Wall clock time and date at job start Tue Mar 31 2020 15:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99809 * 2 1 4 4 N 1.46504 * 109.47234 * 126.21810 * 3 2 1 5 5 C 1.37547 * 127.16942 * 84.07993 * 4 3 2 6 6 C 1.47830 * 126.47602 * 0.02562 * 5 4 3 7 7 C 1.39564 * 120.15206 * 352.36026 * 6 5 4 8 8 C 1.37946 * 119.87699 * 179.97438 * 7 6 5 9 9 C 1.38392 * 120.19572 * 0.02666 * 8 7 6 10 10 C 1.38297 * 120.31605 * 359.67627 * 9 8 7 11 11 C 1.38222 * 120.11636 * 0.59906 * 10 9 8 12 12 F 1.35096 * 120.09770 * 179.69804 * 11 10 9 13 13 N 1.31268 * 107.05516 * 179.74346 * 5 4 3 14 14 N 1.28517 * 109.93355 * 0.22517 * 13 5 4 15 15 C 1.31349 * 110.08965 * 0.02562 * 14 13 5 16 16 N 1.38436 * 126.36770 * 180.02562 * 15 14 13 17 17 C 1.46902 * 110.99711 * 260.18004 * 16 15 14 18 18 C 1.46891 * 111.00256 * 24.13596 * 16 15 14 19 19 H 1.09008 * 109.47567 * 299.99947 * 18 16 15 20 20 C 1.52997 * 109.47377 * 60.00179 * 18 16 15 21 21 C 1.50709 * 109.47300 * 179.97438 * 18 16 15 22 22 H 1.08003 * 119.99490 * 0.02562 * 21 18 16 23 23 C 1.37868 * 120.00199 * 179.97438 * 21 18 16 24 24 N 1.31512 * 120.00000 * 179.97438 * 23 21 18 25 25 Si 1.86807 * 120.00150 * 0.02562 * 23 21 18 26 26 H 1.48497 * 109.46937 * 89.99831 * 25 23 21 27 27 H 1.48499 * 109.47042 * 209.99949 * 25 23 21 28 28 H 1.48497 * 109.46831 * 329.99821 * 25 23 21 29 29 H 1.08000 * 119.99913 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99917 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99913 * 179.97438 * 2 1 3 32 32 H 1.08993 * 109.47491 * 6.21324 * 3 2 1 33 33 H 1.09006 * 109.46744 * 246.21030 * 3 2 1 34 34 H 1.07998 * 120.06509 * 0.02562 * 7 6 5 35 35 H 1.07993 * 119.90331 * 180.02562 * 8 7 6 36 36 H 1.07996 * 119.83875 * 179.97438 * 9 8 7 37 37 H 1.07998 * 119.93802 * 180.30382 * 10 9 8 38 38 H 1.09002 * 109.47064 * 66.26610 * 17 16 15 39 39 H 1.09003 * 109.47029 * 186.25867 * 17 16 15 40 40 H 1.08999 * 109.47423 * 306.26423 * 17 16 15 41 41 H 1.09001 * 109.47611 * 59.99394 * 20 18 16 42 42 H 1.08997 * 109.47360 * 179.97438 * 20 18 16 43 43 H 1.09002 * 109.46911 * 299.99612 * 20 18 16 44 44 H 0.97007 * 120.00071 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0144 1.3200 1.1144 5 6 4.2816 0.7853 1.1327 6 6 4.9534 0.0786 0.0216 7 6 4.2439 -0.2404 -1.1372 8 6 4.8766 -0.8996 -2.1707 9 6 6.2121 -1.2456 -2.0615 10 6 6.9244 -0.9281 -0.9195 11 6 6.3019 -0.2729 0.1264 12 9 6.9966 0.0318 1.2443 13 7 4.7840 1.0265 2.3212 14 7 3.9277 1.6622 3.0382 15 6 2.8264 1.8652 2.3516 16 7 1.6893 2.5166 2.7977 17 6 0.6585 1.5542 3.2091 18 6 2.0088 3.4450 3.8903 19 1 2.4433 2.8910 4.7225 20 6 3.0103 4.4901 3.3951 21 6 0.7493 4.1344 4.3482 22 1 -0.1942 3.9054 3.8751 23 6 0.8013 5.0566 5.3717 24 7 -0.2977 5.6586 5.7710 25 14 2.4332 5.4522 6.1905 26 1 3.0853 6.5787 5.4757 27 1 2.1969 5.8345 7.6059 28 1 3.3142 4.2579 6.1408 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3604 2.1306 0.1112 33 1 2.6041 1.4125 -0.9404 34 1 3.2017 0.0289 -1.2249 35 1 4.3281 -1.1462 -3.0677 36 1 6.7015 -1.7619 -2.8740 37 1 7.9676 -1.1967 -0.8428 38 1 1.0016 1.0076 4.0875 39 1 -0.2613 2.0874 3.4494 40 1 0.4703 0.8534 2.3957 41 1 2.5759 5.0441 2.5629 42 1 3.2471 5.1793 4.2057 43 1 3.9214 3.9919 3.0636 44 1 -0.2610 6.3078 6.4909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290519103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:22 Heat of formation + Delta-G solvation = 122.905427 kcal Electronic energy + Delta-G solvation = -28764.986349 eV Core-core repulsion = 24828.576603 eV Total energy + Delta-G solvation = -3936.409746 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -48.81736 -42.67125 -39.15468 -37.35766 -36.37440 -32.97225 -32.92404 -31.98587 -30.89932 -30.24977 -28.74293 -27.07796 -25.54451 -24.54753 -23.62519 -23.16242 -21.72858 -21.24453 -20.05380 -19.53706 -17.76745 -17.33045 -16.83454 -16.50231 -16.20683 -16.08099 -15.53650 -15.47456 -15.11491 -14.95281 -14.29092 -14.12449 -13.85394 -13.61210 -13.41262 -13.18021 -12.83045 -12.61369 -12.49928 -12.23846 -12.16361 -11.86487 -11.73351 -11.47693 -11.12663 -11.08566 -10.80124 -10.69048 -10.34776 -10.16648 -10.08259 -9.86130 -9.79127 -9.51910 -9.28816 -9.09281 -8.63488 -8.49102 -7.65428 -6.14705 -4.15965 0.52451 0.88606 1.70130 2.14685 2.55502 3.05231 3.29399 3.40666 3.47721 3.50329 3.98760 4.07232 4.28915 4.38085 4.39682 4.46884 4.55072 4.60654 4.78377 4.91259 4.96259 5.18669 5.29778 5.36443 5.46571 5.50227 5.54679 5.71756 5.82440 5.84340 6.01778 6.02167 6.07891 6.11975 6.22980 6.33673 6.39071 6.43248 6.46209 6.53554 6.59722 6.80495 6.92386 7.12081 7.41894 7.59770 7.86584 8.47817 8.85103 9.04595 9.46001 10.96844 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.017206 B = 0.003811 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.937180 B = 7344.584501 C = 8626.888427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.195 4.195 3 C 0.129 3.871 4 N -0.468 5.468 5 C 0.180 3.820 6 C -0.031 4.031 7 C -0.104 4.104 8 C -0.127 4.127 9 C -0.087 4.087 10 C -0.154 4.154 11 C 0.136 3.864 12 F -0.114 7.114 13 N -0.253 5.253 14 N -0.317 5.317 15 C 0.393 3.607 16 N -0.452 5.452 17 C 0.041 3.959 18 C 0.198 3.802 19 H 0.026 0.974 20 C -0.147 4.147 21 C -0.516 4.516 22 H 0.085 0.915 23 C 0.079 3.921 24 N -0.894 5.894 25 Si 0.879 3.121 26 H -0.277 1.277 27 H -0.295 1.295 28 H -0.260 1.260 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.146 0.854 35 H 0.133 0.867 36 H 0.134 0.866 37 H 0.141 0.859 38 H 0.033 0.967 39 H 0.100 0.900 40 H 0.052 0.948 41 H 0.054 0.946 42 H 0.048 0.952 43 H 0.037 0.963 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.774 -15.052 -19.404 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.214 4.214 3 C 0.007 3.993 4 N -0.162 5.162 5 C -0.083 4.083 6 C -0.034 4.034 7 C -0.124 4.124 8 C -0.146 4.146 9 C -0.106 4.106 10 C -0.173 4.173 11 C 0.114 3.886 12 F -0.092 7.092 13 N -0.094 5.094 14 N -0.162 5.162 15 C 0.038 3.962 16 N -0.177 5.177 17 C -0.106 4.106 18 C 0.092 3.908 19 H 0.044 0.956 20 C -0.205 4.205 21 C -0.554 4.554 22 H 0.103 0.897 23 C -0.124 4.124 24 N -0.532 5.532 25 Si 0.709 3.291 26 H -0.204 1.204 27 H -0.222 1.222 28 H -0.185 1.185 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.122 0.878 34 H 0.163 0.837 35 H 0.151 0.849 36 H 0.152 0.848 37 H 0.158 0.842 38 H 0.052 0.948 39 H 0.118 0.882 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.448 -14.539 -18.398 24.604 hybrid contribution 0.276 0.081 0.192 0.345 sum 7.724 -14.458 -18.206 24.498 Atomic orbital electron populations 1.24064 0.95454 1.02994 0.95855 1.23134 0.96587 0.97821 1.03886 1.21197 0.91768 0.98179 0.88196 1.46225 1.12905 1.44874 1.12207 1.22153 0.84281 1.05060 0.96856 1.17523 0.92007 1.01391 0.92525 1.21683 1.01039 0.97840 0.91817 1.21083 0.95033 0.99474 0.98975 1.21122 0.94199 0.98303 0.96997 1.21132 1.01434 1.01413 0.93284 1.17598 0.88653 0.98119 0.84226 1.91617 1.78047 1.90406 1.49109 1.74439 1.23186 1.12004 0.99771 1.74837 1.00239 1.17323 1.23804 1.23032 0.95583 0.94688 0.82848 1.58860 1.03315 1.15250 1.40237 1.22396 0.95848 0.93830 0.98483 1.19786 0.96324 0.88693 0.85967 0.95612 1.22174 0.98150 0.99376 1.00792 1.20847 0.93066 1.23369 1.18154 0.89691 1.24804 0.96333 0.95210 0.96092 1.69855 1.27242 1.27357 1.28729 0.86963 0.84575 0.79722 0.77877 1.20394 1.22245 1.18477 0.87380 0.87551 0.86601 0.86840 0.87829 0.83659 0.84870 0.84780 0.84158 0.94807 0.88180 0.92910 0.92699 0.93352 0.94413 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 13.19 29.01 0.38 -0.83 16 2 C -0.20 -1.86 7.96 -36.03 -0.29 -2.15 16 3 C 0.13 1.48 5.74 -5.19 -0.03 1.45 16 4 N -0.47 -7.60 2.82 -115.96 -0.33 -7.93 16 5 C 0.18 3.08 7.76 -153.79 -1.19 1.88 16 6 C -0.03 -0.41 5.88 -104.91 -0.62 -1.03 16 7 C -0.10 -1.00 8.69 -39.19 -0.34 -1.34 16 8 C -0.13 -0.91 10.03 -39.63 -0.40 -1.31 16 9 C -0.09 -0.61 10.04 -39.50 -0.40 -1.01 16 10 C -0.15 -1.40 10.01 -39.57 -0.40 -1.80 16 11 C 0.14 1.76 7.28 -39.02 -0.28 1.48 16 12 F -0.11 -1.79 15.85 2.25 0.04 -1.76 16 13 N -0.25 -5.28 10.92 32.58 0.36 -4.92 16 14 N -0.32 -7.16 10.21 30.32 0.31 -6.85 16 15 C 0.39 7.93 5.92 -318.85 -1.89 6.04 16 16 N -0.45 -9.42 4.61 -176.07 -0.81 -10.23 16 17 C 0.04 0.76 9.14 60.07 0.55 1.31 16 18 C 0.20 4.84 1.33 -68.87 -0.09 4.75 16 19 H 0.03 0.69 6.94 -51.92 -0.36 0.33 16 20 C -0.15 -3.53 8.51 37.16 0.32 -3.21 16 21 C -0.52 -14.02 8.53 -34.44 -0.29 -14.31 16 22 H 0.09 2.41 6.64 -52.48 -0.35 2.06 16 23 C 0.08 2.23 5.45 -17.82 -0.10 2.13 16 24 N -0.89 -26.61 13.96 55.43 0.77 -25.84 16 25 Si 0.88 22.33 24.37 -169.99 -4.14 18.18 16 26 H -0.28 -6.90 6.87 56.52 0.39 -6.51 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 28 H -0.26 -6.63 6.53 56.52 0.37 -6.26 16 29 H 0.11 0.90 7.85 -52.49 -0.41 0.49 16 30 H 0.11 0.73 8.06 -52.48 -0.42 0.31 16 31 H 0.12 1.08 7.50 -52.49 -0.39 0.69 16 32 H 0.11 1.35 7.75 -51.93 -0.40 0.95 16 33 H 0.10 0.94 5.81 -51.93 -0.30 0.63 16 34 H 0.15 1.19 3.03 -52.49 -0.16 1.03 16 35 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 36 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 37 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.10 1.92 6.32 -51.93 -0.33 1.60 16 40 H 0.05 0.80 6.19 -51.93 -0.32 0.48 16 41 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 42 H 0.05 1.19 3.27 -51.93 -0.17 1.02 16 43 H 0.04 0.88 6.37 -51.93 -0.33 0.55 16 44 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 353.19 15.07 5.32 5.32 Total: -1.00 -33.80 353.19 -8.79 -42.59 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -5.25 Total: -0.62 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -5.06 Total: -7.94 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: 0.30 Total: -55.77 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.14 Total: 18.18 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.80 -8.79 -42.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290519103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.495 kcal (2) G-P(sol) polarization free energy of solvation -33.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.589 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds