Wall clock time and date at job start Tue Mar 31 2020 15:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47028 * 2 1 4 4 C 1.50701 * 109.47356 * 120.00336 * 2 1 3 5 5 H 1.07996 * 119.99601 * 119.99904 * 4 2 1 6 6 C 1.37874 * 119.99755 * 300.00071 * 4 2 1 7 7 N 1.31520 * 120.00363 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99931 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47249 * 59.99868 * 8 6 4 10 10 H 1.48498 * 109.47439 * 179.97438 * 8 6 4 11 11 H 1.48509 * 109.47092 * 299.99742 * 8 6 4 12 12 N 1.46504 * 109.46844 * 240.00499 * 2 1 3 13 13 C 1.46496 * 120.00022 * 299.99383 * 12 2 1 14 14 C 1.34776 * 119.99770 * 120.00387 * 12 2 1 15 15 O 1.21356 * 120.00314 * 354.38801 * 14 12 2 16 16 C 1.49351 * 119.99801 * 174.39476 * 14 12 2 17 17 O 1.21379 * 120.00062 * 0.65282 * 16 14 12 18 18 N 1.34780 * 120.00440 * 180.37854 * 16 14 12 19 19 C 1.39724 * 120.00388 * 174.63224 * 18 16 14 20 20 C 1.38948 * 120.07582 * 330.64014 * 19 18 16 21 21 C 1.38071 * 119.92298 * 179.79141 * 20 19 18 22 22 C 1.38316 * 120.07610 * 0.46418 * 21 20 19 23 23 C 1.38272 * 120.15048 * 359.79136 * 22 21 20 24 24 C 1.50706 * 119.95889 * 179.97438 * 23 22 21 25 25 C 1.53778 * 113.61366 * 39.15896 * 24 23 22 26 26 C 1.53952 * 87.01768 * 220.04645 * 25 24 23 27 27 C 1.53773 * 87.11332 * 25.36247 * 26 25 24 28 28 C 1.38113 * 120.07763 * 359.97438 * 23 22 21 29 29 H 1.08996 * 109.46951 * 299.99921 * 1 2 3 30 30 H 1.09001 * 109.47074 * 59.99317 * 1 2 3 31 31 H 1.08991 * 109.46979 * 179.97438 * 1 2 3 32 32 H 0.97001 * 120.00045 * 180.02562 * 7 6 4 33 33 H 1.08991 * 109.47483 * 263.76604 * 13 12 2 34 34 H 1.09004 * 109.47025 * 23.76660 * 13 12 2 35 35 H 1.08997 * 109.46906 * 143.76085 * 13 12 2 36 36 H 0.97001 * 119.99325 * 354.62883 * 18 16 14 37 37 H 1.07997 * 120.03500 * 0.02781 * 20 19 18 38 38 H 1.08001 * 119.96189 * 180.21051 * 21 20 19 39 39 H 1.08000 * 119.92275 * 179.76326 * 22 21 20 40 40 H 1.09002 * 112.84624 * 170.35168 * 24 23 22 41 41 H 1.09000 * 113.61643 * 334.56893 * 25 24 23 42 42 H 1.09003 * 113.61190 * 105.46948 * 25 24 23 43 43 H 1.09003 * 113.53398 * 270.81125 * 26 25 24 44 44 H 1.08994 * 113.74213 * 139.94753 * 26 25 24 45 45 H 1.09003 * 113.61570 * 220.09160 * 27 26 25 46 46 H 1.09007 * 113.61250 * 89.18689 * 27 26 25 47 47 H 1.07999 * 120.03918 * 179.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3226 -1.1197 4.0078 9 1 3.8075 -1.1190 4.0076 10 1 1.8280 -0.4195 5.2204 11 1 1.8281 -2.5200 4.0080 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4281 14 6 2.7932 -0.0355 -2.0833 15 8 3.0028 1.1519 -1.9454 16 6 3.3938 -0.7708 -3.2362 17 8 3.1744 -1.9558 -3.3809 18 7 4.1749 -0.1174 -4.1191 19 6 4.8272 -0.8249 -5.1322 20 6 5.1984 -2.1484 -4.9293 21 6 5.8390 -2.8459 -5.9341 22 6 6.1197 -2.2257 -7.1381 23 6 5.7564 -0.9071 -7.3415 24 6 6.0649 -0.2355 -8.6548 25 6 5.8652 -1.1488 -9.8757 26 6 7.1463 -0.5208 -10.4542 27 6 7.5625 -0.2239 -9.0040 28 6 5.1111 -0.2050 -6.3424 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7095 1.1617 3.4845 33 1 2.4693 -2.7349 -1.0700 34 1 0.7453 -2.3294 -0.8918 35 1 1.5152 -2.2585 -2.4951 36 1 4.2842 0.8440 -4.0512 37 1 4.9828 -2.6321 -3.9881 38 1 6.1248 -3.8757 -5.7783 39 1 6.6243 -2.7724 -7.9210 40 1 5.5856 0.7384 -8.7550 41 1 5.9637 -2.2102 -9.6478 42 1 4.9676 -0.9197 -10.4502 43 1 6.9623 0.3747 -11.0478 44 1 7.7969 -1.2359 -10.9575 45 1 8.0332 0.7509 -8.8757 46 1 8.1260 -1.0319 -8.5373 47 1 4.8280 0.8250 -6.5018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291638698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:09 Heat of formation + Delta-G solvation = -11.700929 kcal Electronic energy + Delta-G solvation = -27650.018470 eV Core-core repulsion = 23798.939308 eV Total energy + Delta-G solvation = -3851.079162 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.95273 -39.95685 -38.57857 -37.47137 -35.85458 -34.57825 -32.79399 -31.36221 -29.88581 -29.46856 -26.33267 -25.93169 -25.74837 -25.32428 -24.76432 -22.52434 -22.17268 -20.60295 -19.40331 -19.23109 -17.62210 -17.19972 -16.57190 -16.39688 -15.94561 -15.76400 -15.53066 -15.22968 -14.89780 -14.55374 -14.38485 -13.88011 -13.59955 -13.34554 -13.26623 -12.83735 -12.79978 -12.64084 -12.40161 -12.33929 -12.07491 -11.67358 -11.57342 -11.53707 -11.12303 -10.92456 -10.87080 -10.79823 -10.76160 -10.72991 -10.59107 -10.36139 -10.26350 -10.21787 -9.27436 -8.91738 -8.77220 -8.49184 -8.15205 -7.77157 -6.13932 -4.22642 1.07887 1.27491 1.93282 2.67156 3.25982 3.30693 3.33133 3.52834 3.77017 3.98692 4.29516 4.34153 4.35424 4.40993 4.67625 4.71902 4.78404 4.87094 5.05387 5.17573 5.20728 5.33426 5.34766 5.42739 5.45853 5.53376 5.58539 5.64210 5.84343 5.86787 5.97552 6.08747 6.16832 6.23504 6.27896 6.41135 6.51524 6.53294 6.67971 6.72444 6.92152 6.94569 7.11268 7.26940 7.35143 7.62815 7.83097 7.96868 8.05773 8.31738 8.55819 8.82611 9.43709 10.91368 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.028609 B = 0.002215 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.475443 B =12638.857730 C =12866.826648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.255 3.745 3 H 0.067 0.933 4 C -0.529 4.529 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.551 5.551 13 C 0.081 3.919 14 C 0.494 3.506 15 O -0.537 6.537 16 C 0.508 3.492 17 O -0.498 6.498 18 N -0.651 5.651 19 C 0.156 3.844 20 C -0.129 4.129 21 C -0.096 4.096 22 C -0.137 4.137 23 C -0.053 4.053 24 C -0.073 4.073 25 C -0.134 4.134 26 C -0.144 4.144 27 C -0.131 4.131 28 C -0.144 4.144 29 H 0.097 0.903 30 H 0.014 0.986 31 H 0.033 0.967 32 H 0.265 0.735 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.422 0.578 37 H 0.140 0.860 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.084 0.916 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.634 -4.207 -22.554 24.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.155 3.845 3 H 0.084 0.916 4 C -0.568 4.568 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.282 5.282 13 C -0.062 4.062 14 C 0.274 3.726 15 O -0.416 6.416 16 C 0.292 3.708 17 O -0.371 6.371 18 N -0.298 5.298 19 C 0.062 3.938 20 C -0.150 4.150 21 C -0.115 4.115 22 C -0.156 4.156 23 C -0.053 4.053 24 C -0.091 4.091 25 C -0.172 4.172 26 C -0.182 4.182 27 C -0.168 4.168 28 C -0.165 4.165 29 H 0.116 0.884 30 H 0.033 0.967 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.260 0.740 37 H 0.158 0.842 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.115 0.885 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.102 0.898 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 9.420 -4.301 -22.304 24.590 hybrid contribution 0.313 -0.050 1.014 1.062 sum 9.733 -4.352 -21.290 23.810 Atomic orbital electron populations 1.22105 0.97553 0.99790 1.01152 1.19182 0.91434 0.94551 0.79292 0.91569 1.21240 1.32308 1.13232 0.89983 0.92078 1.24890 0.94836 0.94970 0.99008 1.69865 1.36076 1.22447 1.24067 0.86492 0.79249 0.79610 0.81687 1.20194 1.21109 1.20108 1.48277 1.45225 1.12743 1.21936 1.21975 1.01026 0.81367 1.01791 1.19595 0.81994 0.87288 0.83712 1.90718 1.61257 1.14479 1.75126 1.20940 0.78883 0.87542 0.83473 1.90685 1.57363 1.15366 1.73732 1.43308 1.45892 1.12586 1.27966 1.17788 0.95172 0.92806 0.88084 1.21293 0.98996 0.93663 1.01006 1.21004 0.97743 0.99724 0.92999 1.20916 1.02400 0.94559 0.97729 1.19436 0.97432 0.93855 0.94618 1.21532 0.97273 0.99138 0.91177 1.23068 0.98193 0.99558 0.96334 1.22871 0.97769 1.01018 0.96498 1.22987 0.95317 1.02348 0.96191 1.20747 1.03446 1.00706 0.91595 0.88450 0.96717 0.94746 0.92484 0.92820 0.91020 0.90429 0.74022 0.84248 0.85734 0.86168 0.88541 0.89623 0.91317 0.90198 0.91397 0.91315 0.89773 0.85688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 8.96 37.16 0.33 -3.15 16 2 C 0.25 6.44 2.62 -69.08 -0.18 6.26 16 3 H 0.07 1.89 6.91 -51.93 -0.36 1.54 16 4 C -0.53 -14.18 8.37 -34.44 -0.29 -14.46 16 5 H 0.06 1.63 7.65 -52.49 -0.40 1.23 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.60 11.32 55.43 0.63 -23.97 16 8 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.55 -12.08 2.75 -175.81 -0.48 -12.57 16 13 C 0.08 1.53 8.47 59.84 0.51 2.04 16 14 C 0.49 10.28 7.72 -11.63 -0.09 10.19 16 15 O -0.54 -12.28 15.83 5.49 0.09 -12.20 16 16 C 0.51 8.86 7.53 -11.63 -0.09 8.77 16 17 O -0.50 -8.89 10.70 5.47 0.06 -8.83 16 18 N -0.65 -9.44 5.34 -10.30 -0.05 -9.50 16 19 C 0.16 2.09 6.35 -83.75 -0.53 1.55 16 20 C -0.13 -1.74 8.68 -39.38 -0.34 -2.08 16 21 C -0.10 -1.05 10.04 -39.61 -0.40 -1.45 16 22 C -0.14 -1.33 8.53 -39.54 -0.34 -1.67 16 23 C -0.05 -0.52 5.29 -104.65 -0.55 -1.07 16 24 C -0.07 -0.56 3.97 -90.96 -0.36 -0.92 16 25 C -0.13 -0.90 7.47 -25.83 -0.19 -1.09 16 26 C -0.14 -0.84 8.09 -25.83 -0.21 -1.05 16 27 C -0.13 -0.88 7.54 -25.92 -0.20 -1.07 16 28 C -0.14 -1.61 9.61 -39.38 -0.38 -1.99 16 29 H 0.10 2.50 6.07 -51.93 -0.32 2.19 16 30 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.03 0.75 6.67 -51.93 -0.35 0.41 16 32 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.05 1.00 8.13 -51.93 -0.42 0.58 16 34 H 0.07 1.32 6.44 -51.93 -0.33 0.99 16 35 H 0.08 1.36 5.84 -51.93 -0.30 1.05 16 36 H 0.42 5.52 8.28 -40.82 -0.34 5.18 16 37 H 0.14 2.08 6.13 -52.49 -0.32 1.76 16 38 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.12 0.92 6.72 -52.49 -0.35 0.56 16 40 H 0.10 0.70 8.08 -51.93 -0.42 0.28 16 41 H 0.09 0.57 6.39 -51.93 -0.33 0.23 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.08 0.58 7.64 -51.93 -0.40 0.18 16 47 H 0.13 1.18 8.05 -52.49 -0.42 0.75 16 LS Contribution 377.41 15.07 5.69 5.69 Total: -1.00 -29.71 377.41 -9.24 -38.94 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -6.74 Total: 6.11 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -3.40 Total: 0.46 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.09 Total: -46.04 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: 0.15 Total: -21.02 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.71 -9.24 -38.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291638698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.242 kcal (2) G-P(sol) polarization free energy of solvation -29.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds