 11 11 C 1.53870 * 106.60059 * 336.32521 * 10 9 8 12 12 C 1.50693 * 109.47222 * 120.00156 * 2 1 3 13 13 O 1.21285 * 120.00253 * 23.34139 * 12 2 1 14 14 N 1.34784 * 119.99934 * 203.34052 * 12 2 1 15 15 C 1.37142 * 119.99684 * 179.44607 * 14 12 2 16 16 H 1.08001 * 119.99549 * 129.11307 * 15 14 12 17 17 C 1.38890 * 120.00162 * 309.10974 * 15 14 12 18 18 N 1.31418 * 119.99986 * 344.25626 * 17 15 14 19 19 Si 1.86804 * 119.99970 * 164.25461 * 17 15 14 20 20 H 1.48495 * 109.46904 * 89.99833 * 19 17 15 21 21 H 1.48501 * 109.46729 * 209.99937 * 19 17 15 22 22 H 1.48497 * 109.46800 * 329.99840 * 19 17 15 23 23 C 1.39783 * 119.99925 * 359.44611 * 14 12 2 24 24 C 1.38957 * 120.07603 * 114.38848 * 23 14 12 25 25 C 1.38090 * 119.92032 * 179.74483 * 24 23 14 26 26 C 1.38312 * 120.07715 * 0.52586 * 25 24 23 27 27 C 1.38307 * 120.15206 * 359.72643 * 26 25 24 28 28 C 1.38080 * 120.08329 * 0.02562 * 27 26 25 29 29 H 1.08995 * 109.47203 * 174.76194 * 1 2 3 30 30 H 1.08999 * 109.46741 * 294.76195 * 1 2 3 31 31 H 1.08994 * 109.47361 * 54.75680 * 1 2 3 32 32 H 0.96990 * 120.00217 * 265.00523 * 4 2 1 33 33 H 1.09005 * 110.43411 * 57.46702 * 7 5 4 34 34 H 1.08993 * 110.89695 * 85.04449 * 8 7 5 35 35 H 1.09003 * 110.75803 * 321.56824 * 8 7 5 36 36 H 1.09004 * 110.48561 * 279.18002 * 9 8 7 37 37 H 1.09005 * 110.48452 * 156.67705 * 9 8 7 38 38 H 1.09002 * 110.03257 * 95.61143 * 10 9 8 39 39 H 1.09001 * 110.03185 * 216.99010 * 10 9 8 40 40 H 1.08996 * 110.03198 * 119.28546 * 11 10 9 41 41 H 1.09007 * 110.03016 * 240.66731 * 11 10 9 42 42 H 0.97005 * 120.00152 * 185.04361 * 18 17 15 43 43 H 1.07998 * 120.04098 * 359.97438 * 24 23 14 44 44 H 1.08001 * 119.96035 * 180.25433 * 25 24 23 45 45 H 1.07994 * 119.91994 * 179.70284 * 26 25 24 46 46 H 1.08004 * 119.95779 * 179.97438 * 27 26 25 47 47 H 1.07997 * 120.04322 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0182 -2.3572 6 8 1.8588 1.1586 -2.4116 7 6 2.6498 -0.7285 -3.5875 8 6 4.1204 -1.1853 -3.3913 9 6 4.6329 -1.3083 -4.8477 10 6 3.9717 -0.1259 -5.5858 11 6 2.7109 0.2427 -4.7845 12 6 2.0323 -0.7104 1.2304 13 8 1.3253 -1.5174 1.7959 14 7 3.2674 -0.4490 1.7025 15 6 3.7203 -1.0871 2.8287 16 1 4.6805 -1.5814 2.8201 17 6 2.9441 -1.0976 3.9805 18 7 1.9411 -0.2575 4.1047 19 14 3.3258 -2.3060 5.3530 20 1 4.2851 -1.6884 6.3035 21 1 2.0723 -2.6528 6.0698 22 1 3.9232 -3.5372 4.7765 23 6 4.0867 0.4726 1.0441 24 6 4.4447 1.6593 1.6721 25 6 5.2585 2.5650 1.0207 26 6 5.7083 2.2971 -0.2594 27 6 5.3497 1.1192 -0.8895 28 6 4.5404 0.2067 -0.2422 29 1 -0.3633 -1.0233 -0.0938 30 1 -0.3633 0.4304 0.9332 31 1 -0.3634 0.5930 -0.8392 32 1 2.2489 -1.6317 -1.1527 33 1 2.0134 -1.5821 -3.8210 34 1 4.1637 -2.1490 -2.8838 35 1 4.6888 -0.4334 -2.8439 36 1 4.3168 -2.2556 -5.2847 37 1 5.7187 -1.2184 -4.8789 38 1 4.6548 0.7228 -5.6184 39 1 3.6980 -0.4237 -6.5980 40 1 2.7821 1.2704 -4.4283 41 1 1.8245 0.1244 -5.4079 42 1 1.4450 -0.2142 4.9371 43 1 4.0899 1.8714 2.6698 44 1 5.5405 3.4857 1.5098 45 1 6.3407 3.0094 -0.7683 46 1 5.7024 0.9133 -1.8893 47 1 4.2604 -0.7126 -0.7350 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282234078.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:22 Heat of formation + Delta-G solvation = -62.364538 kcal Electronic energy + Delta-G solvation = -30123.237510 eV Core-core repulsion = 26269.961410 eV Total energy + Delta-G solvation = -3853.276101 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.74844 -40.58143 -39.30686 -38.00749 -36.42643 -35.82682 -33.94192 -32.05602 -31.70546 -30.21879 -29.69222 -29.41677 -27.48101 -25.20161 -23.43794 -23.25382 -22.80707 -21.28911 -21.05462 -20.56938 -19.15911 -19.07252 -17.79099 -17.24558 -17.02156 -16.94590 -16.53928 -16.06135 -15.90402 -15.74780 -15.33426 -15.19243 -14.58563 -14.47182 -14.42482 -14.29889 -13.93741 -13.78532 -13.49395 -13.33412 -13.11643 -12.95096 -12.85268 -12.81180 -12.58292 -12.31225 -12.13119 -12.08733 -12.00644 -11.97955 -11.86251 -11.56765 -11.20485 -10.92313 -10.76960 -10.49161 -10.11852 -9.92340 -9.73129 -8.98093 -8.35174 -6.21673 0.51394 0.59377 1.34112 1.41207 1.49997 1.66409 1.72817 2.20799 2.57427 2.88405 3.01266 3.18451 3.56040 3.67331 3.79237 3.87377 4.07203 4.14753 4.18778 4.22346 4.32525 4.36240 4.53709 4.57361 4.63224 4.66206 4.67971 4.71086 4.78150 4.81148 4.89462 5.02687 5.03378 5.10654 5.18332 5.21420 5.29369 5.34040 5.36792 5.40115 5.49316 5.57007 5.58462 5.69615 5.79365 6.06773 6.25399 6.51983 6.88204 6.97695 7.25532 7.47010 8.07355 8.74683 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.014303 B = 0.004549 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.171113 B = 6153.660077 C = 6833.734594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.147 3.853 3 H 0.075 0.925 4 N -0.704 5.704 5 C 0.524 3.476 6 O -0.572 6.572 7 C -0.108 4.108 8 C -0.123 4.123 9 C -0.116 4.116 10 C -0.120 4.120 11 C -0.111 4.111 12 C 0.481 3.519 13 O -0.564 6.564 14 N -0.417 5.417 15 C -0.366 4.366 16 H 0.079 0.921 17 C 0.029 3.971 18 N -0.877 5.877 19 Si 0.979 3.021 20 H -0.264 1.264 21 H -0.288 1.288 22 H -0.263 1.263 23 C 0.126 3.874 24 C -0.142 4.142 25 C -0.112 4.112 26 C -0.133 4.133 27 C -0.106 4.106 28 C -0.138 4.138 29 H 0.065 0.935 30 H 0.047 0.953 31 H 0.070 0.930 32 H 0.408 0.592 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.078 0.922 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.266 0.734 43 H 0.093 0.907 44 H 0.141 0.859 45 H 0.153 0.847 46 H 0.147 0.853 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.067 0.217 -17.826 19.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.038 3.962 3 H 0.093 0.907 4 N -0.357 5.357 5 C 0.312 3.688 6 O -0.451 6.451 7 C -0.129 4.129 8 C -0.161 4.161 9 C -0.153 4.153 10 C -0.157 4.157 11 C -0.149 4.149 12 C 0.270 3.730 13 O -0.443 6.443 14 N -0.134 5.134 15 C -0.492 4.492 16 H 0.097 0.903 17 C -0.178 4.178 18 N -0.510 5.510 19 Si 0.803 3.197 20 H -0.189 1.189 21 H -0.214 1.214 22 H -0.187 1.187 23 C 0.035 3.965 24 C -0.162 4.162 25 C -0.130 4.130 26 C -0.151 4.151 27 C -0.124 4.124 28 C -0.158 4.158 29 H 0.084 0.916 30 H 0.066 0.934 31 H 0.089 0.911 32 H 0.244 0.756 33 H 0.137 0.863 34 H 0.101 0.899 35 H 0.087 0.913 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.111 0.889 44 H 0.159 0.841 45 H 0.171 0.829 46 H 0.165 0.835 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 6.275 0.634 -17.430 18.536 hybrid contribution -0.371 -0.629 1.699 1.850 sum 5.904 0.005 -15.730 16.802 Atomic orbital electron populations 1.21770 0.93201 1.02582 1.01453 1.20611 0.95507 0.96623 0.83421 0.90741 1.45914 1.67189 1.14192 1.08370 1.21205 0.76006 0.86913 0.84634 1.90655 1.51483 1.17691 1.85285 1.22314 0.99405 0.99820 0.91383 1.22756 0.92367 1.01915 0.99054 1.22328 1.00769 0.98933 0.93271 1.22127 0.95801 0.98547 0.99238 1.22056 0.99369 0.98849 0.94669 1.20697 0.83120 0.83529 0.85688 1.90494 1.55867 1.36993 1.60898 1.41098 1.12702 1.35403 1.24158 1.19246 1.06088 1.34156 0.89759 0.90343 1.26222 0.94619 0.96549 1.00363 1.69913 1.20242 1.34383 1.26497 0.85177 0.77469 0.79229 0.77861 1.18881 1.21364 1.18733 1.18504 0.95484 0.89722 0.92821 1.21325 1.00678 0.93990 1.00252 1.21245 0.96889 0.99091 0.95772 1.21403 1.01119 0.97943 0.94668 1.21243 0.97074 0.93886 1.00219 1.21437 0.99262 1.00931 0.94165 0.91640 0.93356 0.91145 0.75643 0.86250 0.89885 0.91304 0.90142 0.90376 0.91673 0.90379 0.92242 0.91063 0.92467 0.88868 0.84145 0.82944 0.83516 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 8.90 71.98 0.64 -4.54 16 2 C 0.15 6.12 1.95 44.24 0.09 6.20 16 3 H 0.07 3.41 6.64 -2.39 -0.02 3.39 16 4 N -0.70 -22.69 2.94 -446.10 -1.31 -24.00 16 5 C 0.52 15.54 6.35 87.66 0.56 16.10 16 6 O -0.57 -21.27 15.09 -3.04 -0.05 -21.31 16 7 C -0.11 -2.19 3.25 -10.34 -0.03 -2.23 16 8 C -0.12 -2.10 5.72 32.01 0.18 -1.92 16 9 C -0.12 -1.47 6.82 31.67 0.22 -1.25 16 10 C -0.12 -1.67 6.80 31.32 0.21 -1.46 16 11 C -0.11 -2.16 6.18 31.32 0.19 -1.97 16 12 C 0.48 24.38 6.17 87.65 0.54 24.92 16 13 O -0.56 -32.66 14.52 -3.04 -0.04 -32.70 16 14 N -0.42 -21.25 2.51 -458.89 -1.15 -22.41 16 15 C -0.37 -20.30 8.88 84.02 0.75 -19.56 16 16 H 0.08 4.25 7.88 -2.91 -0.02 4.23 16 17 C 0.03 1.64 4.50 84.91 0.38 2.02 16 18 N -0.88 -52.15 12.21 21.65 0.26 -51.89 16 19 Si 0.98 44.58 29.58 68.60 2.03 46.61 16 20 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 22 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 23 C 0.13 5.54 4.09 38.22 0.16 5.70 16 24 C -0.14 -6.05 9.78 22.41 0.22 -5.83 16 25 C -0.11 -3.64 10.04 22.25 0.22 -3.41 16 26 C -0.13 -3.69 10.04 22.30 0.22 -3.46 16 27 C -0.11 -3.04 9.56 22.25 0.21 -2.83 16 28 C -0.14 -4.87 7.28 22.41 0.16 -4.70 16 29 H 0.06 2.50 8.05 -2.39 -0.02 2.48 16 30 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.41 11.87 8.49 -92.72 -0.79 11.08 16 33 H 0.12 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.07 1.35 5.09 -2.39 -0.01 1.33 16 36 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.06 1.48 6.85 -2.39 -0.02 1.47 16 41 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.27 15.14 8.32 -92.70 -0.77 14.37 16 43 H 0.09 4.48 8.06 -2.91 -0.02 4.46 16 44 H 0.14 3.75 8.06 -2.91 -0.02 3.72 16 45 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 46 H 0.15 3.20 6.67 -2.91 -0.02 3.18 16 47 H 0.13 4.08 5.35 -2.91 -0.02 4.07 16 Total: -1.00 -73.55 375.25 4.86 -68.70 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: 0.20 Total: 35.23 kcal Atomic # 6 Polarization: -3.15 SS G_CDS: 4.92 Total: 1.78 kcal Atomic # 7 Polarization: -96.10 SS G_CDS: -2.20 Total: -98.30 kcal Atomic # 8 Polarization: -53.93 SS G_CDS: -0.09 Total: -54.02 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -73.55 4.86 -68.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282234078.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.331 kcal (2) G-P(sol) polarization free energy of solvation -73.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds