Wall clock time and date at job start Tue Mar 31 2020 15:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 119.99809 * 2 1 4 4 N 1.46504 * 109.47234 * 126.21810 * 3 2 1 5 5 C 1.37547 * 127.16942 * 84.07993 * 4 3 2 6 6 C 1.47830 * 126.47602 * 0.02562 * 5 4 3 7 7 C 1.39564 * 120.15206 * 352.36026 * 6 5 4 8 8 C 1.37946 * 119.87699 * 179.97438 * 7 6 5 9 9 C 1.38392 * 120.19572 * 0.02666 * 8 7 6 10 10 C 1.38297 * 120.31605 * 359.67627 * 9 8 7 11 11 C 1.38222 * 120.11636 * 0.59906 * 10 9 8 12 12 F 1.35096 * 120.09770 * 179.69804 * 11 10 9 13 13 N 1.31268 * 107.05516 * 179.74346 * 5 4 3 14 14 N 1.28517 * 109.93355 * 0.22517 * 13 5 4 15 15 C 1.31349 * 110.08965 * 0.02562 * 14 13 5 16 16 N 1.38436 * 126.36770 * 180.02562 * 15 14 13 17 17 C 1.46902 * 110.99711 * 260.18004 * 16 15 14 18 18 C 1.46891 * 111.00256 * 24.13596 * 16 15 14 19 19 H 1.09008 * 109.47567 * 299.99947 * 18 16 15 20 20 C 1.52997 * 109.47377 * 60.00179 * 18 16 15 21 21 C 1.50709 * 109.47300 * 179.97438 * 18 16 15 22 22 H 1.08003 * 119.99490 * 0.02562 * 21 18 16 23 23 C 1.37868 * 120.00199 * 179.97438 * 21 18 16 24 24 N 1.31512 * 120.00000 * 179.97438 * 23 21 18 25 25 Si 1.86807 * 120.00150 * 0.02562 * 23 21 18 26 26 H 1.48497 * 109.46937 * 89.99831 * 25 23 21 27 27 H 1.48499 * 109.47042 * 209.99949 * 25 23 21 28 28 H 1.48497 * 109.46831 * 329.99821 * 25 23 21 29 29 H 1.08000 * 119.99913 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.99917 * 180.02562 * 1 2 3 31 31 H 1.08000 * 119.99913 * 179.97438 * 2 1 3 32 32 H 1.08993 * 109.47491 * 6.21324 * 3 2 1 33 33 H 1.09006 * 109.46744 * 246.21030 * 3 2 1 34 34 H 1.07998 * 120.06509 * 0.02562 * 7 6 5 35 35 H 1.07993 * 119.90331 * 180.02562 * 8 7 6 36 36 H 1.07996 * 119.83875 * 179.97438 * 9 8 7 37 37 H 1.07998 * 119.93802 * 180.30382 * 10 9 8 38 38 H 1.09002 * 109.47064 * 66.26610 * 17 16 15 39 39 H 1.09003 * 109.47029 * 186.25867 * 17 16 15 40 40 H 1.08999 * 109.47423 * 306.26423 * 17 16 15 41 41 H 1.09001 * 109.47611 * 59.99394 * 20 18 16 42 42 H 1.08997 * 109.47360 * 179.97438 * 20 18 16 43 43 H 1.09002 * 109.46911 * 299.99612 * 20 18 16 44 44 H 0.97007 * 120.00071 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0144 1.3200 1.1144 5 6 4.2816 0.7853 1.1327 6 6 4.9534 0.0786 0.0216 7 6 4.2439 -0.2404 -1.1372 8 6 4.8766 -0.8996 -2.1707 9 6 6.2121 -1.2456 -2.0615 10 6 6.9244 -0.9281 -0.9195 11 6 6.3019 -0.2729 0.1264 12 9 6.9966 0.0318 1.2443 13 7 4.7840 1.0265 2.3212 14 7 3.9277 1.6622 3.0382 15 6 2.8264 1.8652 2.3516 16 7 1.6893 2.5166 2.7977 17 6 0.6585 1.5542 3.2091 18 6 2.0088 3.4450 3.8903 19 1 2.4433 2.8910 4.7225 20 6 3.0103 4.4901 3.3951 21 6 0.7493 4.1344 4.3482 22 1 -0.1942 3.9054 3.8751 23 6 0.8013 5.0566 5.3717 24 7 -0.2977 5.6586 5.7710 25 14 2.4332 5.4522 6.1905 26 1 3.0853 6.5787 5.4757 27 1 2.1969 5.8345 7.6059 28 1 3.3142 4.2579 6.1408 29 1 -0.5400 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3604 2.1306 0.1112 33 1 2.6041 1.4125 -0.9404 34 1 3.2017 0.0289 -1.2249 35 1 4.3281 -1.1462 -3.0677 36 1 6.7015 -1.7619 -2.8740 37 1 7.9676 -1.1967 -0.8428 38 1 1.0016 1.0076 4.0875 39 1 -0.2613 2.0874 3.4494 40 1 0.4703 0.8534 2.3957 41 1 2.5759 5.0441 2.5629 42 1 3.2471 5.1793 4.2057 43 1 3.9214 3.9919 3.0636 44 1 -0.2610 6.3078 6.4909 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290519103.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:21 Heat of formation + Delta-G solvation = 103.028658 kcal Electronic energy + Delta-G solvation = -28765.848271 eV Core-core repulsion = 24828.576603 eV Total energy + Delta-G solvation = -3937.271668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.155 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.84089 -44.05534 -39.94810 -39.03719 -37.38958 -34.94169 -33.91183 -33.17193 -32.11956 -31.63641 -30.03502 -28.11060 -27.33122 -26.29651 -24.67674 -24.09902 -23.24007 -22.28440 -21.14524 -20.87090 -19.05414 -18.68945 -18.18603 -17.74738 -17.34254 -17.16554 -16.90310 -16.57488 -16.50274 -16.18059 -15.71098 -15.35271 -15.08465 -14.89284 -14.58464 -14.46650 -14.17123 -14.07698 -13.74590 -13.51284 -13.31792 -13.02458 -12.91243 -12.80184 -12.61292 -12.58617 -12.48626 -12.19625 -11.99116 -11.75050 -11.56786 -11.37400 -11.19497 -10.94792 -10.80677 -10.56246 -10.00361 -9.78393 -9.11886 -8.36096 -6.39237 -0.36008 0.17844 0.79830 0.91059 1.24203 1.32454 1.42905 1.47562 1.75188 2.25764 2.65384 2.74963 2.99358 3.06984 3.22099 3.45102 3.68799 3.77263 3.91769 3.93256 4.02630 4.16852 4.31918 4.34803 4.40091 4.44158 4.46454 4.50289 4.59488 4.65376 4.77080 4.83133 4.87934 4.95881 4.98831 5.02944 5.14468 5.18379 5.26609 5.37136 5.40389 5.51153 5.55546 5.64880 5.74486 5.85351 6.09147 6.46053 6.64357 7.25059 7.61557 8.78412 Molecular weight = 330.16amu Principal moments of inertia in cm(-1) A = 0.017206 B = 0.003811 C = 0.003245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.937180 B = 7344.584501 C = 8626.888427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.206 4.206 3 C 0.119 3.881 4 N -0.458 5.458 5 C 0.206 3.794 6 C -0.070 4.070 7 C -0.096 4.096 8 C -0.114 4.114 9 C -0.066 4.066 10 C -0.153 4.153 11 C 0.103 3.897 12 F -0.142 7.142 13 N -0.306 5.306 14 N -0.361 5.361 15 C 0.374 3.626 16 N -0.447 5.447 17 C 0.046 3.954 18 C 0.207 3.793 19 H 0.000 1.000 20 C -0.138 4.138 21 C -0.509 4.509 22 H 0.067 0.933 23 C 0.036 3.964 24 N -0.931 5.931 25 Si 0.926 3.074 26 H -0.266 1.266 27 H -0.289 1.289 28 H -0.268 1.268 29 H 0.108 0.892 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.109 0.891 33 H 0.131 0.869 34 H 0.159 0.841 35 H 0.176 0.824 36 H 0.177 0.823 37 H 0.159 0.841 38 H 0.018 0.982 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.059 0.941 42 H 0.040 0.960 43 H 0.037 0.963 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.235 -17.136 -23.561 30.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.225 4.225 3 C -0.001 4.001 4 N -0.151 5.151 5 C -0.059 4.059 6 C -0.073 4.073 7 C -0.116 4.116 8 C -0.132 4.132 9 C -0.084 4.084 10 C -0.171 4.171 11 C 0.081 3.919 12 F -0.121 7.121 13 N -0.146 5.146 14 N -0.206 5.206 15 C 0.017 3.983 16 N -0.172 5.172 17 C -0.101 4.101 18 C 0.100 3.900 19 H 0.018 0.982 20 C -0.195 4.195 21 C -0.547 4.547 22 H 0.086 0.914 23 C -0.164 4.164 24 N -0.570 5.570 25 Si 0.754 3.246 26 H -0.192 1.192 27 H -0.217 1.217 28 H -0.193 1.193 29 H 0.126 0.874 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.127 0.873 33 H 0.149 0.851 34 H 0.176 0.824 35 H 0.193 0.807 36 H 0.195 0.805 37 H 0.177 0.823 38 H 0.036 0.964 39 H 0.108 0.892 40 H 0.105 0.895 41 H 0.079 0.921 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 7.909 -16.634 -22.585 29.143 hybrid contribution 0.144 0.527 1.206 1.324 sum 8.053 -16.107 -21.379 27.953 Atomic orbital electron populations 1.24281 0.95086 1.04015 0.93577 1.23016 0.96838 0.96833 1.05819 1.21618 0.91453 0.99378 0.87605 1.46404 1.13323 1.43531 1.11854 1.22894 0.83964 1.02509 0.96561 1.17739 0.92603 1.03946 0.93051 1.21905 1.01500 0.97302 0.90873 1.21603 0.95242 0.97165 0.99187 1.21693 0.94065 0.96021 0.96646 1.21459 1.02550 1.00334 0.92771 1.18139 0.88976 1.00055 0.84688 1.91540 1.78636 1.91022 1.50901 1.74343 1.24038 1.14457 1.01751 1.74668 1.01426 1.18656 1.25826 1.22796 0.94875 0.96283 0.84314 1.58778 1.04011 1.15731 1.38670 1.22399 0.94654 0.93778 0.99239 1.19440 0.94851 0.89166 0.86549 0.98233 1.22039 0.98008 0.98940 1.00541 1.21001 0.93470 1.22728 1.17486 0.91446 1.25385 0.98658 0.95488 0.96847 1.69939 1.28828 1.28488 1.29753 0.86199 0.81498 0.79465 0.77436 1.19221 1.21656 1.19266 0.87373 0.85541 0.86014 0.87328 0.85114 0.82401 0.80708 0.80526 0.82307 0.96352 0.89194 0.89474 0.92149 0.94106 0.94413 0.92113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 13.19 67.78 0.89 -0.90 16 2 C -0.21 -3.37 7.96 25.65 0.20 -3.16 16 3 C 0.12 2.52 5.74 85.63 0.49 3.01 16 4 N -0.46 -14.78 2.82 -520.79 -1.47 -16.24 16 5 C 0.21 7.13 7.76 136.21 1.06 8.19 16 6 C -0.07 -1.79 5.88 -20.05 -0.12 -1.90 16 7 C -0.10 -1.50 8.69 22.52 0.20 -1.31 16 8 C -0.11 -0.98 10.03 22.24 0.22 -0.76 16 9 C -0.07 -0.56 10.04 22.32 0.22 -0.33 16 10 C -0.15 -2.33 10.01 22.28 0.22 -2.11 16 11 C 0.10 2.61 7.28 22.63 0.16 2.77 16 12 F -0.14 -4.71 15.85 44.97 0.71 -4.00 16 13 N -0.31 -13.40 10.92 -50.82 -0.56 -13.96 16 14 N -0.36 -17.10 10.21 -57.99 -0.59 -17.69 16 15 C 0.37 15.46 5.92 260.10 1.54 17.00 16 16 N -0.45 -19.09 4.61 -710.97 -3.28 -22.37 16 17 C 0.05 1.73 9.14 127.69 1.17 2.90 16 18 C 0.21 10.44 1.33 44.17 0.06 10.50 16 19 H 0.00 0.00 6.94 -2.38 -0.02 -0.02 16 20 C -0.14 -6.72 8.51 71.98 0.61 -6.11 16 21 C -0.51 -28.37 8.53 25.60 0.22 -28.16 16 22 H 0.07 3.94 6.64 -2.91 -0.02 3.92 16 23 C 0.04 2.08 5.45 84.65 0.46 2.54 16 24 N -0.93 -56.43 13.96 21.44 0.30 -56.13 16 25 Si 0.93 46.95 24.37 68.60 1.67 48.62 16 26 H -0.27 -12.94 6.87 99.48 0.68 -12.26 16 27 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 28 H -0.27 -13.82 6.53 99.48 0.65 -13.17 16 29 H 0.11 1.51 7.85 -2.91 -0.02 1.49 16 30 H 0.13 1.26 8.06 -2.91 -0.02 1.23 16 31 H 0.12 1.89 7.50 -2.91 -0.02 1.87 16 32 H 0.11 2.42 7.75 -2.39 -0.02 2.41 16 33 H 0.13 1.98 5.81 -2.38 -0.01 1.97 16 34 H 0.16 1.97 3.03 -2.91 -0.01 1.96 16 35 H 0.18 0.17 8.06 -2.91 -0.02 0.15 16 36 H 0.18 0.10 8.06 -2.91 -0.02 0.08 16 37 H 0.16 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.02 0.72 8.14 -2.39 -0.02 0.71 16 39 H 0.09 3.55 6.32 -2.39 -0.02 3.54 16 40 H 0.09 2.61 6.19 -2.39 -0.01 2.59 16 41 H 0.06 2.82 8.14 -2.39 -0.02 2.80 16 42 H 0.04 2.02 3.27 -2.39 -0.01 2.01 16 43 H 0.04 1.82 6.37 -2.39 -0.02 1.80 16 44 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -79.15 353.19 5.37 -73.77 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: 0.96 Total: 5.84 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 7.62 Total: 2.16 kcal Atomic # 7 Polarization: -120.80 SS G_CDS: -5.59 Total: -126.40 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.71 Total: -4.00 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.67 Total: 48.62 kcal Total: -79.15 5.37 -73.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290519103.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.803 kcal (2) G-P(sol) polarization free energy of solvation -79.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds