Wall clock time and date at job start Tue Mar 31 2020 16:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50700 * 120.00140 * 2 1 4 4 N 1.46900 * 109.46954 * 125.00727 * 3 2 1 5 5 C 1.46904 * 111.00114 * 301.43232 * 4 3 2 6 6 C 1.50697 * 109.47086 * 298.41171 * 5 4 3 7 7 H 1.07999 * 120.00151 * 3.83753 * 6 5 4 8 8 C 1.37877 * 120.00066 * 183.83435 * 6 5 4 9 9 N 1.31516 * 120.00149 * 0.02562 * 8 6 5 10 10 Si 1.86806 * 120.00148 * 179.97438 * 8 6 5 11 11 H 1.48496 * 109.46550 * 60.00473 * 10 8 6 12 12 H 1.48497 * 109.47045 * 179.97438 * 10 8 6 13 13 H 1.48491 * 109.47235 * 300.00364 * 10 8 6 14 14 C 1.46903 * 111.00274 * 65.38852 * 4 3 2 15 15 H 1.08996 * 109.46597 * 306.67660 * 14 4 3 16 16 C 1.52993 * 109.47037 * 186.67461 * 14 4 3 17 17 C 1.50698 * 109.46754 * 66.67486 * 14 4 3 18 18 O 1.21274 * 120.00600 * 19.76930 * 17 14 4 19 19 N 1.34777 * 119.99736 * 199.76902 * 17 14 4 20 20 C 1.39320 * 120.00179 * 175.54178 * 19 17 14 21 21 C 1.39209 * 119.89869 * 36.85354 * 20 19 17 22 22 C 1.37079 * 120.10505 * 180.27497 * 21 20 19 23 23 C 1.40057 * 119.89312 * 359.45749 * 22 21 20 24 24 C 1.46853 * 120.10341 * 180.27472 * 23 22 21 25 25 C 1.50703 * 119.99580 * 5.28384 * 24 23 22 26 26 O 1.21285 * 120.00327 * 185.28935 * 24 23 22 27 27 C 1.40064 * 119.80327 * 0.51758 * 23 22 21 28 28 C 1.37081 * 119.88976 * 359.75655 * 27 23 22 29 29 H 1.08003 * 119.99548 * 359.97438 * 1 2 3 30 30 H 1.07993 * 120.00233 * 180.02562 * 1 2 3 31 31 H 1.08002 * 120.00025 * 179.97438 * 2 1 3 32 32 H 1.09003 * 109.47010 * 5.00806 * 3 2 1 33 33 H 1.08996 * 109.47503 * 245.00724 * 3 2 1 34 34 H 1.08998 * 109.46961 * 58.41036 * 5 4 3 35 35 H 1.09000 * 109.47031 * 178.41510 * 5 4 3 36 36 H 0.97000 * 120.00401 * 179.97438 * 9 8 6 37 37 H 1.08996 * 109.47740 * 59.99923 * 16 14 4 38 38 H 1.09003 * 109.47331 * 180.02562 * 16 14 4 39 39 H 1.09001 * 109.47135 * 299.99682 * 16 14 4 40 40 H 0.97005 * 120.00167 * 355.54640 * 19 17 14 41 41 H 1.08004 * 119.94697 * 0.02562 * 21 20 19 42 42 H 1.07997 * 120.05799 * 179.72440 * 22 21 20 43 43 H 1.09000 * 109.46902 * 5.87221 * 25 24 23 44 44 H 1.08998 * 109.46876 * 125.86901 * 25 24 23 45 45 H 1.09000 * 109.47418 * 245.86831 * 25 24 23 46 46 H 1.07993 * 120.05124 * 179.73018 * 27 23 22 47 47 H 1.08004 * 119.94506 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9965 1.3318 1.1344 5 6 2.2820 1.1683 2.4076 6 6 1.3155 2.3098 2.5914 7 1 1.1944 3.0460 1.8105 8 6 0.5857 2.4144 3.7565 9 7 0.7334 1.5182 4.7076 10 14 -0.6119 3.8298 3.9846 11 1 -1.6439 3.7816 2.9180 12 1 -1.2672 3.7146 5.3122 13 1 0.1229 5.1177 3.9048 14 6 4.0406 0.3098 0.9817 15 1 3.5760 -0.6617 0.8131 16 6 4.8905 0.2552 2.2526 17 6 4.9166 0.6585 -0.1939 18 8 4.9407 1.7951 -0.6162 19 7 5.6733 -0.2928 -0.7761 20 6 6.4114 0.0068 -1.9190 21 6 7.0101 1.2567 -2.0506 22 6 7.7326 1.5580 -3.1759 23 6 7.8775 0.6019 -4.1891 24 6 8.6556 0.9177 -5.3939 25 6 9.3980 2.2257 -5.4900 26 8 8.7008 0.1259 -6.3115 27 6 7.2739 -0.6545 -4.0522 28 6 6.5486 -0.9448 -2.9258 29 1 -0.5399 0.9354 0.0004 30 1 -0.5400 -0.9352 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6212 1.4027 -0.9314 34 1 1.7340 0.2262 2.3983 35 1 2.9990 1.1636 3.2285 36 1 0.2202 1.5920 5.5275 37 1 4.2570 0.0030 3.1029 38 1 5.6656 -0.5028 2.1391 39 1 5.3551 1.2267 2.4211 40 1 5.7039 -1.1861 -0.3993 41 1 6.9017 1.9917 -1.2666 42 1 8.1929 2.5295 -3.2792 43 1 9.3270 2.7544 -4.5395 44 1 10.4456 2.0327 -5.7210 45 1 8.9583 2.8359 -6.2790 46 1 7.3795 -1.3931 -4.8329 47 1 6.0824 -1.9132 -2.8195 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292254384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:17:02 Heat of formation + Delta-G solvation = -6.577521 kcal Electronic energy + Delta-G solvation = -27839.276767 eV Core-core repulsion = 23988.419773 eV Total energy + Delta-G solvation = -3850.856994 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.84808 -39.81034 -38.36528 -37.02208 -34.83474 -33.14826 -32.71553 -31.89886 -30.91894 -30.04317 -28.83874 -27.38937 -24.77631 -24.41134 -23.15904 -23.03979 -21.09254 -20.27485 -20.06873 -18.91652 -17.89629 -16.98228 -16.81848 -16.27941 -15.89106 -15.38195 -15.21478 -14.99723 -14.72986 -14.67724 -14.33473 -14.20641 -14.03996 -13.62841 -13.40689 -12.98221 -12.92036 -12.56649 -12.45965 -12.38552 -12.27296 -12.14561 -11.97090 -11.45012 -11.25810 -11.13260 -10.96514 -10.77321 -10.64282 -10.49633 -10.39751 -10.03142 -9.96155 -9.50751 -9.24941 -9.16738 -8.74404 -8.43836 -8.35327 -7.31949 -6.05480 -4.05009 0.39405 1.20618 2.10806 2.70807 2.85056 2.93327 3.32360 3.36371 3.40005 3.61426 3.84854 4.40143 4.48602 4.71244 4.74001 4.78950 4.83680 5.01070 5.10905 5.12688 5.25380 5.30568 5.34480 5.38812 5.41394 5.51055 5.57733 5.73440 5.79584 5.83159 6.01020 6.07082 6.09238 6.14309 6.18007 6.28126 6.39075 6.49701 6.65752 6.76901 7.09052 7.15599 7.25008 7.28931 7.29382 7.37714 7.73172 7.97457 8.11621 8.21023 8.47989 9.00285 9.58214 11.05684 Molecular weight = 330.17amu Principal moments of inertia in cm(-1) A = 0.021697 B = 0.002415 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.178189 B =11592.596004 C =11716.270544 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.185 4.185 3 C 0.089 3.911 4 N -0.506 5.506 5 C 0.190 3.810 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.058 3.942 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.288 1.288 13 H -0.276 1.276 14 C 0.066 3.934 15 H 0.056 0.944 16 C -0.144 4.144 17 C 0.520 3.480 18 O -0.489 6.489 19 N -0.683 5.683 20 C 0.194 3.806 21 C -0.138 4.138 22 C -0.051 4.051 23 C -0.202 4.202 24 C 0.399 3.601 25 C -0.203 4.203 26 O -0.469 6.469 27 C -0.039 4.039 28 C -0.165 4.165 29 H 0.098 0.902 30 H 0.085 0.915 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.062 0.938 34 H -0.004 1.004 35 H 0.042 0.958 36 H 0.261 0.739 37 H 0.084 0.916 38 H 0.052 0.948 39 H 0.070 0.930 40 H 0.411 0.589 41 H 0.146 0.854 42 H 0.136 0.864 43 H 0.084 0.916 44 H 0.091 0.909 45 H 0.094 0.906 46 H 0.134 0.866 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.314 -5.471 -13.585 20.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.205 4.205 3 C -0.038 4.038 4 N -0.230 5.230 5 C 0.066 3.934 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.143 4.143 9 N -0.538 5.538 10 Si 0.723 3.277 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.202 1.202 14 C -0.046 4.046 15 H 0.074 0.926 16 C -0.202 4.202 17 C 0.307 3.693 18 O -0.360 6.360 19 N -0.330 5.330 20 C 0.097 3.903 21 C -0.158 4.158 22 C -0.070 4.070 23 C -0.204 4.204 24 C 0.279 3.721 25 C -0.260 4.260 26 O -0.346 6.346 27 C -0.058 4.058 28 C -0.186 4.186 29 H 0.117 0.883 30 H 0.103 0.897 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.014 0.986 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.103 0.897 38 H 0.071 0.929 39 H 0.089 0.911 40 H 0.248 0.752 41 H 0.164 0.836 42 H 0.154 0.846 43 H 0.103 0.897 44 H 0.110 0.890 45 H 0.113 0.887 46 H 0.152 0.848 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.453 -4.584 -14.075 20.689 hybrid contribution -1.224 -0.623 0.577 1.490 sum 13.228 -5.208 -13.498 19.604 Atomic orbital electron populations 1.23682 0.95960 1.01186 1.00128 1.23501 0.96868 0.99444 1.00697 1.21287 0.94553 0.94617 0.93391 1.62286 1.12413 1.43642 1.04674 1.19892 0.92773 0.96385 0.84329 1.21050 1.21378 1.09825 1.01855 0.92031 1.24918 0.97285 0.96301 0.95822 1.69927 1.41885 1.35083 1.06940 0.86600 0.81134 0.82821 0.77117 1.20331 1.21410 1.20159 1.21514 0.94206 0.96100 0.92802 0.92598 1.21894 0.99163 1.02497 0.96634 1.21291 0.79303 0.84777 0.83911 1.90685 1.63588 1.19804 1.61911 1.43766 1.46157 1.15905 1.27123 1.18104 0.90557 0.94731 0.86864 1.21206 0.97475 0.97153 0.99944 1.21282 0.95473 0.98384 0.91862 1.20448 1.05705 0.96300 0.97926 1.22381 0.77418 0.87532 0.84770 1.22246 1.02072 0.96811 1.04854 1.90529 1.55892 1.49487 1.38704 1.21026 0.92843 0.95588 0.96354 1.20806 1.03734 1.00569 0.93458 0.88338 0.89684 0.89032 0.89192 0.92021 0.98617 0.94037 0.92922 0.89687 0.92892 0.91134 0.75249 0.83601 0.84629 0.89681 0.88996 0.88707 0.84797 0.85089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 14.32 29.01 0.42 -2.57 16 2 C -0.19 -3.30 7.54 -36.03 -0.27 -3.57 16 3 C 0.09 1.75 5.25 -4.98 -0.03 1.72 16 4 N -0.51 -10.43 4.25 -230.92 -0.98 -11.41 16 5 C 0.19 4.61 3.96 -4.98 -0.02 4.59 16 6 C -0.50 -13.55 8.59 -34.44 -0.30 -13.85 16 7 H 0.06 1.67 6.64 -52.49 -0.35 1.32 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 9 N -0.90 -25.68 13.29 55.43 0.74 -24.94 16 10 Si 0.90 21.32 29.54 -169.99 -5.02 16.29 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 13 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.07 1.07 2.36 -68.87 -0.16 0.91 16 15 H 0.06 0.83 6.37 -51.93 -0.33 0.50 16 16 C -0.14 -2.15 8.58 37.15 0.32 -1.83 16 17 C 0.52 7.85 6.06 -10.99 -0.07 7.78 16 18 O -0.49 -9.01 13.10 5.56 0.07 -8.94 16 19 N -0.68 -7.68 5.30 -9.85 -0.05 -7.73 16 20 C 0.19 2.22 6.26 -83.73 -0.52 1.70 16 21 C -0.14 -1.64 8.63 -39.64 -0.34 -1.98 16 22 C -0.05 -0.50 9.37 -39.32 -0.37 -0.87 16 23 C -0.20 -2.08 5.87 -105.05 -0.62 -2.70 16 24 C 0.40 3.99 7.21 -30.82 -0.22 3.77 16 25 C -0.20 -1.28 10.16 36.01 0.37 -0.91 16 26 O -0.47 -6.16 17.09 5.55 0.09 -6.06 16 27 C -0.04 -0.40 9.57 -39.32 -0.38 -0.78 16 28 C -0.17 -1.63 9.92 -39.64 -0.39 -2.02 16 29 H 0.10 1.77 7.84 -52.48 -0.41 1.36 16 30 H 0.08 1.31 8.06 -52.49 -0.42 0.88 16 31 H 0.09 1.48 6.80 -52.49 -0.36 1.12 16 32 H 0.09 1.92 6.19 -51.93 -0.32 1.60 16 33 H 0.06 1.17 6.56 -51.93 -0.34 0.83 16 34 H 0.00 -0.10 6.99 -51.93 -0.36 -0.46 16 35 H 0.04 1.06 5.84 -51.93 -0.30 0.76 16 36 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 37 H 0.08 1.41 6.19 -51.93 -0.32 1.09 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.41 3.31 8.82 -40.82 -0.36 2.95 16 41 H 0.15 1.96 6.34 -52.48 -0.33 1.63 16 42 H 0.14 0.96 6.02 -52.49 -0.32 0.65 16 43 H 0.08 0.40 5.69 -51.93 -0.30 0.11 16 44 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.13 1.28 7.65 -52.49 -0.40 0.88 16 47 H 0.13 1.00 8.06 -52.48 -0.42 0.57 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -32.63 383.92 -8.52 -41.15 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -6.48 Total: 4.97 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: -2.68 Total: -9.12 kcal Atomic # 7 Polarization: -43.79 SS G_CDS: -0.30 Total: -44.09 kcal Atomic # 8 Polarization: -15.17 SS G_CDS: 0.17 Total: -15.00 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.63 -8.52 -41.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292254384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.576 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds