Wall clock time and date at job start Tue Mar 31 2020 15:47:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47028 * 2 1 4 4 C 1.50701 * 109.47356 * 120.00336 * 2 1 3 5 5 H 1.07996 * 119.99601 * 119.99904 * 4 2 1 6 6 C 1.37874 * 119.99755 * 300.00071 * 4 2 1 7 7 N 1.31520 * 120.00363 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99931 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47249 * 59.99868 * 8 6 4 10 10 H 1.48498 * 109.47439 * 179.97438 * 8 6 4 11 11 H 1.48509 * 109.47092 * 299.99742 * 8 6 4 12 12 N 1.46504 * 109.46844 * 240.00499 * 2 1 3 13 13 C 1.46496 * 120.00022 * 299.99383 * 12 2 1 14 14 C 1.34776 * 119.99770 * 120.00387 * 12 2 1 15 15 O 1.21356 * 120.00314 * 354.38801 * 14 12 2 16 16 C 1.49351 * 119.99801 * 174.39476 * 14 12 2 17 17 O 1.21379 * 120.00062 * 0.65282 * 16 14 12 18 18 N 1.34780 * 120.00440 * 180.37854 * 16 14 12 19 19 C 1.39724 * 120.00388 * 174.63224 * 18 16 14 20 20 C 1.38948 * 120.07582 * 330.64014 * 19 18 16 21 21 C 1.38071 * 119.92298 * 179.79141 * 20 19 18 22 22 C 1.38316 * 120.07610 * 0.46418 * 21 20 19 23 23 C 1.38272 * 120.15048 * 359.79136 * 22 21 20 24 24 C 1.50706 * 119.95889 * 179.97438 * 23 22 21 25 25 C 1.53778 * 113.61366 * 39.15896 * 24 23 22 26 26 C 1.53952 * 87.01768 * 220.04645 * 25 24 23 27 27 C 1.53773 * 87.11332 * 25.36247 * 26 25 24 28 28 C 1.38113 * 120.07763 * 359.97438 * 23 22 21 29 29 H 1.08996 * 109.46951 * 299.99921 * 1 2 3 30 30 H 1.09001 * 109.47074 * 59.99317 * 1 2 3 31 31 H 1.08991 * 109.46979 * 179.97438 * 1 2 3 32 32 H 0.97001 * 120.00045 * 180.02562 * 7 6 4 33 33 H 1.08991 * 109.47483 * 263.76604 * 13 12 2 34 34 H 1.09004 * 109.47025 * 23.76660 * 13 12 2 35 35 H 1.08997 * 109.46906 * 143.76085 * 13 12 2 36 36 H 0.97001 * 119.99325 * 354.62883 * 18 16 14 37 37 H 1.07997 * 120.03500 * 0.02781 * 20 19 18 38 38 H 1.08001 * 119.96189 * 180.21051 * 21 20 19 39 39 H 1.08000 * 119.92275 * 179.76326 * 22 21 20 40 40 H 1.09002 * 112.84624 * 170.35168 * 24 23 22 41 41 H 1.09000 * 113.61643 * 334.56893 * 25 24 23 42 42 H 1.09003 * 113.61190 * 105.46948 * 25 24 23 43 43 H 1.09003 * 113.53398 * 270.81125 * 26 25 24 44 44 H 1.08994 * 113.74213 * 139.94753 * 26 25 24 45 45 H 1.09003 * 113.61570 * 220.09160 * 27 26 25 46 46 H 1.09007 * 113.61250 * 89.18689 * 27 26 25 47 47 H 1.07999 * 120.03918 * 179.97438 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6035 8 14 2.3226 -1.1197 4.0078 9 1 3.8075 -1.1190 4.0076 10 1 1.8280 -0.4195 5.2204 11 1 1.8281 -2.5200 4.0080 12 7 2.0183 -0.6905 -1.1963 13 6 1.6644 -2.0931 -1.4281 14 6 2.7932 -0.0355 -2.0833 15 8 3.0028 1.1519 -1.9454 16 6 3.3938 -0.7708 -3.2362 17 8 3.1744 -1.9558 -3.3809 18 7 4.1749 -0.1174 -4.1191 19 6 4.8272 -0.8249 -5.1322 20 6 5.1984 -2.1484 -4.9293 21 6 5.8390 -2.8459 -5.9341 22 6 6.1197 -2.2257 -7.1381 23 6 5.7564 -0.9071 -7.3415 24 6 6.0649 -0.2355 -8.6548 25 6 5.8652 -1.1488 -9.8757 26 6 7.1463 -0.5208 -10.4542 27 6 7.5625 -0.2239 -9.0040 28 6 5.1111 -0.2050 -6.3424 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 0.7095 1.1617 3.4845 33 1 2.4693 -2.7349 -1.0700 34 1 0.7453 -2.3294 -0.8918 35 1 1.5152 -2.2585 -2.4951 36 1 4.2842 0.8440 -4.0512 37 1 4.9828 -2.6321 -3.9881 38 1 6.1248 -3.8757 -5.7783 39 1 6.6243 -2.7724 -7.9210 40 1 5.5856 0.7384 -8.7550 41 1 5.9637 -2.2102 -9.6478 42 1 4.9676 -0.9197 -10.4502 43 1 6.9623 0.3747 -11.0478 44 1 7.7969 -1.2359 -10.9575 45 1 8.0332 0.7509 -8.8757 46 1 8.1260 -1.0319 -8.5373 47 1 4.8280 0.8250 -6.5018 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291638698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:47:08 Heat of formation + Delta-G solvation = -27.424604 kcal Electronic energy + Delta-G solvation = -27650.700299 eV Core-core repulsion = 23798.939308 eV Total energy + Delta-G solvation = -3851.760992 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.24071 -40.91639 -39.85811 -38.50402 -37.54457 -35.85934 -34.71336 -32.18571 -31.51320 -30.76423 -27.91696 -27.34861 -26.48511 -26.39260 -26.21897 -23.55454 -23.30245 -21.91301 -20.76519 -20.09151 -18.95984 -18.53360 -18.21197 -17.83897 -17.25742 -17.03383 -16.72503 -16.45024 -16.18456 -15.68918 -15.57809 -15.07367 -14.91191 -14.58604 -14.47430 -14.21958 -14.05553 -13.64329 -13.52380 -13.38072 -13.28868 -13.02219 -13.01100 -12.77771 -12.75371 -12.65165 -12.33593 -12.26614 -12.21179 -12.09995 -11.63396 -11.36198 -11.26500 -11.20285 -11.10938 -10.58431 -10.34677 -9.68784 -9.58573 -9.11931 -8.18799 -6.35582 -0.05462 0.40917 0.64778 1.27836 1.42298 1.43680 1.51696 2.07850 2.37321 2.57304 2.79458 3.09318 3.24083 3.70139 3.76376 3.91449 3.99316 4.14088 4.16312 4.26361 4.38567 4.41024 4.46932 4.53761 4.69534 4.70581 4.84845 4.85821 4.90896 4.92989 4.97072 5.00118 5.05472 5.15551 5.15732 5.20553 5.28183 5.34081 5.35648 5.40066 5.54082 5.57156 5.59164 5.76527 5.86515 5.99786 6.05337 6.07051 6.44826 6.62010 6.72202 6.94176 7.35097 8.85556 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.028609 B = 0.002215 C = 0.002176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.475443 B =12638.857730 C =12866.826648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.259 3.741 3 H 0.023 0.977 4 C -0.544 4.544 5 H 0.058 0.942 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.966 3.034 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.265 1.265 12 N -0.562 5.562 13 C 0.087 3.913 14 C 0.487 3.513 15 O -0.564 6.564 16 C 0.517 3.483 17 O -0.504 6.504 18 N -0.637 5.637 19 C 0.130 3.870 20 C -0.150 4.150 21 C -0.098 4.098 22 C -0.129 4.129 23 C -0.051 4.051 24 C -0.078 4.078 25 C -0.134 4.134 26 C -0.137 4.137 27 C -0.131 4.131 28 C -0.145 4.145 29 H 0.075 0.925 30 H 0.025 0.975 31 H 0.048 0.952 32 H 0.267 0.733 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.427 0.573 37 H 0.119 0.881 38 H 0.144 0.856 39 H 0.147 0.853 40 H 0.101 0.899 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.084 0.916 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.796 -5.528 -24.557 27.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.158 3.842 3 H 0.041 0.959 4 C -0.582 4.582 5 H 0.077 0.923 6 C -0.181 4.181 7 N -0.550 5.550 8 Si 0.791 3.209 9 H -0.203 1.203 10 H -0.206 1.206 11 H -0.190 1.190 12 N -0.292 5.292 13 C -0.055 4.055 14 C 0.270 3.730 15 O -0.445 6.445 16 C 0.299 3.701 17 O -0.379 6.379 18 N -0.283 5.283 19 C 0.037 3.963 20 C -0.170 4.170 21 C -0.116 4.116 22 C -0.147 4.147 23 C -0.052 4.052 24 C -0.096 4.096 25 C -0.172 4.172 26 C -0.175 4.175 27 C -0.168 4.168 28 C -0.165 4.165 29 H 0.094 0.906 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.266 0.734 37 H 0.137 0.863 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.119 0.881 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.102 0.898 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 10.600 -5.635 -24.353 27.151 hybrid contribution 0.033 0.393 1.500 1.551 sum 10.633 -5.242 -22.853 25.745 Atomic orbital electron populations 1.21911 0.96419 1.00444 1.00550 1.18838 0.92273 0.92601 0.80508 0.95860 1.21457 1.32553 1.13300 0.90934 0.92340 1.25691 0.94930 0.95620 1.01840 1.69990 1.36787 1.23508 1.24757 0.85495 0.78426 0.78930 0.78097 1.20265 1.20588 1.18952 1.48246 1.45714 1.13837 1.21371 1.22052 1.01057 0.79536 1.02809 1.20196 0.81335 0.87147 0.84371 1.90688 1.61975 1.15838 1.76020 1.20131 0.79591 0.87177 0.83191 1.90678 1.58054 1.15236 1.73902 1.43138 1.44915 1.12798 1.27472 1.17978 0.96666 0.93135 0.88557 1.21277 1.00599 0.94021 1.01127 1.21248 0.97036 1.00598 0.92757 1.21242 1.01221 0.94558 0.97697 1.19773 0.96242 0.94022 0.95150 1.21650 0.98238 0.99507 0.90237 1.23094 0.98818 0.99506 0.95749 1.22852 0.97205 1.01387 0.96028 1.22999 0.94436 1.02560 0.96820 1.20964 1.03085 1.01497 0.90925 0.90637 0.95642 0.93342 0.92361 0.92774 0.90708 0.88894 0.73421 0.86276 0.83783 0.83556 0.88076 0.89353 0.91135 0.89587 0.90557 0.91093 0.89778 0.84226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.47 8.96 71.98 0.64 -5.82 16 2 C 0.26 13.45 2.62 44.24 0.12 13.57 16 3 H 0.02 1.41 6.91 -2.38 -0.02 1.39 16 4 C -0.54 -29.62 8.37 25.60 0.21 -29.41 16 5 H 0.06 3.14 7.65 -2.91 -0.02 3.12 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -51.51 11.32 21.45 0.24 -51.27 16 8 Si 0.97 42.85 29.54 68.60 2.03 44.88 16 9 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 11 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 12 N -0.56 -25.10 2.75 -828.51 -2.28 -27.38 16 13 C 0.09 3.27 8.47 127.77 1.08 4.35 16 14 C 0.49 20.85 7.72 87.24 0.67 21.52 16 15 O -0.56 -26.84 15.83 -3.26 -0.05 -26.89 16 16 C 0.52 18.22 7.53 87.24 0.66 18.88 16 17 O -0.50 -18.01 10.70 -3.34 -0.04 -18.04 16 18 N -0.64 -18.56 5.34 -304.83 -1.63 -20.18 16 19 C 0.13 3.40 6.35 38.21 0.24 3.65 16 20 C -0.15 -3.97 8.68 22.40 0.19 -3.77 16 21 C -0.10 -1.97 10.04 22.25 0.22 -1.75 16 22 C -0.13 -2.16 8.53 22.30 0.19 -1.97 16 23 C -0.05 -0.89 5.29 -19.88 -0.11 -1.00 16 24 C -0.08 -0.99 3.97 -11.01 -0.04 -1.04 16 25 C -0.13 -1.41 7.47 31.18 0.23 -1.18 16 26 C -0.14 -1.18 8.09 31.18 0.25 -0.93 16 27 C -0.13 -1.39 7.54 31.12 0.23 -1.16 16 28 C -0.14 -3.01 9.61 22.40 0.22 -2.80 16 29 H 0.07 3.97 6.07 -2.39 -0.01 3.96 16 30 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.05 2.13 6.67 -2.39 -0.02 2.12 16 32 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 33 H 0.05 2.01 8.13 -2.39 -0.02 1.99 16 34 H 0.07 2.72 6.44 -2.39 -0.02 2.70 16 35 H 0.09 3.20 5.84 -2.39 -0.01 3.18 16 36 H 0.43 11.29 8.28 -92.71 -0.77 10.52 16 37 H 0.12 3.61 6.13 -2.91 -0.02 3.59 16 38 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 39 H 0.15 1.68 6.72 -2.91 -0.02 1.66 16 40 H 0.10 1.21 8.08 -2.39 -0.02 1.19 16 41 H 0.09 0.88 6.39 -2.39 -0.02 0.86 16 42 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 46 H 0.08 0.91 7.64 -2.38 -0.02 0.89 16 47 H 0.14 2.41 8.05 -2.91 -0.02 2.39 16 Total: -1.00 -64.73 377.41 3.98 -60.75 By element: Atomic # 1 Polarization: 25.24 SS G_CDS: 0.23 Total: 25.47 kcal Atomic # 6 Polarization: 7.18 SS G_CDS: 5.47 Total: 12.66 kcal Atomic # 7 Polarization: -95.16 SS G_CDS: -3.66 Total: -98.83 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -0.09 Total: -44.93 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -64.73 3.98 -60.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291638698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.323 kcal (2) G-P(sol) polarization free energy of solvation -64.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds